NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL22557 Query DataSets for GPL22557
Status Public on Oct 14, 2016
Title Agilent-044360 mCNV1_design1
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16044360 or 2544360.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Oct 13, 2016
Last update date Oct 14, 2016
Contact name Pengfei Liu
E-mail(s) pengfeil@bcm.edu
Phone 7137985122
Organization name Baylor College of Medicine
Lab Pengfei Liu
Street address 2450 Holcombe Blvd, O270F
City Houston
State/province TX
ZIP/Postal code 77021
Country USA
 
Samples (3) GSM2342963, GSM2342964, GSM2342965
Series (2)
GSE87913 Individuals with excess numbers of germline de novo CNVs [Agilent]
GSE87915 Individuals with excess numbers of germline de novo CNVs

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBank Accession number
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION
1 532 340 HsCGHBrightCorner pos
2 532 338 DarkCorner2 pos
3 532 336 DarkCorner2 pos
4 532 334 DarkCorner2 pos
5 532 332 DarkCorner2 pos
6 532 330 DarkCorner2 pos
7 532 328 DarkCorner2 pos
8 532 326 DarkCorner2 pos
9 532 324 DarkCorner2 pos
10 532 322 DarkCorner2 pos
11 532 320 DarkCorner2 pos
12 532 318 DarkCorner2 pos
13 532 316 DarkCorner2 pos
14 532 314 DarkCorner2 pos
15 532 312 DarkCorner2 pos
16 532 310 DarkCorner2 pos
17 532 308 DarkCorner2 pos
18 532 306 DarkCorner2 pos
19 532 304 DarkCorner2 pos
20 532 302 DarkCorner2 pos

Total number of rows: 180880

Table truncated, full table size 27106 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap