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Platform GPL216 Query DataSets for GPL216
Status Public on Dec 23, 2002
Title Pf_proteomic
Technology type MS
Distribution virtual
Organism Plasmodium falciparum 3D7
 
Description Virtual platform describing proteins identified during analysis of Plasmodium falciparum life cycle.
Proteomes analyzed by multidimensional protein identification technology (MudPIT), which combines in-line, high-resolution liquid chromatography and tandem mass spectrometry. Two levels of control were implemented to differentiate parasite from host proteins. By using combined host-parasite sequence databases and noninfected controls, 2,417 parasite proteins were confidently identified out of thousands of host proteins.
 
Web link http://www.plasmodb.org/
Contributor(s) Florens L, Washburn MP, Raine JD, Anthony RM, Grainger M, Haynes JD, Moch JK, Muster N, Sacci JB, Tabb DL, Witney AA, Wolters D, Wu Y, Gardner MJ, Holder AA, Sinden RE, Yates JR, Carucci DJ
Submission date Nov 08, 2002
Last update date May 26, 2005
Contact name Laurence Florens
E-mail(s) florens@scripps.edu
Phone 858-784-8876
Organization name The Scripps Research Institute
Department Department of Cell Biology
Street address SR-11, 10550 North Torrey Pines Road
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Samples (4) GSM2579, GSM2580, GSM2581, GSM2582
Series (1)
GSE92 Proteomic view of the Plasmodium falciparum life cycle

Data table header descriptions
ID Pub_locus_ID
PT_ACC Protein reference sequence accession
Nucleotide_RefSeq Nucleotide reference sequence accession
L Length
MW Molecular weight
pI Isoelectric point
Plasmo_DB_Desc
SPOT_ID

Data table
ID PT_ACC Nucleotide_RefSeq L MW pI Plasmo_DB_Desc SPOT_ID
PFL2665c NP_701891 NC_004316 2268 255415 5.1 PFL2640c 2277.m00531 erythrocyte membrane protein 1 (PfEMP1)
PFL2615w NP_701881 NC_004316 351 39675 8.6 PFL2590w 2277.m00521 rifin
PFL2610w NP_701880 NC_004316 295 33429 8.4 PFL2585w 2277.m00520 stevor
PFL2575c NP_701873 NC_004316 210 24926 9.8 PFL2550c 2277.m00513 hypothetical protein
PFL2565w NP_701871 NC_004316 180 21082 8.9 PFL2540w 2277.m00511 hypothetical protein
PFL2535w NP_701865 NC_004316 450 51985 6.5 PFL2510w 2277.m00505 RESA-like protein, putative
PFL2525c NP_701863 NC_004316 378 45352 7.2 PFL2500c 2277.m00503 hypothetical protein
PFL2520w NP_701862 NC_004316 2792 328947 6.3 PFL2495w 2277.m00502 reticulocyte-binding protein, putative
PFL2505c NP_701859 NC_004316 2215 263153 9.2 PFL2480c 2277.m00499 hypothetical protein
PFL2465c NP_701853 NC_004316 210 24691 6.8 PFL2450c 2277.m00493 thymidylate kinase, putative
PFL2460w NP_701852 NC_004316 602 69015 6 PFL2445w 2277.m00492 Coronin
PFL2450c NP_701850 NC_004316 162 19685 8.8 PFL2435c 2277.m00490 hypothetical protein
PFL2445c NP_701849 NC_004316 321 38890 9.6 PFL2431w 2277.m00489 hypothetical protein
PFL2440w NP_701848 NC_004316 1647 192171 8.6 PFL2430w 2277.m00488 DNA repair protein rhp16, putative
PFL2420w NP_701844 NC_004316 656 79532 6.4 PFL2410w 2277.m00484 expressed transcript
PFL2415w NP_701843 NC_004316 297 34509 8.4 PFL2405w 2277.m00483 Hbeta58/Vps26 protein homolog, putative
PFL2410w NP_701842 NC_004316 1039 121331 9.2 PFL2400w 2277.m00482 hypothetical protein
PFL2405c NP_701841 NC_004316 3119 377388 6.1 PFL2395c 2277.m00481 PFG377 protein
PFL2400w NP_701840 NC_004316 168 19782 9.9 PFL2390w 2277.m00480 hypothetical protein
PFL2390c NP_701838 NC_004316 2932 348677 8.5 PFL2380c 2277.m00478 hypothetical protein

Total number of rows: 2417

Table truncated, full table size 222 Kbytes.




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Supplementary data files not provided
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