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Platform GPL23211 Query DataSets for GPL23211
Status Public on Mar 23, 2017
Title IlluminaHumanOmni5Exome-4 v1 B1
Technology type oligonucleotide beads
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Illumina Inc.
Manufacture protocol see manufacturer's website
 
 
Submission date Mar 22, 2017
Last update date Mar 23, 2017
Contact name Rajini Haraksingh
E-mail(s) rharaksingh@gmail.com
Phone 2035358367
Organization name The University of the West Indies
Department Life Sciences
Street address The University of the West Indies
City St. Augustine
ZIP/Postal code -
Country Trinidad and Tobago
 
Samples (2) GSM2545694, GSM2545695
Series (2)
GSE96893 Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans [IlluminaHumanOmni5Exome]
GSE96909 Comprehensive performance comparison of high-resolution array platforms for genome-wide Copy Number Variation (CNV) analysis in humans

Data table header descriptions
ID Name
IlmnID
IlmnStrand
SNP
AddressA_ID
SEQUENCE AlleleA_ProbeSeq
AddressB_ID
SEQUENCE AlleleB_ProbeSeq
GenomeBuild
Chr
MapInfo
Ploidy
Species
Source
SourceVersion
SourceStrand
SourceSeq
TopGenomicSeq
BeadSetID
RefStrand
Exp_Clusters

Data table
ID IlmnID IlmnStrand SNP AddressA_ID SEQUENCE AddressB_ID SEQUENCE GenomeBuild Chr MapInfo Ploidy Species Source SourceVersion SourceStrand SourceSeq TopGenomicSeq BeadSetID RefStrand Exp_Clusters
200003 200003-0_B_R_1852966091 BOT [T/C] 0011602827 GCCAGCTTCGTTGTCTTCCTCGTGGCCGAGAAGTCCACCAAGGCCAAGCA 37 9 139906359 diploid Homo sapiens ILLUMINA 0 TOP GTCCCACACGTAGTTCGCCAGCCAGTAGATGATGGGGTTGCAGCCGCTGACAAACTGCAG[A/G]TGCTTGGCCTTGGTGGACTTCTCGGCCACGAGGAAGACAACGAAGCTGGCCGGCACGAAG GTCCCACACGTAGTTCGCCAGCCAGTAGATGATGGGGTTGCAGCCGCTGACAAACTGCAG[A/G]TGCTTGGCCTTGGTGGACTTCTCGGCCACGAGGAAGACAACGAAGCTGGCCGGCACGAAG 550 - 3
200050 200050-0_T_R_1853021092 TOP [C/G] 0098776159 TGTATTCCTGGGCATCAGTTATCCTTATCTGTCATTGACAAATCAGGAAC 0019692285 TGTATTCCTGGGCATCAGTTATCCTTATCTGTCATTGACAAATCAGGAAG 37 2 220089685 diploid Homo sapiens ILLUMINA 0 BOT GCCTCGACCCCTTTGCCCTATATTAGAAGTGAGATTCAGGGGTTGTGAGCTTAAGAGACA[C/G]TTCCTGATTTGTCAATGACAGATAAGGATAACTGATGCCCAGGAATACACCCACACCTCC GGAGGTGTGGGTGTATTCCTGGGCATCAGTTATCCTTATCTGTCATTGACAAATCAGGAA[C/G]TGTCTCTTAAGCTCACAACCCCTGAATCTCACTTCTAATATAGGGCAAAGGGGTCGAGGC 532 - 3
200070 200070-0_B_F_1853043006 BOT [G/C] 0051650151 CAGGTTGTGTCCCAGGCTAGATATGAAAACACAAACAAGTCTCTTAACTG 0007692323 CAGGTTGTGTCCCAGGCTAGATATGAAAACACAAACAAGTCTCTTAACTC 37 16 16266598 diploid Homo sapiens ILLUMINA 0 BOT GATTTGAGTCCCAGGTTGTGTCCCAGGCTAGATATGAAAACACAAACAAGTCTCTTAACT[C/G]TTTAAGACTTCAGTTTCTTGGCTGGGCACAGTGGCTCACACCTGTAACCCCAGCACTTTG CAAAGTGCTGGGGTTACAGGTGTGAGCCACTGTGCCCAGCCAAGAAACTGAAGTCTTAAA[C/G]AGTTAAGAGACTTGTTTGTGTTTTCATATCTAGCCTGGGACACAACCTGGGACTCAAATC 530 + 3
200078 200078-0_T_R_1853021093 TOP [C/G] 0068743162 GACCAGGCAGGAAGTAGGGAGGAAGCCACAGGTCCTGGTGTGGGAGATGC 0061783172 GACCAGGCAGGAAGTAGGGAGGAAGCCACAGGTCCTGGTGTGGGAGATGG 37 16 16286614 diploid Homo sapiens ILLUMINA 0 BOT CAGCTCACAGACGACAAGAACAAAGCCAGACCCGTGGGCTCGCACTCAGCTCTCCCCTCC[C/G]CATCTCCCACACCAGGACCTGTGGCTTCCTCCCTACTTCCTGCCTGGTCCGTCCCTTTCC GGAAAGGGACGGACCAGGCAGGAAGTAGGGAGGAAGCCACAGGTCCTGGTGTGGGAGATG[C/G]GGAGGGGAGAGCTGAGTGCGAGCCCACGGGTCTGGCTTTGTTCTTGTCGTCTGTGAGCTG 532 - 3
200087 200087-0_B_F_1852966095 BOT [T/G] 0085762343 GCACCCTTCGTGGAGGGTGGAGGAGTTGAGATTCCAGGTTGTGAGCCCAG 37 16 16246164 diploid Homo sapiens ILLUMINA 0 BOT GCATGGAGTAGCACCCTTCGTGGAGGGTGGAGGAGTTGAGATTCCAGGTTGTGAGCCCAG[T/G]GAGCCCCTGACCCAGGTGGGAACTGACCCCTGGGGCCCCAGCATGGCTGTCTTGCACAGT ACTGTGCAAGACAGCCATGCTGGGGCCCCAGGGGTCAGTTCCCACCTGGGTCAGGGGCTC[A/C]CTGGGCTCACAACCTGGAATCTCAACTCCTCCACCCTCCACGAAGGGTGCTACTCCATGC 532 + 3
200199 200199-0_B_R_1852966097 BOT [G/C] 0096743100 AGGGCTCCTGAGGTATGTCTCCATGAAAATGATCATATGGAGAAATGACG 0042779847 AGGGCTCCTGAGGTATGTCTCCATGAAAATGATCATATGGAGAAATGACC 37 22 42517989 diploid Homo sapiens ILLUMINA 0 TOP AATTCATCCAAATTTTCTGCCAAAAATAGAAATCTCTTTGCAGTACATTTAGACAGATCA[C/G]GTCATTTCTCCATATGATCATTTTCATGGAGACATACCTCAGGAGCCCTCCATCTCCCTG AATTCATCCAAATTTTCTGCCAAAAATAGAAATCTCTTTGCAGTACATTTAGACAGATCA[C/G]GTCATTTCTCCATATGATCATTTTCATGGAGACATACCTCAGGAGCCCTCCATCTCCCTG 550 - 3
200262 200262-0_B_F_1853043007 BOT [T/C] 0078788185 AAAGCCTTCAGTTAGCATACCAAGGGAAGCAGGAACAAGAGGTGAAGACA 37 1 20994217 diploid Homo sapiens ILLUMINA 0 BOT CCATGTGGAGAAAGCCTTCAGTTAGCATACCAAGGGAAGCAGGAACAAGAGGTGAAGACA[T/C]Aggccaggagcagtggctcacgcctgtaatcccagcactttgggaggccaaggcaggcgg ccgcctgccttggcctcccaaagtgctgggattacaggcgtgagccactgctcctggccT[A/G]TGTCTTCACCTCTTGTTCCTGCTTCCCTTGGTATGCTAACTGAAGGCTTTCTCCACATGG 530 + 3
200610-1 200610-1-0_B_R_1867864656 BOT [T/C] 0089623573 TTTTTAATGCAGGTTTGGTAGTTTAGGACCTGTGGGTTTGTTAGGTACTG 37 MT 2755 diploid Homo sapiens BGI 0 TOP GGCATAACACAGCAAGACGAGAAGACCCTATGGAGCTTTAATTTATTAATGCAA[A/G]CAGTACCTAACAAACCCACAGGTCCTAAACTACCAAACCTGCATTAAAAATTTCGGTTGGGGCGACCTCGGAGCAGAACCCAACCTCCGAGCAGT GGCATAACACAGCAAGACGAGAAGACCCTATGGAGCTTTAATTTATTAATGCAA[A/G]CAGTACCTAACAAACCCACAGGTCCTAAACTACCAAACCTGCATTAAAAATTTCGGTTGGGGCGACCTCGGAGCAGAACCCAACCTCCGAGCAGT 442 - 2
200610-10 200610-10-0_B_R_1867864658 BOT [T/C] 0036666528 TCTACGTCTATTCCTACTGTAAATATATGGTGTGCTCACACGATAAACCC 37 0 0 diploid Homo sapiens BGI 0 TOP TACTACTCCGGAAAAAAAGAACCATTTGGATACATAGGTATGGTCTGAGCTATGATATCAATTGGCTTCCT[A/G]GGGTTTATCGTGTGAGCACACCATATATTTACAGTAGGAATAGACGTAGACACACGAGCATATTTCACCTCC TACTACTCCGGAAAAAAAGAACCATTTGGATACATAGGTATGGTCTGAGCTATGATATCAATTGGCTTCCT[A/G]GGGTTTATCGTGTGAGCACACCATATATTTACAGTAGGAATAGACGTAGACACACGAGCATATTTCACCTCC 442 + 3
200610-100 200610-100-0_B_R_1867864660 BOT [T/C] 0001641130 TCTGTCCCAATGTATGGGATGGCGGATAGTAAGTTTGTAATTACTGTGGC 37 MT 15172 diploid Homo sapiens BGI 0 TOP CTCCTGCTTGCAACTATAGCAACAGCCTTCATAGGCTATGTCCTCCCGTGAGGCCAAATATCATTCTGAGG[A/G]GCCACAGTAATTACAAACTTACTATCCGCCATCCCATACATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTAC CTCCTGCTTGCAACTATAGCAACAGCCTTCATAGGCTATGTCCTCCCGTGAGGCCAAATATCATTCTGAGG[A/G]GCCACAGTAATTACAAACTTACTATCCGCCATCCCATACATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTAC 450 - 2
200610-102 200610-102-0_T_R_1867864662 TOP [A/G] 0096609523 TGAACGTAGGTGCGATAAATAATAGGATGAGGCAGGAATCAAAGACAGAT 37 MT 125 diploid Homo sapiens BGI 0 BOT TTGGTATTTTCGTCTGGGGGGTATGCACGCGATAGCATTGCGAGACGCTGGAGCCGGAGCACCCTATGTCGCAG[T/C]ATCTGTCTTTGATTCCTGCCTCATCCTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATACTTACTA TAGTAAGTATGTTCGCCTGTAATATTGAACGTAGGTGCGATAAATAATAGGATGAGGCAGGAATCAAAGACAGAT[A/G]CTGCGACATAGGGTGCTCCGGCTCCAGCGTCTCGCAATGCTATCGCGTGCATACCCCCCAGACGAAAATACCAA 450 - 2
200610-104 200610-104-0_B_F_1867864664 BOT [T/C] 0095685332 CGCACCTACGTTCAATATTACAGGCGAACATACTTACTAAAGTGTGTTAA 37 MT 212 diploid Homo sapiens BGI 0 BOT TTATTTATCGCACCTACGTTCAATATTACAGGCGAACATACTTACTAAAGTGTGTTAA[T/C]TAATTAATGCTTGTAGGACATAATAATAACAATTGAATGTCTGCACAGCCACTTTCCACACAGACATCATAACAA TTGTTATGATGTCTGTGTGGAAAGTGGCTGTGCAGACATTCAATTGTTATTATTATGTCCTACAAGCATTAATTA[A/G]TTAACACACTTTAGTAAGTATGTTCGCCTGTAATATTGAACGTAGGTGCGATAAATAA 485 + 2
200610-105 200610-105-0_T_R_1867864667 TOP [A/G] 0034805145 TGTTATGATGTCTGTGTGGAAAGTGGCTGTGCAGACATTCAATTGTTATT 37 MT 236 diploid Homo sapiens BGI 0 BOT CTATTATTTATCGCACCTACGTTCAATATTACAGGCGAACATACTTACTAAAGTGTGTTAATTAATTAATGCTTGTAGGACATAA[T/C]AATAACAATTGAATGTCTGCACAGCCACTTTCCACACAGACATCATAACAAAAAATTTCCACCA TGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGTGGCTGTGCAGACATTCAATTGTTATT[A/G]TTATGTCCTACAAGCATTAATTAATTAACACACTTTAGTAAGTATGTTCGCCTGTAATATTGAACGTAGGTGCGATAAATAATAG 442 - 2
200610-106 200610-106-0_T_R_1867864669 TOP [A/G] 0062638855 GGAAATTTTTTGTTATGATGTCTGTGTGGAAAGTGGCTGTGCAGACATTC 37 MT 246 diploid Homo sapiens BGI 0 BOT AATATTACAGGCGAACATACTTACTAAAGTGTGTTAATTAATTAATGCTTGTAGGACATAATAATAACAAT[T/C]GAATGTCTGCACAGCCACTTTCCACACAGACATCATAACAAAAAATTTCCACCAAACCCCCCCTCCCCCGCTTCTGG CCAGAAGCGGGGGAGGGGGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGTGGCTGTGCAGACATTC[A/G]ATTGTTATTATTATGTCCTACAAGCATTAATTAATTAACACACTTTAGTAAGTATGTTCGCCTGTAATATT 485 - 2
200610-107 200610-107-0_B_F_1867864670 BOT [T/C] 0029623597 ACCCCCCAACTAACACATTATTTTCCCCTCCCACTCCCATACTACTAATC 37 MT 482 diploid Homo sapiens BGI 0 BOT TATCTTTTGGCGGTATGCACTTTTAACAGTCACCCCCCAACTAACACATTATTTTCCCCTCCCACTCCCATACTACTAATC[T/C]CATCAATACAACCCCCGCCCATCCTACCCAGCACACACACACCGCTGCTAACCCCATACCCCGAACCA TGGTTCGGGGTATGGGGTTAGCAGCGGTGTGTGTGTGCTGGGTAGGATGGGCGGGGGTTGTATTGATG[A/G]GATTAGTAGTATGGGAGTGGGAGGGGAAAATAATGTGTTAGTTGGGGGGTGACTGTTAAAAGTGCATACCGCCAAAAGATA 442 + 2
200610-108 200610-108-0_T_R_1867864673 TOP [A/G] 0087799930 AGCTGTGGCTCGTAGTGTTCTGGCGAGCAGTTTTGTTGATTTAACTGTTG 37 0 0 diploid Homo sapiens BGI 0 BOT ACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACC[T/C]CAACAGTTAAATCAACAAAACTGCTCGCCAGAACACTACGAGCCACAGCTTAAAACTCAAAGGACCTGGCGGTG CACCGCCAGGTCCTTTGAGTTTTAAGCTGTGGCTCGTAGTGTTCTGGCGAGCAGTTTTGTTGATTTAACTGTTG[A/G]GGTTTAGGGCTAAGCATAGTGGGGTATCTAATCCCAGTTTGGGTCTTAGCTATTGT 442 + 3
200610-109 200610-109-0_T_R_1867864675 TOP [A/G] 0044745570 CTTTGAGTTTTAAGCTGTGGCTCGTAGTGTTCTGGCGAGCAGTTTTGTTG 37 0 0 diploid Homo sapiens BGI 0 BOT ACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACCTCAACAGTTAAA[T/C]CAACAAAACTGCTCGCCAGAACACTACGAGCCACAGCTTAAAACTCAAAGGACCTGGCGGTGCTTCATATCCCTCTAGAGG CCTCTAGAGGGATATGAAGCACCGCCAGGTCCTTTGAGTTTTAAGCTGTGGCTCGTAGTGTTCTGGCGAGCAGTTTTGTTG[A/G]TTTAACTGTTGAGGTTTAGGGCTAAGCATAGTGGGGTATCTAATCCCAGTTTGGGTCTTAGCTATTGT 442 + 3
200610-110 200610-110-0_T_R_1867864679 TOP [A/G] 0086804129 GTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTT 37 MT 3027 diploid Homo sapiens BGI 0 BOT ATTCTAGAGTCCATATCAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCGATGGTGCAGCCGCTAT[T/C]AAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTCGGTTTCT AGAAACCGACCTGGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACAAACGAACCTTT[A/G]ATAGCGGCTGCACCATCGGGATGTCCTGATCCAACATCGAGGTCGTAAACCCTATTGTTGATATGGACTCTAGAAT 442 - 2
200610-111 200610-111-0_B_F_1867864680 BOT [T/C] 0066804264 CTAATCGCAATGGCATTCCTAATGCTTACCGAACGAAAAATTCTAGGCTA 37 MT 3396 diploid Homo sapiens BGI 0 BOT CTCATTGTACCCATTCTAATCGCAATGGCATTCCTAATGCTTACCGAACGAAAAATTCTAGGCTA[T/C]ATACAACTACGCAAAGGCCCCAACGTTGTAGGCCCCTACGGGCTACTACAACCC GGGTTGTAGTAGCCCGTAGGGGCCTACAACGTTGGGGCCTTTGCGTAGTTGTAT[A/G]TAGCCTAGAATTTTTCGTTCGGTAAGCATTAGGAATGCCATTGCGATTAGAATGGGTACAATGAG 442 + 2
200610-112 200610-112-0_T_R_1867864683 TOP [A/G] 0004738195 TCAGGGCGTAGTTTGAGTTTGATGCTCACCCTGATCAGAGGATTGAGTAA 37 MT 3644 diploid Homo sapiens BGI 0 BOT CTCTTCTACTATGAACCCCCCTCCCCATACCCAACCCCCTGGTCAACCTCAACCTAGGCCTCCTATTTATTCTAGCCACCTCTAGCCTAGCCG[T/C]TTACTCAATCCTCTGATCAGGGTGAGCATCAAACTCAAACTACGCCCTGATCGGCG CGCCGATCAGGGCGTAGTTTGAGTTTGATGCTCACCCTGATCAGAGGATTGAGTAA[A/G]CGGCTAGGCTAGAGGTGGCTAGAATAAATAGGAGGCCTAGGTTGAGGTTGACCAGGGGGTTGGGTATGGGGAGGGGGGTTCATAGTAGAAGAG 442 - 2

Total number of rows: 4511703

Table truncated, full table size 1891494 Kbytes.




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GPL23211_HumanOmni5Exome-4v1_B1.csv.gz 465.1 Mb (ftp)(http) CSV

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