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Platform GPL22129 Query DataSets for GPL22129
Status Public on Jan 01, 2017
Title 110404_MM9_BH_ChIP_HX3
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site www.nimblegen.com
 
Description NCBI mouse mm9
 
Submission date Jul 07, 2016
Last update date Jan 01, 2017
Contact name Rob S Illingworth
E-mail(s) robert.illingworth@ed.ac.uk
Phone 01316519640
Organization name The University of Edinburgh
Department Centre for regenerative Medicine
Lab Illingworth
Street address Centre for Regenerative Medicine
City Edinburgh
State/province Midlothian
ZIP/Postal code EH16 4UU
Country United Kingdom
 
Samples (8) GSM2228445, GSM2228446, GSM2228447, GSM2228448, GSM2228449, GSM2228450 
Series (1)
GSE84168 Identification of a novel long-range enhancer driving Sonic Hedgehog expression in neural progenitor cells

Data table header descriptions
ID
SEQUENCE Oligo Probe Sequence
Chromosome Probe Chromosomal location
GB_RANGE
RANGE_START Chromosomal start position of oligo (mm9)
RANGE_END Chromosomal end position of oligo (mm9)
LENGTH Oligo length

Data table
ID SEQUENCE Chromosome GB_RANGE RANGE_START RANGE_END LENGTH
CHR10FS126746006 CCCACAAAACAATGTCAGCTAGAGATTCTGTGTCCTAGTTGGAGAAGAGA chr10 NC_000076.5 126746006 126746056 50
CHR10FS126746061 GCACAGGTGAAGCATTCATCTATGTCCCAATAGTGATAGCTAACCTTTGCTA chr10 NC_000076.5 126746061 126746113 52
CHR10FS126746111 TACTGCCCCGGCTGTCCTTGCCAGTCTGACCTTACTTGCAGAGATCTGCC chr10 NC_000076.5 126746111 126746161 50
CHR10FS126746171 TCCAGAATCCTCGGATTCAATGCATGTGCCACCATACCCACCTTTTCATT chr10 NC_000076.5 126746171 126746221 50
CHR10FS126746246 TTTGTTTGTTTAAATAAGGTGTCACATAGCTCCAGCTGTCCTGTCCTGAGC chr10 NC_000076.5 126746246 126746297 51
CHR10FS126746371 TGGCCTGAGCCCCTGTCCAACTGTCCTGAGCCCCTGTCTAGCTGGCCTGA chr10 NC_000076.5 126746371 126746421 50
CHR10FS126746426 TGTCCAGCTGGCCTGATCCCCTGTCCAGCTGTCCTGAACCCTTGTCTAGC chr10 NC_000076.5 126746426 126746476 50
CHR10FS126746526 GCCCCTGTCCAGCTGGCCTGAGCCCCTGTGCATCCAAGGACGGCTTTGAA chr10 NC_000076.5 126746526 126746576 50
CHR10FS126746576 CTTCTGATCCTTTTGTTTCTACCTCCCAAAAGTCGGGATTACAAATGTGTGC chr10 NC_000076.5 126746576 126746628 52
CHR10FS126746631 CATGCAGAGTTTTTGCTTTCTATGTGCCAAGTACTAAGTGAGTCAATGTGTGCTTTCTAACATA chr10 NC_000076.5 126746631 126746695 64
CHR10FS126746681 TGCTTTCTAACATAATCCTTAAGATAGCTCTAACTATGGCAGGAACTATCACTTCCATTTCA chr10 NC_000076.5 126746681 126746743 62
CHR10FS126746761 AATAAAATCAAGGACTAGTTGTGGCACAGGCCTTTGATCCCAACACCTGG chr10 NC_000076.5 126746761 126746811 50
CHR10FS126746906 TAAAAACAAAAACGATAACAAAAATGAAGAATTAGTGGGTTTAAGTAATG chr10 NC_000076.5 126746906 126746956 50
CHR10FS126746956 TGTCAAGGTTACCACGCTAATAATTAGTTGTTGGGGTCTGAATACACTTTCCC chr10 NC_000076.5 126746956 126747009 53
CHR10FS126747011 CAAAGTCCTGTATCATAAGCCTTCCAGACCCCACTTCAAGTCAACTCACC chr10 NC_000076.5 126747011 126747061 50
CHR10FS126747066 CAGGAAAGGACAGTTTTGACGACTCAAGCTGTGATCAATGTGAGTCAGGA chr10 NC_000076.5 126747066 126747116 50
CHR10FS126747121 CGAAGTGGGCCAAGTATATCTTCCCCTTTCTTGCCTTGAACCACTAGACA chr10 NC_000076.5 126747121 126747171 50
CHR10FS126747176 GGGCAGCAGACAGAACTGGCTAAAATGCAGGGGAAATGGGTCAGGATGTT chr10 NC_000076.5 126747176 126747226 50
CHR10FS126747231 AGAGGAAGGACAGGCTGCCCTCACCTCCCTGATACACGGATTCACCTGCA chr10 NC_000076.5 126747231 126747281 50
CHR10FS126747281 GTTCTGTTGCCTCCCATTCCAGCCACTGGTTGGTGAGATCATCTTGTTCC chr10 NC_000076.5 126747281 126747331 50

Total number of rows: 354999

Table truncated, full table size 38329 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL22129_110404_MM9_BH_ChIP.ndf.gz 40.3 Mb (ftp)(http) NDF
GPL22129_110404_MM9_BH_ChIP.pos.gz 2.7 Mb (ftp)(http) POS

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