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Platform GPL22388 Query DataSets for GPL22388
Status Public on Aug 30, 2016
Title [RTA-1_0] Affymetrix Rat Transcriptome Array 1.0 [transcript (gene) CSV version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Rattus norvegicus
Manufacturer Affymetrix
Manufacture protocol See manufacturers website
 
Description Annotation was derived from the Affymetrix annotation file RTA-1_0.na36.rn6.transcript.csv:

#%create_date=Wed Jun 8 16:48:57 2016 PDT
#%chip_type=RTA-1_0
#%lib_set_name=RTA-1_0
#%lib_set_version=r1
#%genome-species=Rattus norvegicus
#%genome-version=rn6
#%genome-version-ucsc=rn6
#%genome-version-ncbi=Rnor_6.0
#%genome-version-create_date=2014-07-30
#%genome-lifted-method=psl-map.pl
#%genome-lifted_from-species=Rattus norvegicus
#%genome-lifted_from-version-ucsc=rn6
#%genome-lifted_from-version-ncbi=Rnor_6.0
#%netaffx-annotation-date=2016-03-15
#%netaffx-annotation-netaffx-build=36
#%netaffx-annotation-data-type=transcript_cluster

 
Submission date Aug 30, 2016
Last update date Feb 23, 2017
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (710) GSM2300293, GSM2300294, GSM2300295, GSM2300296, GSM2300297, GSM2300298 
Series (48)
GSE86329 Increased expression of proenkephalin and prodynorphin mRNAs in the nucleus accumbens of compulsive methamphetamine taking rats
GSE86350 Expression data from brain stem of rats with and without rotenone treatment
GSE86351 Expression data from hearts (lest ventricle apex) of rats with and without rotenone treatment

Data table header descriptions
ID transcript_cluster_id
probeset_id
seqname
strand
start
stop
total_probes
gene_assignment
mrna_assignment
swissprot
unigene
GO_biological_process
GO_cellular_component
GO_molecular_function
pathway
protein_domains
category
SPOT_ID

Data table
ID probeset_id seqname strand start stop total_probes gene_assignment mrna_assignment swissprot unigene GO_biological_process GO_cellular_component GO_molecular_function pathway protein_domains category SPOT_ID
TC0100000001.rn.1 TC0100000001.rn.1 chr1 + 185734 186251 30 blerpey.aSep08-unspliced // blerpey // Unannotated AceView Transcript // --- // --- blerpey.aSep08-unspliced // Ace View // Unannotated AceView Transcript // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main Unassigned
TC0100000002.rn.1 TC0100000002.rn.1 chr1 + 238215 241565 29 mRNARGD7689164_1 // LOC102556184 // uncharacterized LOC102556184 // --- // --- mRNARGD7689164_1 // Rat Genome Database // uncharacterized LOC102556184 // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main NonCoding
TC0100000003.rn.1 TC0100000003.rn.1 chr1 + 294743 299350 30 MTA_TR1000009985.mm // KnowTID_00001103 // Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc // --- // --- MTA_TR1000009985.mm // MTA2Rn6 // Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main NonCoding
TC0100000005.rn.1 TC0100000005.rn.1 chr1 + 510763 511426 30 MTA_TR1100009352.mm // NONMMUG005666 // Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al. // --- // --- MTA_TR1100009352.mm // MTA2Rn6 // Non-coding transcript identified by NONCODE: Linc, Non-coding transcript identified by Luo, et al. // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main NonCoding
TC0100000006.rn.1 TC0100000006.rn.1 chr1 + 699413 708065 60 Vom2r5.aSep08 // Vom2r5 // vomeronasal 2 receptor, 5 // --- // 679691 Vom2r5.aSep08 // Ace View // vomeronasal 2 receptor, 5 // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000072360 // ENSEMBL // vomeronasal type-2 receptor 26-like [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD6502594_1 // Rat Genome Database // ENCODES a protein that exhibits G-protein coupled receptor activity (inferred) AND INVOLVED IN G-protein coupled receptor signaling pathway (inferred) AND FOUND IN integral component of membrane (inferred) AND plasma membrane (inferred) // chr1 // 100 // 100 // 0 // --- // 0 ENSRNOT00000072360 // M0R4U9 --- ENSRNOT00000072360 // GO:0007186 // G-protein coupled receptor signaling pathway // inferred from electronic annotation /// ENSRNOT00000072360 // GO:0007165 // signal transduction // inferred from electronic annotation ENSRNOT00000072360 // GO:0005886 // plasma membrane // inferred from electronic annotation /// ENSRNOT00000072360 // GO:0016021 // integral component of membrane // inferred from electronic annotation /// ENSRNOT00000072360 // GO:0016020 // membrane // inferred from electronic annotation ENSRNOT00000072360 // GO:0004930 // G-protein coupled receptor activity // inferred from electronic annotation /// ENSRNOT00000072360 // GO:0004871 // signal transducer activity // inferred from electronic annotation --- ENSRNOT00000072360 // Pfam // IPR001828 // Receptor, ligand binding region /// ENSRNOT00000072360 // Pfam // IPR011500 // GPCR, family 3, nine cysteines domain /// ENSRNOT00000072360 // Pfam // IPR017978 // GPCR family 3, C-terminal main Multiple_Complex
TC0100000007.rn.1 TC0100000007.rn.1 chr1 + 871774 1573470 30 MTA_TR0700008283.mm // ENSMUSG00000092189 // predicted gene 3644, Non-coding transcript identified by NONCODE: Linc, vomeronasal receptor pseudogene // --- // --- MTA_TR0700008283.mm // MTA2Rn6 // predicted gene 3644, Non-coding transcript identified by NONCODE: Linc, vomeronasal receptor pseudogene // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main Multiple_Complex
TC0100000008.rn.1 TC0100000008.rn.1 chr1 + 1115869 1115990 30 MTA_TR1600003251.mm // ENSMUSG00000064471 // predicted gene, 23406 // --- // --- /// MTA_TR1900002441.mm // ENSMUSG00000065204 // predicted gene, 24610 // --- // --- MTA_TR1600003251.mm // MTA2Rn6 // predicted gene, 23406 // chr1 // 100 // 100 // 0 // --- // 0 /// MTA_TR1900002441.mm // MTA2Rn6 // predicted gene, 24610 // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main Small_RNA
TC0100000009.rn.1 TC0100000009.rn.1 chr1 + 1131862 1216809 30 NM_029975 // Ulbp1 // UL16 binding protein 1 (Ulbp1), mRNA. // --- // --- NM_029975 // Mm2Rn5 // UL16 binding protein 1 (Ulbp1), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main Coding
TC0100000010.rn.1 TC0100000010.rn.1 chr1 + 1181301 1200532 40 mRNARGD7725182_1 // LOC102548267 // ENCODES a protein that exhibits natural killer cell lectin-like receptor binding (ortholog) AND INVOLVED IN cellular response to exogenous dsRNA (ortholog) AND cellular response to lipopolysaccharide (ortholog) AND defense response to bacterium (ortholog) AND FOUND IN external side of plasma membrane (ortholog) AND INTERACTS WITH (S)-nicotine (ortholog) AND 4-hydroxynon-2-enal (ortholog) AND aflatoxin B1 (ortholog) // --- // 102548267 mRNARGD7725182_1 // Rat Genome Database // ENCODES a protein that exhibits natural killer cell lectin-like receptor binding (ortholog) AND INVOLVED IN cellular response to exogenous dsRNA (ortholog) AND cellular response to lipopolysaccharide (ortholog) AND defense response to bacterium (ortholog) AND FOUND IN external side of plasma membrane (ortholog) AND INTERACTS WITH (S)-nicotine (ortholog) AND 4-hydroxynon-2-enal (ortholog) AND aflatoxin B1 (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000029038 // ENSEMBL // Uncharacterized protein // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main Coding
TC0100000011.rn.1 TC0100000011.rn.1 chr1 + 1202412 1203952 30 mRNARGD7509853_1 // LOC102547056 // retinoic acid early-inducible protein 1-gamma-like // --- // 102547056 mRNARGD7509853_1 // Rat Genome Database // retinoic acid early-inducible protein 1-gamma-like // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main Coding
TC0100000012.rn.1 TC0100000012.rn.1 chr1 + 1211737 1212739 30 --- NONRATT000003 // NONCODE // Non-coding transcript identified by NONCODE // chr1 // 100 // 100 // 0 // --- // 0 /// NONRATT000003 // NONCODE // Non-coding transcript identified by NONCODE: Antisense // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main NonCoding
TC0100000013.rn.1 TC0100000013.rn.1 chr1 + 1218992 1220928 30 cheeflo.aSep08-unspliced // cheeflo // Unannotated AceView Transcript // --- // --- /// shuflo.aSep08-unspliced // shuflo // Unannotated AceView Transcript // --- // --- cheeflo.aSep08-unspliced // Ace View // Unannotated AceView Transcript // chr1 // 100 // 100 // 0 // --- // 0 /// shuflo.aSep08-unspliced // Ace View // Unannotated AceView Transcript // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main Unassigned
TC0100000014.rn.1 TC0100000014.rn.1 chr1 + 1545134 1546178 30 --- ENSRNOT00000044523 // ENSEMBL // Uncharacterized protein [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 ENSRNOT00000044523 // M0RAB1 --- ENSRNOT00000044523 // GO:0008152 // metabolic process // inferred from electronic annotation /// ENSRNOT00000044523 // GO:0006812 // cation transport // inferred from electronic annotation ENSRNOT00000044523 // GO:0016021 // integral component of membrane // inferred from electronic annotation /// ENSRNOT00000044523 // GO:0016020 // membrane // inferred from electronic annotation ENSRNOT00000044523 // GO:0016887 // ATPase activity // inferred from electronic annotation --- ENSRNOT00000044523 // Pfam // IPR006544 // P-type ATPase, subfamily V main Coding
TC0100000015.rn.1 TC0100000015.rn.1 chr1 + 1617385 1619634 40 ENSRNOT00000062030 // LOC679782 // similar to Retinoic acid early inducible protein 1 delta precursor (RAE-1delta) [Source:RGD Symbol;Acc:1584760] // --- // --- ENSRNOT00000062030 // ENSEMBL // similar to Retinoic acid early inducible protein 1 delta precursor (RAE-1delta) [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 ENSRNOT00000062030 // D3ZL40 --- ENSRNOT00000062030 // GO:0001913 // T cell mediated cytotoxicity // --- /// ENSRNOT00000062030 // GO:0002474 // antigen processing and presentation of peptide antigen via MHC class I // --- /// ENSRNOT00000062030 // GO:0042267 // natural killer cell mediated cytotoxicity // --- /// ENSRNOT00000062030 // GO:0006955 // immune response // inferred from electronic annotation ENSRNOT00000062030 // GO:0005886 // plasma membrane // --- ENSRNOT00000062030 // GO:0042605 // peptide antigen binding // --- /// ENSRNOT00000062030 // GO:0046703 // natural killer cell lectin-like receptor binding // --- --- ENSRNOT00000062030 // Pfam // IPR029287 // Retinoic acid early-inducible protein 1 main Coding
TC0100000016.rn.1 TC0100000016.rn.1 chr1 + 1636892 1639147 30 --- ENSRNOT00000028945 // ENSEMBL // N/A // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main Pseudogene
TC0100000017.rn.1 TC0100000017.rn.1 chr1 + 1639395 1639811 30 LOC680016.aSep08-unspliced // LOC680016 // similar to feminization 1 homolog b // --- // --- LOC680016.aSep08-unspliced // Ace View // similar to feminization 1 homolog b // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main Unassigned
TC0100000018.rn.1 TC0100000018.rn.1 chr1 + 1669955 1670198 30 MTA_TR1000005850.mm // KnowTID_00000895 // Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc // --- // --- MTA_TR1000005850.mm // MTA2Rn6 // Non-coding transcript identified by Luo, et al., Non-coding transcript identified by NONCODE: Linc // chr1 // 100 // 100 // 0 // --- // 0 --- --- --- --- --- --- --- main NonCoding
TC0100000019.rn.1 TC0100000019.rn.1 chr1 + 1671262 1731215 165 NM_001106217 // Lrp11 // low density lipoprotein receptor-related protein 11 // 1p13 // 292462 /// ENSRNOT00000019181 // Lrp11 // low density lipoprotein receptor-related protein 11 // 1p13 // 292462 /// Lrp11.aSep08 // Lrp11 // low density lipoprotein receptor-related protein 11 // --- // 292462 /// Lrp11.cSep08 // Lrp11 // low density lipoprotein receptor-related protein 11 // --- // 292462 /// Lrp11.dSep08-unspliced // Lrp11 // low density lipoprotein receptor-related protein 11 // --- // 292462 /// mRNARGD4123404_1 // Lrp11 // INTERACTS WITH all-trans-retinoic acid AND cisplatin AND (-)-epigallocatechin 3-gallate (ortholog) // --- // 292462 /// TCONS_00000004 // Lrp11 // Chalmel, et. al. AceView Annotation Lrp11.cSep08 // --- // 292462 NM_001106217 // RefSeq // Rattus norvegicus low density lipoprotein receptor-related protein 11 (Lrp11), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000019181 // ENSEMBL // low density lipoprotein receptor-related protein 11 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// Lrp11.aSep08 // Ace View // low density lipoprotein receptor-related protein 11 // chr1 // 100 // 100 // 0 // --- // 0 /// Lrp11.cSep08 // Ace View // low density lipoprotein receptor-related protein 11 // chr1 // 100 // 100 // 0 // --- // 0 /// Lrp11.dSep08-unspliced // Ace View // low density lipoprotein receptor-related protein 11 // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD4123404_1 // Rat Genome Database // INTERACTS WITH all-trans-retinoic acid AND cisplatin AND (-)-epigallocatechin 3-gallate (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_00000004 // Chalmel // Chalmel, et. al. AceView Annotation Lrp11.cSep08 // chr1 // 100 // 100 // 0 // --- // 0 /// bloflo.aSep08-unspliced // Ace View // Unannotated AceView Transcript // chr1 // 100 // 100 // 0 // --- // 0 NM_001106217 // F1M753 /// ENSRNOT00000019181 // F1M753 NM_001106217 // Rn.40930 // adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| small intestine| spleen| metamorphosing embryo| fetus| juvenile| adult /// ENSRNOT00000019181 // Rn.40930 // adrenal gland| brain| colon| connective tissue| dorsal root ganglion| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| small intestine| spleen| metamorphosing embryo| fetus| juvenile| adult NM_001106217 // GO:0009408 // response to heat // inferred from electronic annotation /// NM_001106217 // GO:0009408 // response to heat // not recorded /// NM_001106217 // GO:0009409 // response to cold // inferred from electronic annotation /// NM_001106217 // GO:0009409 // response to cold // not recorded /// NM_001106217 // GO:0009414 // response to water deprivation // inferred from electronic annotation /// NM_001106217 // GO:0009414 // response to water deprivation // not recorded /// NM_001106217 // GO:0009612 // response to mechanical stimulus // inferred from electronic annotation /// NM_001106217 // GO:0009612 // response to mechanical stimulus // not recorded /// NM_001106217 // GO:0033555 // multicellular organismal response to stress // inferred from electronic annotation /// NM_001106217 // GO:0033555 // multicellular organismal response to stress // not recorded /// NM_001106217 // GO:0035902 // response to immobilization stress // inferred from electronic annotation /// NM_001106217 // GO:0035902 // response to immobilization stress // not recorded /// NM_001106217 // GO:0042594 // response to starvation // inferred from electronic annotation /// NM_001106217 // GO:0042594 // response to starvation // not recorded /// ENSRNOT00000019181 // GO:0009408 // response to heat // inferred from electronic annotation /// ENSRNOT00000019181 // GO:0009408 // response to heat // not recorded /// ENSRNOT00000019181 // GO:0009409 // response to cold // inferred from electronic annotation /// ENSRNOT00000019181 // GO:0009409 // response to cold // not recorded /// ENSRNOT00000019181 // GO:0009414 // response to water deprivation // inferred from electronic annotation /// ENSRNOT00000019181 // GO:0009414 // response to water deprivation // not recorded /// ENSRNOT00000019181 // GO:0009612 // response to mechanical stimulus // inferred from electronic annotation /// ENSRNOT00000019181 // GO:0009612 // response to mechanical stimulus // not recorded /// ENSRNOT00000019181 // GO:0033555 // multicellular organismal response to stress // inferred from electronic annotation /// ENSRNOT00000019181 // GO:0033555 // multicellular organismal response to stress // not recorded /// ENSRNOT00000019181 // GO:0035902 // response to immobilization stress // inferred from electronic annotation /// ENSRNOT00000019181 // GO:0035902 // response to immobilization stress // not recorded /// ENSRNOT00000019181 // GO:0042594 // response to starvation // inferred from electronic annotation /// ENSRNOT00000019181 // GO:0042594 // response to starvation // not recorded NM_001106217 // GO:0016021 // integral component of membrane // inferred from electronic annotation /// NM_001106217 // GO:0016020 // membrane // inferred from electronic annotation /// ENSRNOT00000019181 // GO:0016021 // integral component of membrane // inferred from electronic annotation /// ENSRNOT00000019181 // GO:0016020 // membrane // inferred from electronic annotation NM_001106217 // GO:0051219 // phosphoprotein binding // inferred from electronic annotation /// NM_001106217 // GO:0051219 // phosphoprotein binding // not recorded /// ENSRNOT00000019181 // GO:0051219 // phosphoprotein binding // inferred from electronic annotation /// ENSRNOT00000019181 // GO:0051219 // phosphoprotein binding // not recorded --- ENSRNOT00000019181 // Pfam // IPR002172 // Low-density lipoprotein (LDL) receptor class A repeat main Coding
TC0100000020.rn.1 TC0100000020.rn.1 chr1 + 1771704 1781554 80 NM_001128191 // Nup43 // nucleoporin 43 // --- // 683983 /// ENSRNOT00000073528 // Nup43 // nucleoporin 43 // --- // 683983 /// BC158756 // Nup43 // nucleoporin 43 // --- // 683983 /// mRNARGD4126661_1 // Nup43 // PARTICIPATES IN RNA transport pathway AND FOUND IN kinetochore (ortholog) AND nuclear pore outer ring (ortholog) AND INTERACTS WITH thioacetamide AND 1-chloro-2 4-dinitrobenzene (ortholog) AND 17beta-estradiol (ortholog) // --- // 683983 /// mRNARGD7515978_1 // Nup43 // PARTICIPATES IN RNA transport pathway AND FOUND IN kinetochore (ortholog) AND nuclear pore outer ring (ortholog) AND INTERACTS WITH thioacetamide AND 1-chloro-2 4-dinitrobenzene (ortholog) AND 17beta-estradiol (ortholog) // --- // 683983 NM_001128191 // RefSeq // Rattus norvegicus nucleoporin 43 (Nup43), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000073528 // ENSEMBL // nucleoporin 43 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// BC158756 // GenBank // Rattus norvegicus similar to Nucleoporin Nup43, mRNA (cDNA clone MGC:187947 IMAGE:9103164), complete cds. // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD4126661_1 // Rat Genome Database // PARTICIPATES IN RNA transport pathway AND FOUND IN kinetochore (ortholog) AND nuclear pore outer ring (ortholog) AND INTERACTS WITH thioacetamide AND 1-chloro-2 4-dinitrobenzene (ortholog) AND 17beta-estradiol (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD7515978_1 // Rat Genome Database // PARTICIPATES IN RNA transport pathway AND FOUND IN kinetochore (ortholog) AND nuclear pore outer ring (ortholog) AND INTERACTS WITH thioacetamide AND 1-chloro-2 4-dinitrobenzene (ortholog) AND 17beta-estradiol (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 NM_001128191 // B0BNB5 /// NM_001128191 // M0R9Y3 /// ENSRNOT00000073528 // M0R9Y3 /// ENSRNOT00000073528 // B0BNB5 /// BC158756 // B0BNB5 NM_001128191 // Rn.216533 // colon| connective tissue| dorsal root ganglion| embryonic tissue| heart| kidney| ovary| pancreas| small intestine| spleen| testis|tailbud embryo| juvenile| adult /// ENSRNOT00000073528 // Rn.216533 // colon| connective tissue| dorsal root ganglion| embryonic tissue| heart| kidney| ovary| pancreas| small intestine| spleen| testis|tailbud embryo| juvenile| adult /// BC158756 // Rn.216533 // colon| connective tissue| dorsal root ganglion| embryonic tissue| heart| kidney| ovary| pancreas| small intestine| spleen| testis|tailbud embryo| juvenile| adult NM_001128191 // GO:0008150 // biological_process // no biological data available /// ENSRNOT00000073528 // GO:0008150 // biological_process // no biological data available /// BC158756 // GO:0008150 // biological_process // no biological data available NM_001128191 // GO:0000776 // kinetochore // inferred from electronic annotation /// NM_001128191 // GO:0000776 // kinetochore // not recorded /// NM_001128191 // GO:0031080 // nuclear pore outer ring // not recorded /// NM_001128191 // GO:0005575 // cellular_component // no biological data available /// ENSRNOT00000073528 // GO:0000776 // kinetochore // inferred from electronic annotation /// ENSRNOT00000073528 // GO:0000776 // kinetochore // not recorded /// ENSRNOT00000073528 // GO:0031080 // nuclear pore outer ring // not recorded /// ENSRNOT00000073528 // GO:0005575 // cellular_component // no biological data available /// BC158756 // GO:0000776 // kinetochore // inferred from electronic annotation /// BC158756 // GO:0000776 // kinetochore // not recorded /// BC158756 // GO:0031080 // nuclear pore outer ring // not recorded /// BC158756 // GO:0005575 // cellular_component // no biological data available NM_001128191 // GO:0003674 // molecular_function // no biological data available /// ENSRNOT00000073528 // GO:0003674 // molecular_function // no biological data available /// BC158756 // GO:0003674 // molecular_function // no biological data available --- ENSRNOT00000073528 // Pfam // IPR001680 // WD40 repeat /// ENSRNOT00000073528 // Pfam // IPR001680 // WD40 repeat main Coding
TC0100000021.rn.1 TC0100000021.rn.1 chr1 + 1784078 1817317 150 NM_001134543 // Lats1 // large tumor suppressor kinase 1 // 1p13 // 308265 /// ENSRNOT00000020098 // Lats1 // large tumor suppressor kinase 1 // 1p13 // 308265 /// mRNARGD4137748_1 // Lats1 // ENCODES a protein that exhibits ATP binding (ortholog) AND magnesium ion binding (ortholog) AND protein kinase binding (ortholog) AND INVOLVED IN cellular protein localization (ortholog) AND cytoplasmic sequestering of protein (ortholog) AND G2/M transition of mitotic cell cycle (ortholog) AND FOUND IN intracellular (ortholog) AND spindle pole (ortholog) AND INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog) AND 5-aza-2'-deoxycytidine (ortholog) AND bisphenol A (ortholog) // --- // 308265 /// mRNARGD7641352_1 // Lats1 // ENCODES a protein that exhibits ATP binding (ortholog) AND magnesium ion binding (ortholog) AND protein kinase binding (ortholog) AND INVOLVED IN cellular protein localization (ortholog) AND cytoplasmic sequestering of protein (ortholog) AND G2/M transition of mitotic cell cycle (ortholog) AND FOUND IN intracellular (ortholog) AND spindle pole (ortholog) AND INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog) AND 5-aza-2'-deoxycytidine (ortholog) AND bisphenol A (ortholog) // --- // 308265 /// mRNARGD7641353_1 // Lats1 // ENCODES a protein that exhibits ATP binding (ortholog) AND magnesium ion binding (ortholog) AND protein kinase binding (ortholog) AND INVOLVED IN cellular protein localization (ortholog) AND cytoplasmic sequestering of protein (ortholog) AND G2/M transition of mitotic cell cycle (ortholog) AND FOUND IN intracellular (ortholog) AND spindle pole (ortholog) AND INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog) AND 5-aza-2'-deoxycytidine (ortholog) AND bisphenol A (ortholog) // --- // 308265 /// RGD1564085.aSep08 // Lats1 // large tumor suppressor kinase 1 // --- // 308265 /// TCONS_00000007 // Lats1 // large tumor suppressor kinase 1 (Lats1), mRNA. // --- // 308265 NM_001134543 // RefSeq // Rattus norvegicus large tumor suppressor kinase 1 (Lats1), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// ENSRNOT00000020098 // ENSEMBL // large tumor suppressor kinase 1 [gene_biotype:protein_coding transcript_biotype:protein_coding] // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD4137748_1 // Rat Genome Database // ENCODES a protein that exhibits ATP binding (ortholog) AND magnesium ion binding (ortholog) AND protein kinase binding (ortholog) AND INVOLVED IN cellular protein localization (ortholog) AND cytoplasmic sequestering of protein (ortholog) AND G2/M transition of mitotic cell cycle (ortholog) AND FOUND IN intracellular (ortholog) AND spindle pole (ortholog) AND INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog) AND 5-aza-2'-deoxycytidine (ortholog) AND bisphenol A (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD7641352_1 // Rat Genome Database // ENCODES a protein that exhibits ATP binding (ortholog) AND magnesium ion binding (ortholog) AND protein kinase binding (ortholog) AND INVOLVED IN cellular protein localization (ortholog) AND cytoplasmic sequestering of protein (ortholog) AND G2/M transition of mitotic cell cycle (ortholog) AND FOUND IN intracellular (ortholog) AND spindle pole (ortholog) AND INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog) AND 5-aza-2'-deoxycytidine (ortholog) AND bisphenol A (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// mRNARGD7641353_1 // Rat Genome Database // ENCODES a protein that exhibits ATP binding (ortholog) AND magnesium ion binding (ortholog) AND protein kinase binding (ortholog) AND INVOLVED IN cellular protein localization (ortholog) AND cytoplasmic sequestering of protein (ortholog) AND G2/M transition of mitotic cell cycle (ortholog) AND FOUND IN intracellular (ortholog) AND spindle pole (ortholog) AND INTERACTS WITH (-)-epigallocatechin 3-gallate (ortholog) AND 5-aza-2'-deoxycytidine (ortholog) AND bisphenol A (ortholog) // chr1 // 100 // 100 // 0 // --- // 0 /// RGD1564085.aSep08 // Ace View // large tumor suppressor kinase 1 // chr1 // 100 // 100 // 0 // --- // 0 /// TCONS_00000007 // Chalmel // large tumor suppressor kinase 1 (Lats1), mRNA. // chr1 // 100 // 100 // 0 // --- // 0 /// bleeflo.aSep08-unspliced // Ace View // Unannotated AceView Transcript // chr1 // 100 // 100 // 0 // --- // 0 NM_001134543 // F1M2K4 /// ENSRNOT00000020098 // F1M2K4 NM_001134543 // Rn.29152 // brain| colon| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult /// ENSRNOT00000020098 // Rn.29152 // brain| colon| embryonic tissue| eye| heart| kidney| liver| lung| ovary| pancreas| pineal gland| pituitary gland| placenta| prostate| thymus|tailbud embryo| metamorphosing embryo| fetus| juvenile| adult NM_001134543 // GO:0000082 // G1/S transition of mitotic cell cycle // not recorded /// NM_001134543 // GO:0000086 // G2/M transition of mitotic cell cycle // inferred from electronic annotation /// NM_001134543 // GO:0000086 // G2/M transition of mitotic cell cycle // not recorded /// NM_001134543 // GO:0000819 // sister chromatid segregation // inferred from electronic annotation /// NM_001134543 // GO:0000819 // sister chromatid segregation // not recorded /// NM_001134543 // GO:0001827 // inner cell mass cell fate commitment // not recorded /// NM_001134543 // GO:0001828 // inner cell mass cellular morphogenesis // not recorded /// NM_001134543 // GO:0006468 // protein phosphorylation // not recorded /// NM_001134543 // GO:0007067 // mitotic nuclear division // inferred from electronic annotation /// NM_001134543 // GO:0009755 // hormone-mediated signaling pathway // inferred from electronic annotation /// NM_001134543 // GO:0009755 // hormone-mediated signaling pathway // not recorded /// NM_001134543 // GO:0018105 // peptidyl-serine phosphorylation // not recorded /// NM_001134543 // GO:0030216 // keratinocyte differentiation // inferred from electronic annotation /// NM_001134543 // GO:0030216 // keratinocyte differentiation // not recorded /// NM_001134543 // GO:0030833 // regulation of actin filament polymerization // inferred from electronic annotation /// NM_001134543 // GO:0030833 // regulation of actin filament polymerization // not recorded /// NM_001134543 // GO:0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// NM_001134543 // GO:0033138 // positive regulation of peptidyl-serine phosphorylation // not recorded /// NM_001134543 // GO:0034613 // cellular protein localization // not recorded /// NM_001134543 // GO:0035329 // hippo signaling // not recorded /// NM_001134543 // GO:0043065 // positive regulation of apoptotic process // not recorded /// NM_001134543 // GO:0043254 // regulation of protein complex assembly // not recorded /// NM_001134543 // GO:0045736 // negative regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// NM_001134543 // GO:0045736 // negative regulation of cyclin-dependent protein serine/threonine kinase activity // not recorded /// NM_001134543 // GO:0046620 // regulation of organ growth // not recorded /// NM_001134543 // GO:0051220 // cytoplasmic sequestering of protein // inferred from electronic annotation /// NM_001134543 // GO:0051220 // cytoplasmic sequestering of protein // not recorded /// NM_001134543 // GO:0090090 // negative regulation of canonical Wnt signaling pathway // inferred from electronic annotation /// NM_001134543 // GO:0090090 // negative regulation of canonical Wnt signaling pathway // not recorded /// NM_001134543 // GO:0000082 // G1/S transition of mitotic cell cycle // --- /// NM_001134543 // GO:0006468 // protein phosphorylation // inferred from electronic annotation /// NM_001134543 // GO:0016310 // phosphorylation // inferred from electronic annotation /// NM_001134543 // GO:0018105 // peptidyl-serine phosphorylation // --- /// NM_001134543 // GO:0034613 // cellular protein localization // inferred from electronic annotation /// NM_001134543 // GO:0035329 // hippo signaling // --- /// NM_001134543 // GO:0035329 // hippo signaling // inferred from electronic annotation /// NM_001134543 // GO:0043065 // positive regulation of apoptotic process // --- /// NM_001134543 // GO:0043254 // regulation of protein complex assembly // inferred from electronic annotation /// NM_001134543 // GO:0046620 // regulation of organ growth // --- /// ENSRNOT00000020098 // GO:0000082 // G1/S transition of mitotic cell cycle // not recorded /// ENSRNOT00000020098 // GO:0000086 // G2/M transition of mitotic cell cycle // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0000086 // G2/M transition of mitotic cell cycle // not recorded /// ENSRNOT00000020098 // GO:0000819 // sister chromatid segregation // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0000819 // sister chromatid segregation // not recorded /// ENSRNOT00000020098 // GO:0001827 // inner cell mass cell fate commitment // not recorded /// ENSRNOT00000020098 // GO:0001828 // inner cell mass cellular morphogenesis // not recorded /// ENSRNOT00000020098 // GO:0006468 // protein phosphorylation // not recorded /// ENSRNOT00000020098 // GO:0007067 // mitotic nuclear division // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0009755 // hormone-mediated signaling pathway // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0009755 // hormone-mediated signaling pathway // not recorded /// ENSRNOT00000020098 // GO:0018105 // peptidyl-serine phosphorylation // not recorded /// ENSRNOT00000020098 // GO:0030216 // keratinocyte differentiation // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0030216 // keratinocyte differentiation // not recorded /// ENSRNOT00000020098 // GO:0030833 // regulation of actin filament polymerization // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0030833 // regulation of actin filament polymerization // not recorded /// ENSRNOT00000020098 // GO:0033138 // positive regulation of peptidyl-serine phosphorylation // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0033138 // positive regulation of peptidyl-serine phosphorylation // not recorded /// ENSRNOT00000020098 // GO:0034613 // cellular protein localization // not recorded /// ENSRNOT00000020098 // GO:0035329 // hippo signaling // not recorded /// ENSRNOT00000020098 // GO:0043065 // positive regulation of apoptotic process // not recorded /// ENSRNOT00000020098 // GO:0043254 // regulation of protein complex assembly // not recorded /// ENSRNOT00000020098 // GO:0045736 // negative regulation of cyclin-dependent protein serine/threonine kinase activity // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0045736 // negative regulation of cyclin-dependent protein serine/threonine kinase activity // not recorded /// ENSRNOT00000020098 // GO:0046620 // regulation of organ growth // not recorded /// ENSRNOT00000020098 // GO:0051220 // cytoplasmic sequestering of protein // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0051220 // cytoplasmic sequestering of protein // not recorded /// ENSRNOT00000020098 // GO:0090090 // negative regulation of canonical Wnt signaling pathway // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0090090 // negative regulation of canonical Wnt signaling pathway // not recorded /// ENSRNOT00000020098 // GO:0006468 // protein phosphorylation // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0034613 // cellular protein localization // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0035329 // hippo signaling // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0043254 // regulation of protein complex assembly // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0000082 // G1/S transition of mitotic cell cycle // --- /// ENSRNOT00000020098 // GO:0016310 // phosphorylation // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0018105 // peptidyl-serine phosphorylation // --- /// ENSRNOT00000020098 // GO:0035329 // hippo signaling // --- /// ENSRNOT00000020098 // GO:0043065 // positive regulation of apoptotic process // --- /// ENSRNOT00000020098 // GO:0046620 // regulation of organ growth // --- NM_001134543 // GO:0000922 // spindle pole // not recorded /// NM_001134543 // GO:0005737 // cytoplasm // inferred from electronic annotation /// NM_001134543 // GO:0000922 // spindle pole // --- /// NM_001134543 // GO:0000922 // spindle pole // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0000922 // spindle pole // not recorded /// ENSRNOT00000020098 // GO:0005737 // cytoplasm // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0000922 // spindle pole // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0000922 // spindle pole // --- NM_001134543 // GO:0000287 // magnesium ion binding // inferred from electronic annotation /// NM_001134543 // GO:0000287 // magnesium ion binding // not recorded /// NM_001134543 // GO:0004674 // protein serine/threonine kinase activity // not recorded /// NM_001134543 // GO:0005524 // ATP binding // inferred from electronic annotation /// NM_001134543 // GO:0005524 // ATP binding // not recorded /// NM_001134543 // GO:0019901 // protein kinase binding // inferred from electronic annotation /// NM_001134543 // GO:0019901 // protein kinase binding // not recorded /// NM_001134543 // GO:0000166 // nucleotide binding // inferred from electronic annotation /// NM_001134543 // GO:0004672 // protein kinase activity // inferred from electronic annotation /// NM_001134543 // GO:0004674 // protein serine/threonine kinase activity // --- /// NM_001134543 // GO:0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// NM_001134543 // GO:0016301 // kinase activity // inferred from electronic annotation /// NM_001134543 // GO:0016740 // transferase activity // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0000287 // magnesium ion binding // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0000287 // magnesium ion binding // not recorded /// ENSRNOT00000020098 // GO:0004674 // protein serine/threonine kinase activity // not recorded /// ENSRNOT00000020098 // GO:0005524 // ATP binding // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0005524 // ATP binding // not recorded /// ENSRNOT00000020098 // GO:0019901 // protein kinase binding // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0019901 // protein kinase binding // not recorded /// ENSRNOT00000020098 // GO:0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0000166 // nucleotide binding // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0004672 // protein kinase activity // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0004674 // protein serine/threonine kinase activity // --- /// ENSRNOT00000020098 // GO:0016301 // kinase activity // inferred from electronic annotation /// ENSRNOT00000020098 // GO:0016740 // transferase activity // inferred from electronic annotation --- ENSRNOT00000020098 // Pfam // IPR000719 // Protein kinase domain /// ENSRNOT00000020098 // Pfam // IPR000719 // Protein kinase domain main Coding

Total number of rows: 70580

Table truncated, full table size 186753 Kbytes.




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