GEO Accession viewer

GSE96573	Reduced protein expression in a virus attenuated by codon deoptimization
GSE104504	Crosstalk between global regulators CRP and FIS in E. coli.
GSE104505	CRP and FIS
GSE107327	E. coli MazF does not create specialized ribosomes that translate leaderless mRNAs, but instead blocks rRNA maturation and ribosome biogenesis [RNA-seq]
GSE107328	E. coli MazF does not create specialized ribosomes that translate leaderless mRNAs, but instead blocks rRNA maturation and ribosome biogenesis [Ribo-Seq]
GSE107330	E. coli MazF does not create specialized ribosomes that translate leaderless mRNAs, but instead blocks rRNA maturation and ribosome biogenesis
GSE108727	Assessment of Variant Abundance by Massively Parallel Sequencing for PTEN and TPMT
GSE109766	High-resolution RNA 3’-ends mapping of bacterial rho-dependent transcripts
GSE111874	Escherichia coli Lrp regulates one-third of the genome via direct, cooperative, and indirect paths
GSE111962	RNA Framework: an all-in-one toolkit for the analysis of RNA structures and post-transcriptional modifications
GSE117186	Topo-Seq application for topoisomerases binding sites identification with a single-nucleotide resolution
GSE117737	Full-length RNA profiling reveals pervasive bidirectional transcription terminators in bacteria
GSE117939	High throughput in vivo mapping of RNA accessible interfaces to identify functional sRNA binding sites
GSE119454	Assembly and functionality of the ribosome with tethered subunits
GSE120240	Massively Parallel Reporter Assay for pluripotency factors in mESCs
GSE121927	Detection of internal N7-methylguanosine (m7G) RNA modifications by mutational profiling sequencing
GSE122286	In vivo analysis of Influenza A mRNA secondary structures identifies critical regulatory motifs
GSE125110	Complete genome sequence of Escherichia coli C - old model organism with a new application in biofilm research
GSE126081	Transcriptome profiling in an Escherichia coli strain collection
GSE128812	Systematic detection of amino acid substitutions in proteome reveals a mechanistic basis of ribosome errors and selection for translation fidelity
GSE133607	Independent component analysis of E. coli’s transcriptome reveals the cellular processes which respond to heterologous gene expression
GSE134324	High throughput ribosome profiling of E. coli expressing a library of heterologous proteins
GSE135717	An Improved Platform for Functional Assessment of Large Protein Libraries in Mammalian Cells
GSE135946	K5 capsule and lipopolysaccharide are important in resistance to T4 phage attack in probiotic E. coli strain Nissle 1917
GSE137362	Collateral fitness effects of mutations
GSE137483	Impact of urine from cranberry-treated volunteers on global gene expression of uropathogenic Escherichia coli
GSE138088	Comparative analysis of global transcriptional profile of Escherichia coli and Schizosaccharomyces pombe in respiratory and fermentative growth: Inferring the evolution of analog circuits of post-transcriptional regulation
GSE139983	From coarse to fine: The absolute Escherichia coli proteome under diverse growth conditions
GSE141018	Prokaryotic Single-Cell RNA Sequencing by In Situ Combinatorial Indexing
GSE141320	Stress induces the transcription of toxin-antitoxin systems but does not activate toxin
GSE142291	Dynamic landscape of protein occupancy across the Escherichia coli chromosome
GSE142656	A simple, cost-effective, and robust method for rRNA depletion in RNA-sequencing studies
GSE143807	Influence of the putative transcription factor ClbR and the thioesterase ClbQ on colibactin synthesis regulation and characterization of critical transcription start sites in Escherichia coli
GSE144029	Expression of E. coli RNase toxins
GSE144030	E.coli toxin-antitoxin systems
GSE144068	RNA sequencing of Escherichia coli Nissle 1917 after HOCl stress
GSE144795	The serotonin neurotransmitter modulates virulence of enteric pathogens
GSE144816	Understanding the roles of dksA and greA in inorganic polyphosphate accumulation in Escherichia coli
GSE145630	Multiplexed characterization of rationally designed promoter architectures deconstructs combinatorial logic for IPTG-inducible systems
GSE147758	Thymidine starvation
GSE147760	Tn-Seq Survival Profiling
GSE149024	Inactivation of RNase P in Escherichia coli significantly changes post-transcriptional RNA metabolism
GSE150034	Genome-wide effects of the antimicrobial peptide apidaecin on translation termination
GSE151327	Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements
GSE152974	Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli
GSE153028	Deciphering the transcriptional changes in Escherichia coli strains C41(DE3) and C43(DE3) that makes them a superior choice for membrane protein production.
GSE153497	RNA degradation analysis reveals ribosome dynamics in complex microbiome samples
GSE154563	SHAPE analysis of RNA structure in living cells with unprecedented accuracy
GSE157942	Generation of Escherichia coli Enhanced Acetate Utilization through Compensatory ATP Consumption via Adaptive Laboratory Evolution
GSE158570	Genome-wide tracking of Escherichia coli DNA polymerase V to the lagging strand during the SOS response
GSE158637	Spacer prioritization in CRISPR-Cas9 immunity is enabled by the leader RNA
GSE159409	An inducible CRISPR-interference library for genetic interrogation of Saccharomyces cerevisiae biology
GSE159469	Multidimensional PTEN missense variant analysis reveals variant subgroups including potential dominant negatives
GSE161708	Differential transcription in E. coli WT vs. fum null mutants in response to DNA damage induction
GSE164308	Landscape of transcriptional and translational changes over 22 years of bacterial adaptation
GSE165812	Information Content Differentiates Enhancers From Silencers in Mouse Photoreceptors
GSE166938	Next Generation Sequencing of bacterial surface-displayed ENAH EVH1 ligand peptides after a FACS titration sort (MassTitr)
GSE166974	Transgenesis of mammalian PABP reveals new role of mRNA polyadenylation in general stress response in Escherichia coli
GSE168963	Transcriptome RNA Sequencing Data Set of Differential Gene Expression in Escherichia Coli BW25113 SlyA Wild Type and Mutant Strains
GSE174575	Bacterial Heterochromatin Formation Through Liquid-Liquid Phase Separation
GSE180796	Anchor-Based Bisulfite Sequencing determines genome-wide DNA methylation
GSE180830	Regulatory perturbations of ribosome allocation in bacteria reshape the growth proteome with a trade-off in adaptation capacity
GSE181915	ChIP-Seq of topoisomerase I in E. coli DY330
GSE181945	Genome-wide strand-specific R-loops mapping in E. coli DY330 using DRIP-Seq
GSE182473	Genome-wide strand-specific mapping of cleavage sites induced by topoisomerase I in E. coli
GSE182850	ChIP-Seq of RNAP in E. coli DY330
GSE183114	Selective recruitment of the AAA+ ATPase TnsC increases the fidelity of Type I-F CRISPR RNA-guided transposition
GSE183363	Porin-mediated passage of negamycin across the outer membrane of Escherichia coli
GSE184372	Simultaneous Detection of DNA Adenine and Cytosine Methylation using NT-seq [series1: no enrichment]
GSE184373	Simultaneous Detection of DNA Adenine and Cytosine Methylation using NT-seq [series2: 6mA DIP enrichment]
GSE184374	Simultaneous Detection of DNA Adenine and Cytosine Methylation using NT-seq
GSE185892	There is no evidence that E. coli SymE cleaves RNA [RNA-seq]
GSE188170	Ferric Citrate Uptake is a Virulence Factor in Uropathogenic Escherichia coli
GSE189154	Transcriptomic measurement of Escherichia coli under aerobic and microaerobic conditions
GSE189181	Ubiquitous mRNA decay fragments in E. coli redefine the functional transcriptome
GSE189206	Genome-wide promoter assembly mechanisms in E. coli measured at single base resolution
GSE193270	Context-specific translation arrest by evernimicin, an inhibitor of tRNA accommodation
GSE193736	A genome-scale screen for synthetic drivers of T-cell proliferation
GSE197379	RNA-sequencing of bicyclomycin treated Escherichia coli str. O157:H7 str. Sakai
GSE198120	High throughput analysis of binding of E. coli Lrp mutants
GSE199248	Landscapes of collateral fitness effects of mutations in antibiotic resistance genes
GSE202160	MRT-ModSeq - Rapid detection of RNA modifications with MarathonRT
GSE205384	Cellular RNA Targets of Cold Shock Proteins CspC and CspE and Their Importance for Serum Resistance in Septicemic Escherichia coli
GSE206423	BaM-seq and TBaM-seq, highly multiplexed and targeted RNA-seq protocols for rapid, low-cost library generation from bacterial samples [BaM-seq]
GSE206425	OnePot-seq and OPT-seq, highly multiplexed and targeted RNA-seq protocols for rapid, low-cost library generation
GSE211960	Effect of hPNPase on Escherichia coli transcritome
GSE212408	Global profiling of the RNA and protein complexes of Escherichia coli by size exclusion chromatography followed by RNA sequencing and mass spectrometry (SEC-seq)
GSE215029	Tyrosine phosphorylation controlled poly(A) polymerase I activity regulates general stress response in bacteria
GSE217004	Cas9 off-target binding to the promoter of bacterial genes leads to silencing and toxicity [ChIP-Seq]
GSE217006	Cas9 off-target binding to the promoter of bacterial genes leads to silencing and toxicity
GSE217678	Multiplex profiling of developmental enhancers with quantitative, single-cell expression reporters [bulkMPRA_PolIII_linBC_vs_oBC]
GSE217681	Multiplex profiling of developmental enhancers with quantitative, single-cell expression reporters [plasmid_libraries_subassembly]
GSE217690	Multiplex profiling of developmental enhancers with quantitative, single-cell expression reporters
GSE217715	A quantitative model for the transcriptional landscape of the bacterial cell cycle
GSE221825	Effect of hPNPase on Escherichia coli transcritome after addition of rifampicin
GSE222589	Survival of E. coli O104:H4 Strain C227/11Φcu in a Soil Microenvironment is Associated with a Broad Time-Dependent Τranscriptional Activity of Metabolic Genes
GSE223404	Bacterial mRNA sequencing through targeted rRNA depletion for efficient RNA-seq in varied species and co-cultures
GSE223913	Pol II pausing is a milestone on the road to complex animals
GSE224463	The timing of transcription of RpoS-dependent genes varies across multiple stresses
GSE225335	Enhanced genome-wide knockout screens in bacteria with CRISPR base editors
GSE228489	A new antibiotic from an uncultured bacterium binds to an immutable target
GSE229290	Viruses encode tRNA and anti-retron to evade bacterial immunity
GSE229435	Identification and genetic dissection of convergent persister cell states
GSE234211	A phage-encoded RNA-binding protein inhibits the antiviral activity of a toxin-antitoxin system
GSE235465	The global anaerobic metabolism regulator fnr is necessary for the degradation of food dyes and drugs by Escherichia coli
GSE235964	The distinct transcriptome of virulence-associated phylogenetic group B2 Escherichia coli
GSE237136	Systematic interrogation of CRISPR-based antimicrobials in Klebsiella pneumoniae reveals nuclease-, guide-, and strain-specific factors influencing antimicrobial activity
GSE241353	Active learning of enhancer and silencer regulatory grammar in photoreceptors
GSE243699	RpoS acts as a global repressor of virulence gene expression in Escherichia coli O104:H4 and enteroaggregative E. coli
GSE243800	Bacterial mRNA pseudouridylation by RluA [pseudoseq]
GSE243807	Bacterial mRNA pseudouridylation by RluA [Rend-seq]
GSE243809	Bacterial mRNA pseudouridylation by RluA
GSE245260	Multiplex profiling of developmental enhancers with quantitative, single-cell expression reporters [plasmid libraries subassembly, v2]
GSE245326	The genetic architecture of protein interaction affinity and specificity
GSE245749	TnpB homologs exapted from transposons are RNA-guided transcription factors
GSE255764	Analysis of the stress response after induction of the dormancy-inducing membrane toxin TisB in Escherichia coli
GSE261342	Antagonistic conflict between transposon-encoded introns and guide RNAs (RIP-Seq)
GSE261343	Antagonistic conflict between transposon-encoded introns and guide RNAs (RNA-Seq)
GSE261344	Antagonistic conflict between transposon-encoded introns and guide RNAs
GSE267531	The transcriptional response to low temperature is weakly conserved across Enterobacteriales
GSE270519	Activation of the PARIS immune complex by viral proteins results in host tRNA cleavage and can be overcome by viruses encoding non-cleavable tRNAs