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Platform GPL23228 Query DataSets for GPL23228
Status Public on Apr 23, 2017
Title Agilent-048820 FU-Steppuhn Solanum dulcamara 60K v1.0
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Solanum dulcamara
Manufacturer Agilent
Manufacture protocol For manufacturing details, see Agilent website (http://www.agilent.com).
 
 
Submission date Mar 26, 2017
Last update date Mar 26, 2017
Contact name Tobias Lortzing
E-mail(s) tobias.lortzing@fu-berlin.de
Organization name Freie Universität Berlin
Department Biology
Lab Molecular Ecology
Street address Haderslebener Str. 9
City Berlin
State/province Berlin
ZIP/Postal code 12163
Country Germany
 
Samples (86) GSM2550491, GSM2550492, GSM2550493, GSM2550494, GSM2550495, GSM2550496 
Series (7)
GSE97043 Comparison of Solanum dulcamara transcriptome after real and simulated herbivory
GSE100221 Solanum dulcamara's response to insect eggs comprises ovicidal hydrogen peroxide production
GSE122893 Interactive responses of Solanum dulcamara to drought and insect feeding are herbivore species specific

Data table header descriptions
ID
ControlType Type of oligo (1/-1= structural/technical control; 0= targeting Solanum dulcamara transcript)
SEQUENCE Oligonucleotide sequence
accessions Accessions matching to the oligo probe in the Solanum dulcamara transcriptome according to D’Agostino N, Golas T, van de Geest H et al. (2013) Genomic analysis of the native European Solanum species, S. dulcamara. BMC Genomics, 14, 356
target_contig If multiple accessions might match, the accession with the longest sequence was assigned as target contig for averaging and GO-term annotation
GOID GO-terms annotated to target contig according to Nguyen D, D’Agostino N, Tytgat TOG et al. (2016) Drought and flooding have distinct effects on herbivore-induced responses and resistance in Solanum dulcamara. Plant, Cell & Environment, 39, 1485-1499
ITAG_2.3_ID Solanum lycopersicum ITAG 2.3 ID of the target contig according to Nguyen D, D’Agostino N, Tytgat TOG et al. (2016) Drought and flooding have distinct effects on herbivore-induced responses and resistance in Solanum dulcamara. Plant, Cell & Environment, 39, 1485-1499
KEGG KEGG identifiers of the target contig according to Nguyen D, D’Agostino N, Tytgat TOG et al. (2016) Drought and flooding have distinct effects on herbivore-induced responses and resistance in Solanum dulcamara. Plant, Cell & Environment, 39, 1485-1499.
EC_number EC number of the target contig according to Nguyen D, D’Agostino N, Tytgat TOG et al. (2016) Drought and flooding have distinct effects on herbivore-induced responses and resistance in Solanum dulcamara. Plant, Cell & Environment, 39, 1485-1499.
Description Gene description
SPOT_ID

Data table
ID ControlType SEQUENCE accessions target_contig GOID ITAG_2.3_ID KEGG EC_number Description SPOT_ID
1 1 null null null null null null null null
2 1 null null null null null null null null
3 1 null null null null null null null null
4 0 TGCTACTTTCAATTTGGTTTAGCGCAAACTTGAATCCCCATCTATTTGCCTTCTCAATTA hom|comp14763_c0_seq1 comp14763_c0_seq1 Fwd GO:0004672 GO:0051301 GO:0001708 GO:0006811 GO:0048229 GO:0006952 GO:0006796 GO:0016049 GO:0009886 GO:0048507 GO:0010016 GO:0007165 GO:0010033 GO:0040008 GO:0048610 GO:0033554 GO:0006464 GO:0042545 GO:0070727 GO:0009664 GO:0009887 GO:0009617 GO:0010468 GO:0009793 GO:1901362 GO:0044710 GO:0031326 GO:0006996 GO:0048653 GO:0019438 GO:0022402 GO:0090304 GO:0009845 GO:2000241 GO:0043231 GO:0008544 GO:0048580 GO:0009605 GO:0018130 GO:0010431 GO:0005886 GO:0048518 GO:0080090 GO:0048646 GO:0044723 GO:0048366 GO:0034645 GO:0097159 GO:0048589 GO:0007389 GO:0044444 Solyc03g005960.2.1 NA NA Receptor_like_kinase,_RLK
5 0 TTCCTATTGTTGTTGCTCATTTGAATGTTGGAGTGTTGTGCTAGTCTCCTCTCTCATTTA hom|comp22823_c0_seq1|hom|comp22823_c0_seq2 comp22823_c0_seq1 Fwd NA NA NA NA NA
6 0 GAGGTGAAAAAGTTCATGAATTGGAGTGGATTATAGCATTAGGTGTTTCAGGTCAATATT hom|comp21354_c0_seq1 comp21354_c0_seq1 Rev GO:0048767 GO:0006006 GO:0005507 GO:0005774 GO:0048653 GO:0006811 GO:0005829 GO:0048316 GO:0009506 GO:0009941 GO:0005618 GO:0006865 GO:0005471 GO:0009056 GO:0005515 GO:0044267 GO:0005347 GO:0005730 GO:0022621 GO:0005789 GO:0015867 GO:0005744 GO:0006626 GO:0009612 GO:0048489 GO:0071817 GO:0007629 GO:0015853 GO:0001508 GO:0051560 GO:0042645 GO:0008340 GO:0044281 GO:0042995 GO:0006112 GO:0005887 GO:0005811 GO:0046732 GO:0046716 GO:0050796 GO:0040011 GO:0070050 GO:0051124 GO:0015207 GO:0034599 GO:0019058 GO:0051480 Solyc08g063010.2.1 NA NA ADP,ATP_carrier_protein_1,_mitochondrial_(AHRD_V1_*-**_ADT1_WHEAT)
7 0 AATGTTGATAATCAACAATCGGTTCCCCGGAGGTCCCATCAGAATTTCAGGGGTAATCGT hom|comp3978_c0_seq1 comp3978_c0_seq1 Rev GO:0005829 Solyc01g010440.2.1 NA NA Unknown_Protein_(AHRD_V1)
8 0 ATCGGAGTGCCACATTTGAAACAAGGGGATATTCCACCACAAGGAGGGAGGCCAGGGTGG hom|comp6909_c0_seq2 comp6909_c0_seq2 Rev GO:0051499 GO:0009644 GO:0005829 GO:0042542 GO:0009636 Solyc06g069390.2.1 NA NA D-tyrosyl-tRNA(Tyr)_deacylase_(AHRD_V1_****_DTDA_ARCFU)
9 0 TAATGGTGTAGAAATAGCATCTTTTTCTTTTGGTAGCTTTGGACCCTACTGGTAGTTGAG hom|comp15828_c0_seq1 comp15828_c0_seq1 Rev GO:0005515 GO:0008270 GO:0044424 GO:0006974 Solyc09g008330.2.1 NA NA E3_ubiquitin-protein_ligase_RFWD3_(AHRD_V1_*---_RFWD3_HUMAN)
10 0 CCAAATTGATGAGACTGAGTAGGCCAATTAAGGAAGAGAGAGACAAAATGAACGGTGCCG hom|comp27380_c0_seq1 comp27380_c0_seq1 Fwd NA NA NA NA NA
11 0 TGGCATTAAGATTGGTGATCACCTGTACTGTGGCTCTGTTAAGTCTCGGTACATACTTCG hom|comp13069_c0_seq1 comp13069_c0_seq1 Rev GO:0009695 GO:0009965 GO:0010155 GO:0005783 GO:0032989 GO:0009753 GO:0009620 GO:0010629 GO:0045229 GO:0009821 GO:0005773 GO:0030154 GO:0048523 GO:0046777 GO:0045893 GO:0009902 GO:0016844 GO:0009611 GO:0016020 GO:0016114 GO:0042432 Solyc02g082900.2.1 map00901:_Indole_alkaloid_biosynthesis ec:4.3.3.2 Strictosidine_synthase_family_protein_(AHRD_V1_**--_D7LTU8_ARALY)
12 0 GTCGGATCTCTCAATATTAGTATGTAAGTACTGCAATCACTAGCTAATTATCTTGGTTGT hom|comp10316_c0_seq1 comp10316_c0_seq1 Fwd GO:0003700 GO:0009695 GO:0009863 GO:0043425 GO:0009738 GO:0010363 GO:0010200 GO:0043619 GO:0043069 GO:0001708 GO:0016043 GO:0009867 GO:0009620 GO:0006612 GO:0009963 GO:0003677 GO:0042538 GO:2000068 GO:0045893 GO:0006464 GO:0009269 GO:0009718 GO:0009409 GO:0005509 GO:0009913 GO:0048658 GO:0051090 GO:0009611 GO:0005667 GO:0045449 GO:0046983 GO:0010440 GO:0048646 Solyc01g096370.2.1 NA NA BHLH_transcription_factor_(AHRD_V1_*-**_Q401N4_9LILI)
13 0 CATACTATTAGGAGCTCTTTTCGCCTCGACTTCGTAGTAATTGAGAGAGATTGGCTTTAC hom|comp13869_c0_seq1 comp13869_c0_seq1 Rev GO:0046556 GO:0000394 GO:0080176 GO:0009044 GO:0048046 GO:0009505 GO:0009507 GO:0009086 GO:0005829 GO:0046686 GO:0009506 GO:0010411 GO:0045493 GO:0009117 GO:0005982 GO:0005985 GO:0004558 GO:0006012 GO:0017177 GO:0003007 GO:0006941 GO:0009888 GO:0016020 GO:0065008 GO:0007517 GO:0005764 GO:0005977 GO:0060047 GO:0009251 GO:0016043 GO:0044247 Solyc02g069670.2.1 map00520:_Amino_sugar_and_nucleotide_sugar_metabolism;_map00052:_Galactose_metabolism;_map00500:_Starch_and_sucrose_metabolism c(\ec:3.2.1.20\, \ec:3.2.1.37\, \ec:3.2.1.55\) Alpha-glucosidase_1_(AHRD_V1_****_O22444_ARATH)
14 0 AAGATCACAGCCAACAACAGCAGTTCCTCAGACAAGCCAAAAGGTTGAGAAGATACAACC hom|comp10683_c0_seq1 comp10683_c0_seq1 Rev NA Solyc03g095250.2.1 NA NA cDNA_clone_001-032-H02_full_insert_sequence_(Fragment)_(AHRD_V1_**--_B7E5B1_ORYSJ)
15 0 GATGCCTTTCATTGCTGTTTACCGACTAGAATGAACTAAAGACTTATCCTTTTTCTTTCT hom|comp8701_c0_seq1 comp8701_c0_seq1 Rev GO:0045892 GO:0048364 GO:0006996 GO:0005783 GO:0005774 GO:0010584 GO:0009821 GO:0006810 GO:0009755 GO:0016844 GO:0005488 GO:0016114 GO:0042432 GO:0005886 Solyc06g073910.2.1 map00901:_Indole_alkaloid_biosynthesis ec:4.3.3.2 Strictosidine_synthase_(AHRD_V1_***-_B6TK54_MAIZE)
16 0 GGGAAAATTGTTATTTGGGACAGTTGCATCTATTGCTGCTAATAATGGATTTTCATCAGT hom|comp4593_c0_seq1 comp4593_c0_seq1 Rev GO:0008080 GO:0042967 GO:0005737 GO:0050366 GO:0044459 GO:0008272 GO:0015116 GO:0009987 Solyc08g006730.1.1 NA NA N-acetyltransferase_(AHRD_V1_***-_B6SUK9_MAIZE)
17 0 TCTTTCATTTTTCTGAATGGCATCCACTTGAATAGCAAAATCGACCGGGGCTTGAAGCCC hom|comp13169_c0_seq1 comp13169_c0_seq1 Fwd GO:0004713 GO:0005524 GO:0004674 GO:0009069 GO:0046777 GO:0005515 GO:0005634 GO:0009615 Solyc11g069300.1.1 NA NA Serine/threonine-protein_kinase-like_protein_(AHRD_V1_*-*-_Q9M1T5_ARATH)
18 0 TGAAGCAATATAACACATGGAAGTAGCATTATCACAAAGAAGGTATGCGCCACAAAAGTA hom|comp22607_c0_seq1 comp22607_c0_seq1 Rev NA NA NA NA NA
19 0 GAAGGCGGAGAATGTGAGCTGATTTTCTTTAGAAGATTGGACGATGAATTCAACAAGGTG hom|comp11793_c0_seq6 comp11793_c0_seq6 Rev GO:0005886 GO:0009960 GO:0010468 GO:0005829 GO:0045793 GO:0010017 GO:0080113 GO:0005634 Solyc02g088220.2.1 NA NA Xenotropic_and_polytropic_retrovirus_receptor_(AHRD_V1_**-*_B2GU54_XENTR)
20 0 TCTTTAATTCCACAGCCTCCTTATGGTGTCCCTGGCTTCTGAAATGTGTAGGGTATGCAA hom|comp24182_c0_seq1 comp24182_c0_seq1 Rev NA NA NA NA NA

Total number of rows: 62970

Table truncated, full table size 20837 Kbytes.




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