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Platform GPL22307 Query DataSets for GPL22307
Status Public on Jan 01, 2017
Title Agilent-037376 lincRNA PJ final
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16037376 or 2537376.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Aug 10, 2016
Last update date Jan 01, 2017
Contact name Pieter-Jan Volders
E-mail(s) pieterjan.volders@ugent.be
Organization name Ghent University
Street address De Pintelaan 185
City Gent
ZIP/Postal code 9000
Country Belgium
 
Samples (80) GSM2267074, GSM2267075, GSM2267076, GSM2267077, GSM2267078, GSM2267079 
Series (1)
GSE85444 Targeted genomic screen reveals focal long non-coding RNA copy number alterations in cancer

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
PROBE NAME
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
SEQUENCE
SPOT_ID Spot identifier
ORDER

Data table
ID COL ROW PROBE NAME CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION SEQUENCE SPOT_ID ORDER
1 532 340 HsCGHBrightCorner pos CONTROL 1
2 532 338 DarkCorner2 pos CONTROL 2
3 532 336 DarkCorner2 pos CONTROL 3
4 532 334 DarkCorner2 pos CONTROL 4
5 532 332 DarkCorner2 pos CONTROL 5
6 532 330 DarkCorner2 pos CONTROL 6
7 532 328 DarkCorner2 pos CONTROL 7
8 532 326 DarkCorner2 pos CONTROL 8
9 532 324 DarkCorner2 pos CONTROL 9
10 532 322 DarkCorner2 pos CONTROL 10
11 532 320 DarkCorner2 pos CONTROL 11
12 532 318 DarkCorner2 pos CONTROL 12
13 532 316 DarkCorner2 pos CONTROL 13
14 532 314 DarkCorner2 pos CONTROL 14
15 532 312 DarkCorner2 pos CONTROL 15
16 532 310 DarkCorner2 pos CONTROL 16
17 532 308 DarkCorner2 pos CONTROL 17
18 532 306 DarkCorner2 pos CONTROL 18
19 532 304 DarkCorner2 pos CONTROL 19
20 532 302 DarkCorner2 pos CONTROL 20

Total number of rows: 180880

Table truncated, full table size 24587 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
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