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Platform GPL21776 Query DataSets for GPL21776
Status Public on Aug 31, 2016
Title Agilent-069856 Medaka v19 miRNA
Technology type in situ oligonucleotide
Distribution commercial
Organism Oryzias latipes
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16069856 or 2569856.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Apr 26, 2016
Last update date Aug 31, 2016
Contact name Julien Bobe
E-mail(s) Julien.Bobe@rennes.inra.fr
Phone (33) 2 23 48 57 24
Organization name Institut National de la Recherche Agronomique
Lab INRA-SCRIBE
Street address Campus de Beaulieu
City Rennes
ZIP/Postal code 35000
Country France
 
Samples (51) GSM2138356, GSM2138357, GSM2138358, GSM2138359, GSM2138360, GSM2138361 
Series (2)
GSE80823 Identification of novel ovarian predominant miRNAs in medaka
GSE90960 Identification of miR-210 as a new myo-miR in trout

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION
1 192 328 miRNABrightCorner30 pos NA
2 192 326 Blank pos NA
3 192 324 Blank pos NA
4 192 322 Blank pos NA
5 192 320 Blank pos NA
6 192 318 Blank pos NA
7 192 316 Blank pos NA
8 192 314 Blank pos NA
9 192 312 Blank pos NA
10 192 310 Blank pos NA
11 192 308 A_26_P00001123 FALSE rno-miR-349 rno-miR-349 mir|rno-miR-349|mir|MIMAT0000599 unmapped NA
12 192 306 A_38_P00002968 FALSE dre-miR-194a dre-miR-194a mir|dre-miR-194a|mir|MIMAT0001858 unmapped NA
13 192 304 A_25_P00016268 FALSE hsa-miR-3654 hsa-miR-3654 mir|hsa-miR-3654|mir|MIMAT0018074 unmapped NA
14 192 302 A_25_P00017011 FALSE hsa-miR-4769-3p hsa-miR-4769-3p mir|hsa-miR-4769-3p|mir|MIMAT0019923 unmapped NA
15 192 300 A_25_P00012220 FALSE hsa-miR-127-5p hsa-miR-127-5p mir|hsa-miR-127-5p|mir|MIMAT0004604 unmapped NA
16 192 298 A_38_P00002901 FALSE dre-miR-202-5p dre-miR-202-5p mir|dre-miR-202-5p|mir|MIMAT0003406|mir|dre-miR-202*_v18.0|mir|MIMAT0003406 chr13:54068672-54068654 NA
17 192 296 A_25_P00017878 FALSE hsa-miR-6500-3p hsa-miR-6500-3p mir|hsa-miR-6500-3p|mir|MIMAT0025455 unmapped NA
18 192 294 A_54_P00005792 FALSE mmu-miR-1231-5p mmu-miR-1231-5p mir|mmu-miR-1231-5p|mir|MIMAT0022357 unmapped NA
19 192 292 A_25_P00017134 FALSE hsa-miR-4469 hsa-miR-4469 mir|hsa-miR-4469|mir|MIMAT0018996 unmapped NA
20 192 290 A_25_P00017109 FALSE hsa-miR-4637 hsa-miR-4637 mir|hsa-miR-4637|mir|MIMAT0019694 unmapped NA

Total number of rows: 62976

Table truncated, full table size 8221 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL21776_069856_D_GEO_20141006.txt.gz 1.8 Mb (ftp)(http) TXT

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