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Platform GPL21847 Query DataSets for GPL21847
Status Public on May 11, 2016
Title nCounter Nanostring Human Immunology v2 (Catalog #115000061)
Technology type other
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Nanostring
Manufacture protocol http://www.nanostring.com/media/pdf/MAN_nCounter_Gene_Expression_Assay.pdf
Oligonucleotide probe hybridization
 
 
Submission date May 10, 2016
Last update date Dec 30, 2020
Contact name Laura M Cox
E-mail(s) lauriemcox@gmail.com
Organization name Brigham and Women's Hospital
Department Neurology
Lab Howard Weiner
Street address 77 Avenue Louis Pasteur
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (719) GSM2149003, GSM2149004, GSM2149005, GSM2149006, GSM2149007, GSM2149008 
Series (15)
GSE81279 Alterations of the human gut microbiome in multiple sclerosis
GSE102567 Nanostring Immunology V2 panel comparing the transcriptional profile of GD2-CAR T-cells vs GD2-CAR.C7R T-cells after multiple tumor cell challenges.
GSE113342 Nanostring Immunology V2 panel comparing expression in kidney tissue from lupus nephritis patients at diagnosis (A) and at flare (B)

Data table header descriptions
ID
ORF Official gene symbol
GB_ACC NCBI accession number for the gene
GO Annotation Gene ontology annotation
SEQUENCE RNA sequence targeted by the probe
Official Full Name Official gene name
SPOT_ID
Probe type Type of probe, endogenous = measued gene, housekeeping gene = used for normalization, Positive and Negative = internal controls

Data table
ID ORF GB_ACC GO Annotation SEQUENCE Official Full Name SPOT_ID Probe type
ABCB1 ABCB1 NM_000927.3 Cell Surface,Intrinsic To Membrane,Membrane Part,Membrane,Cell Fraction,Integral To Membrane,Membrane Fraction,Establishment Of Localization,Response To Chemical Stimulus,Transport,Response To Drug,Nucleotide Binding,Purine Nucleotide Binding,Adenyl Ribonucleotide Binding,Adenyl Nucleotide Binding,Purine Ribonucleotide Binding,Atp Binding TATAGCACTAAAGTAGGAGACAAAGGAACTCAGCTCTCTGGTGGCCAGAAACAACGCATTGCCATAGCTCGTGCCCTTGTTAGACAGCCTCATATTTTGC ATP-binding cassette, sub-family B (MDR/TAP), member 1 Endogenous
ABCF1 ABCF1 NM_001090.2 Biosynthetic Process,Defense Response,Cellular Biosynthetic Process,Inflammatory Response,Response To Stress,Cellular Protein Metabolic Process,Macromolecule Biosynthetic Process,Protein Metabolic Process,Response To External Stimulus,Response To Wounding,Cellular Macromolecule Metabolic Process,Translation,Translation Regulator Activity,H CTGCGTGAGCTATGTGGATTCCATCCAGCAAATGAGGAACAAGTTTGCCTTCCGAGAGGCCATCAACAAACTGGAGAATAATCTCCGGGAGCTTCAGATC c-abl oncogene 1, non-receptor tyrosine kinase Endogenous
ABL1 ABL1 NM_005157.3 Organelle Part,Nuclear Part,Organelle Lumen,Nuclear Lumen,Non Membrane Bound Organelle,Nucleus,Membrane Enclosed Lumen,Intracellular Non Membrane Bound Organelle,Intracellular Organelle Part,Nucleolus,Dna Metabolic Process,Rna Metabolic Process,Dna Repair,Cell Development,Biopolymer Metabolic Process,Regulation Of Molecular Function,Signal TCCAAGAAGACCATGATCTCAATAGTCAGTTACTGATGCTCCTGAACCCTATGTGTCCATTTCTGCACACACGTATACCTCGGCATGGCCGCGTCACTTC adenosine deaminase Endogenous
ADA ADA NM_000022.2 Hydrolase Activity Acting On Carbon Nitrogen Not Peptidebonds,Hydrolase Activity Acting On Carbon Nitrogen Not Peptidebondsin Cyclic Amidines,Deaminase Activity CTGCTACCACATCCACTCTAAGCAAGGACTCTCTCAATCCTAGTTCCCTCCTGGCTGCCATGATGCAACAAGATGAGTCTATTTATCTCTATCCTGCTTC aryl hydrocarbon receptor Endogenous
AHR AHR NM_001621.3 Nucleus,Rna Metabolic Process,Cell Development,Biopolymer Metabolic Process,Nucleobasenucleosidenucleotide And Nucleic Acid Metabolic Process,Transcription Dna Dependent,Programmed Cell Death,Response To Xenobiotic Stimulus,Rna Biosynthetic Process,Response To Stress,Regulation Of Cellular Metabolic Process,Response To Chemical Stimulus,Re GCTGCATGAAAATTCAGTTCGTCTCTCCAGACAGCTTCGGCGCATCCTTTTGCCCCTGTATGAGGTTGATGACTTACGAGACGCATTTCGTACTTTGGGA activation-induced cytidine deaminase Endogenous
AICDA AICDA NM_020661.1 Cytoplasm CAGCGCCACCTCTTGTCAGTGCTCGGCTGTAAACAGCTCTGTGTTTCTGGGGACACCAGCCATCATGTGCCTGGAAATTAAACCCTGCCCCACTTCTCTA autoimmune regulator Endogenous
AIRE AIRE NM_000383.2 Transcription Factor Activity,Dna Binding TAAAGCATTTCGAGCATGTGCGCATGGTGGATCCCAAGAAAGCCGCTCAGATCCGGTCCCAGGTTATGACACACCTCCGTGTGATTTATGAGCGCATGAA amyloid beta (A4) precursor protein Endogenous
ALAS1 ALAS1 NM_000688.4 Cofactor Metabolic Process,Biosynthetic Process,Cellular Biosynthetic Process,Secondary Metabolic Process,Heme Biosynthetic Process,Pigment Biosynthetic Process,Pigment Metabolic Process,Heterocycle Metabolic Process,Cofactor Biosynthetic Process,Heme Metabolic Process AAGGAACTAAAAGGAAAGATTCCCGATGTGCCAGGATTCTCCTGGGTGACTCCCTGTATATCTGCCAAGGATATTGTGTATATTGGCTTGAGAGACGTGG arginase, liver Endogenous
APP APP NM_000484.3 Intrinsic To Plasma Membrane,Cell Surface,Extracellular Region,Intrinsic To Membrane,Membrane Part,Membrane,Integral To Membrane,Integral To Plasma Membrane,Plasma Membrane Part,Plasma Membrane,Regulation Of Biological Quality,Cellular Cation Homeostasis,Homeostatic Process,Cellular Homeostasis,Chemical Homeostasis,Ion Homeostasis,Cation H ATCAGAAAATCAAGCACGTGTGAGAATTTAGGAGACACTGTGCACTGACATGTTTCACAACAGGCATTCCAGAATTATGAGGCATTGAGGGGATAGATGA arginase, type II Endogenous
ARG1 ARG1 NM_000045.2 Cytoplasm,Carboxylic Acid Metabolic Process,Glutamine Family Amino Acid Metabolic Process,Amino Acid Metabolic Process,Cellular Catabolic Process,Organic Acid Metabolic Process,Nitrogen Compound Metabolic Process,Amino Acid Catabolic Process,Amine Catabolic Process,Amino Acid And Derivative Metabolic Process,Amine Metabolic Process,Catabol ATGCATCTTTTCCCACCCTGTCACTCAACGTGGTCCCTAGAACAAGAGGCTTAAAACCGGGCTTTCACCCAACCTGCTCCCTCTGATCCTCCATCAGGGC Rho GDP dissociation inhibitor (GDI) beta Endogenous
ARG2 ARG2 NM_001172.3 Cytoplasmic Part,Cytoplasm,Mitochondrion,Hydrolase Activity Acting On Carbon Nitrogen Not Peptidebonds TCAACTATATCACATCATGGCTGAGCATTGTAGGGCCAGTTGTTGGGCTGAATCTACCTCTGAGTTATGCCAAAGCAACGTCTCAGGATGAACGAAATGT ATG10 autophagy related 10 homolog (S. cerevisiae) Endogenous
ARHGDIB ARHGDIB NM_001175.4 Membrane Bound Vesicle,Cytoplasmic Part,Cytoplasm,Non Membrane Bound Organelle,Vesicle,Cytoskeleton,Cytoplasmic Vesicle,Cytoplasmic Membrane Bound Vesicle,Intracellular Non Membrane Bound Organelle,Signal Transduction,Organelle Organization And Biogenesis,Actin Filament Based Process,Negative Regulation Of Cellular Process,Regulation Of Ce CCGCTCCTCTCCCGAGGTCTGTAGTCGCGGAGAAACACATGTTGCGTTACTAACGTTCAGAGGTCTGCGACAGCTTCGATTTGAATGACTAGCCGGGAAC ATG12 autophagy related 12 homolog (S. cerevisiae) Endogenous
ATG10 ATG10 NM_001131028.1 null CCTTCCAAAGTCGGTTCTGGCCTAACGCATGTCCCAACACCTTGGGTTCATTTGCCCGGTGAACTCACTTTAAGCATTGGATTAACGGAAACTCCCGAAC ATG16 autophagy related 16-like 1 (S. cerevisiae) Endogenous
ATG12 ATG12 NM_004707.2 Cytoplasm,Cell Development,Biopolymer Metabolic Process,Programmed Cell Death,Cellular Protein Metabolic Process,Biopolymer Modification,Protein Metabolic Process,Protein Modification Process,Cellular Macromolecule Metabolic Process,Apoptosis Go TGCAGTGGCTGAGTGAACATCTGAGCTACCCGGATAATTTTCTTCATATTAGTATCATCCCACAGCCAACAGATTGAAGGATCAACTATTTGCCTGAACA ATG5 autophagy related 5 homolog (S. cerevisiae) Endogenous
ATG16L1 ATG16L1 NM_198890.2 null TATGATCCCTGTAACTTAGCCCAGTACCCTGGATGGCCTTTGAGGAATTTTTTGGTCCTAGCAGCCCACAGATGGAGTAGCAGTTTCCAGTCTGTTGAAG ATG7 autophagy related 7 homolog (S. cerevisiae) Endogenous
ATG5 ATG5 NM_004849.2 Cytoplasmic Part,Cytoplasm,Vacuole ACGCTAAGTCGCTGGCCATTGGTGGACATGGCGCAGGCGCGTTTGCTCCGACGGGCCGAATGTTTTGGGGCAGTGTTTTGAGCGCGGAGACCGCGTGATA ataxia telangiectasia mutated Endogenous
ATG7 ATG7 NM_001136031.2 Cytoplasm,Biopolymer Metabolic Process,Biosynthetic Process,Regulation Of Protein Modification Process,Regulation Of Protein Metabolic Process,Lipoprotein Metabolic Process,Positive Regulation Of Cellular Protein Metabolic Process,Regulation Of Cellular Metabolic Process,Membrane Organization And Biogenesis,Positive Regulation Of Metabolic TACTGAAGAATGGAGAGAGAATTGAAAAAGTGGAGCATTCAGACTTGTCTTTCAGCAAGGACTGGTCTTTCTATCTCTTGTACTACACTGAATTCACCCC beta-2-microglobulin Endogenous
ATM ATM NM_000051.3 Dna Metabolic Process,Dna Repair,Mitotic Cell Cycle Checkpoint,Biopolymer Metabolic Process,Meiosis I,Signal Transduction,Nucleobasenucleosidenucleotide And Nucleic Acid Metabolic Process,Response To Endogenous Stimulus,M Phase,Regulation Of Mitosis,Cell Cycle Process,Meiotic Cell Cycle,Mitotic Cell Cycle,Cell Cycle Phase,Cell Cycle Checkp GAGGGAGGCCTGAGCACACTGCTTTGGAAATTATTCTAAACACAAAAAAGGGAAAGAAAATGTTATTTCTCCCTAAGTCAGGAGCATGCAGAGCTAGCCC beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) Endogenous
B2M B2M NM_004048.2 null CCTGGCAAACAGGACTCATCTGATGATGTGAGAAGAGTTCAGAGGAGGGAGAAAAATCGTATTGCCGCCCAGAAGAGCCGACAGAGGCAGACACAGAAGG basic leucine zipper transcription factor, ATF-like Endogenous
B3GAT1 B3GAT1 NM_018644.3 Intrinsic To Membrane,Membrane Part,Membrane,Integral To Membrane,Carbohydrate Metabolic Process ACATCCAACAGGCGCCAAACTCACAGAGCCCTTGTGCAGATCCAGCATGGAGGCCACCCTCAGGAGTGACTTCTCATCCACCCTGGCAGCTAGTAGGTTC basic leucine zipper transcription factor, ATF-like 3 Endogenous

Total number of rows: 608

Table truncated, full table size 234 Kbytes.




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