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Platform GPL21139 Query DataSets for GPL21139
Status Public on Jan 31, 2016
Title NimbleGen Mouse ChIP-chip Array [090826_MM9_JD_ChIP_HX1]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site www.nimblegen.com
 
Description Annotation based on the UCSC mm9 assembly genome.
The 50-mer probes were selected every 20 bases with no repeat masking, for both forward and reverse.
 
Submission date Nov 15, 2015
Last update date Jan 31, 2016
Contact name Guray Kuzu
Organization name Massachusetts General Hospital
Street address 185 Cambridge Street
City Boston
ZIP/Postal code 02114
Country USA
 
Samples (6) GSM1940883, GSM1940884, GSM1940885, GSM1940886, GSM1940887, GSM1940888
Series (1)
GSE75018 Large-scale nucleosome density patterns and precise nucleosome positioning correlate with V(D)J recombination at the IgH locus in a cell-type specific manner

Data table header descriptions
ID unique PROBE_IDs of .pos file
SEQ_ID Sequence ID of the oligo
CHROMOSOME Chromosomal location
RANGE_GB CHROMOSOME GenBank Accession number
SEQ_ID
RANGE_START Chromosomal start position
RANGE_END Chromosomal end position

Data table
ID SEQ_ID CHROMOSOME RANGE_GB SEQ_ID RANGE_START RANGE_END
CHR06FS040831413 chr6:40831411-40837916 chr6 NC_000072.5 40831413 40831468
CHR06FS040831423 chr6:40831411-40837916 chr6 NC_000072.5 40831423 40831482
CHR06FS040831438 chr6:40831411-40837916 chr6 NC_000072.5 40831438 40831496
CHR06FS040831448 chr6:40831411-40837916 chr6 NC_000072.5 40831448 40831507
CHR06FS040831453 chr6:40831411-40837916 chr6 NC_000072.5 40831453 40831509
CHR06FS040831463 chr6:40831411-40837916 chr6 NC_000072.5 40831463 40831520
CHR06FS040831478 chr6:40831411-40837916 chr6 NC_000072.5 40831478 40831538
CHR06FS040831483 chr6:40831411-40837916 chr6 NC_000072.5 40831483 40831541
CHR06FS040831498 chr6:40831411-40837916 chr6 NC_000072.5 40831498 40831559
CHR06FS040831503 chr6:40831411-40837916 chr6 NC_000072.5 40831503 40831563
CHR06FS040831513 chr6:40831411-40837916 chr6 NC_000072.5 40831513 40831569
CHR06FS040831523 chr6:40831411-40837916 chr6 NC_000072.5 40831523 40831578
CHR06FS040831538 chr6:40831411-40837916 chr6 NC_000072.5 40831538 40831595
CHR06FS040831543 chr6:40831411-40837916 chr6 NC_000072.5 40831543 40831598
CHR06FS040831553 chr6:40831411-40837916 chr6 NC_000072.5 40831553 40831607
CHR06FS040831568 chr6:40831411-40837916 chr6 NC_000072.5 40831568 40831627
CHR06FS040831578 chr6:40831411-40837916 chr6 NC_000072.5 40831578 40831637
CHR06FS040831588 chr6:40831411-40837916 chr6 NC_000072.5 40831588 40831650
CHR06FS040831598 chr6:40831411-40837916 chr6 NC_000072.5 40831598 40831661
CHR06FS040831603 chr6:40831411-40837916 chr6 NC_000072.5 40831603 40831667

Total number of rows: 628978

Table truncated, full table size 49042 Kbytes.




Download family Format
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MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL21139_090826_MM9_JD_ChIP_HX1.ndf.gz 132.7 Mb (ftp)(http) NDF
GPL21139_090826_MM9_JD_ChIP_HX1.pos.gz 3.5 Mb (ftp)(http) POS

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