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GEO help: Mouse over screen elements for information. |
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Status |
Public on Nov 15, 2017 |
Title |
NextSeq 550 (Arabidopsis thaliana) |
Technology type |
high-throughput sequencing |
Distribution |
virtual |
Organism |
Arabidopsis thaliana |
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Submission date |
Nov 15, 2017 |
Last update date |
Nov 15, 2017 |
Contact name |
GEO |
Country |
USA |
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Samples (993)
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GSM2857895, GSM2857896, GSM2857897, GSM2857898, GSM2857899, GSM2857900
GSM2857901, GSM2857902, GSM2857903, GSM2857904, GSM2857905, GSM2857906, GSM2857907, GSM2857908, GSM2857909, GSM2857910, GSM2857911, GSM2857912, GSM2857913, GSM2857914, GSM2857915, GSM2857916, GSM2857917, GSM2857918, GSM2857919, GSM2857920, GSM2857921, GSM2857922, GSM2857923, GSM2857924, GSM2857925, GSM2857926, GSM2857927, GSM2857928, GSM2857929, GSM2857930, GSM2857931, GSM2857932, GSM2994861, GSM2994862, GSM2994863, GSM2994864, GSM2994865, GSM2994866, GSM2994867, GSM2994868, GSM2994869, GSM2994870, GSM2994871, GSM2995054, GSM2995055, GSM2995056, GSM2995057, GSM2995058, GSM2995059, GSM2995060, GSM2995061, GSM2995062, GSM2995063, GSM2995064, GSM2995065, GSM2995066, GSM3511858, GSM3511859, GSM3511860, GSM3511861, GSM3511862, GSM3511863, GSM3511864, GSM3752606, GSM3752607, GSM3752608, GSM3752609, GSM3752610, GSM3752611, GSM3752612, GSM3752613, GSM4300539, GSM4300540, GSM4300541, GSM4300542, GSM4300543, GSM4300544, GSM4300545, GSM4300546, GSM4300547, GSM4411235, GSM4411236, GSM4411237, GSM4411238, GSM4411239, GSM4411240, GSM4411241, GSM4411242, GSM4411243, GSM4411250, GSM4411251, GSM4411252, GSM4411253, GSM4411254, GSM4411255, GSM4411256, GSM4411257, GSM4411258, GSM4411259, GSM4411260, GSM4411261, GSM4411262, GSM4411263, GSM4411264, GSM4411265, GSM4411266, GSM4411267, GSM4411268, GSM4411269, GSM4411270, GSM4411271, GSM4411272, GSM4411273, GSM4411274, GSM4411275, GSM4411276, GSM4411277, GSM4411278, GSM4411279, GSM4411280, GSM4411281, GSM4411282, GSM4411283, GSM4411284, GSM4411285, GSM4630767, GSM4630783, GSM5044231, GSM5044232, GSM5044233, GSM5044234, GSM5044236, GSM5044237, GSM5044239, GSM5044241, GSM5044243, GSM5044244, GSM5044245, GSM5044246, GSM5044247, GSM5044248, GSM5044249, GSM5044251, GSM5044252, GSM5044253, GSM5044254, GSM5044255, GSM5081664, GSM5081665, GSM5081666, GSM5081667, GSM5081668, GSM5081669, GSM5081670, GSM5081671, GSM5081952, GSM5081953, GSM5081954, GSM5081955, GSM5081956, GSM5081957, GSM5081958, GSM5081959, GSM5081960, GSM5195641, GSM5195642, GSM5195643, GSM5195644, GSM5195645, GSM5195646, GSM5195647, GSM5195648, GSM5195649, GSM5195650, GSM5195651, GSM5195652, GSM5195653, GSM5195654, GSM5195655, GSM5195656, GSM5195657, GSM5195658, GSM5195659, GSM5195660, GSM5195661, GSM5195662, GSM5195663, GSM5195664, GSM5195665, GSM5195666, GSM5195667, GSM5195668, GSM5195669, GSM5195670, GSM5195671, GSM5195672, GSM5195673, GSM5195674, GSM5195675, GSM5195676, GSM5456534, GSM5456535, GSM5456536, GSM5456537, GSM5456538, GSM5572939, GSM5572940, GSM5572941, GSM5572942, GSM5572943, GSM5572944, GSM5572945, GSM5572946, GSM5572947, GSM5572948, GSM5572949, GSM5572950, GSM5572951, GSM5572952, GSM5572953, GSM5572954, GSM5572955, GSM5572956, GSM5584789, GSM5584790, GSM5584791, GSM5584792, GSM5584793, GSM5584794, GSM5584795, GSM5584796, GSM5594215, GSM5594216, GSM5594217, GSM5594218, GSM5594219, GSM5594220, GSM5594221, GSM5594222, GSM5594223, GSM5594224, GSM5594225, GSM5594226, GSM5594227, GSM5594228, GSM5594229, GSM5594230, GSM5594231, GSM5594232, GSM5594233, GSM5594234, GSM5594235, GSM5594236, GSM5594237, GSM5594238, GSM5594239, GSM5594240, GSM5594241, GSM5594242, GSM5594243, GSM5594244, GSM5594245, GSM5594246, GSM5594247, GSM5594248, GSM5594249, GSM5594250, GSM5594251, GSM5594252, GSM5594253, GSM5594254, GSM5594255, GSM5594256, GSM5594257, GSM5594258, GSM5594259, GSM5594260, GSM5594261, GSM5594262, GSM5594263, GSM5594264, GSM5606884, GSM5606885, GSM5606886, GSM5606887, GSM5606888, GSM5606889, GSM5753034, GSM5753035, GSM5753036, GSM5753037, GSM5753038, GSM5753039, GSM5753040, GSM5753041, GSM5753042, GSM5753043, GSM5753044, GSM5753045, GSM5753046, GSM5753047, GSM5753048, GSM5753049, GSM5753050, GSM5753051, GSM5753052, GSM5753053, GSM5753054, GSM5753055, GSM5753056, GSM5753057, GSM5753114, GSM5753115, GSM5753116, GSM5753117, GSM5753118, GSM5753119, GSM5753120, GSM5753121, GSM5753122, GSM5753123, GSM5753124, GSM5753125, GSM5753126, GSM5753127, GSM5753128, GSM5753129, GSM5753130, GSM5753131, GSM5753132, GSM5753133, GSM5753134, GSM5753135, GSM5753136, GSM5753137, GSM5753138, GSM5753139, GSM5753140, GSM5753185, GSM5753186, GSM5753187, GSM5753188, GSM5753189, GSM5753190, GSM5753191, GSM5753192, GSM5753193, GSM5753194, GSM5753195, GSM5753196, GSM5753197, GSM5753198, GSM5753199, GSM5753200, GSM5753201, GSM5753202, GSM5753203, GSM5753204, GSM5753205, GSM5753206, GSM5753207, GSM5753208, GSM5753209, GSM5753210, GSM5753211, GSM5753212, GSM5753213, GSM5753214, GSM5753215, GSM5753216, GSM5753217, GSM5753218, GSM5753219, GSM5753220, GSM5753221, GSM5753222, GSM5753223, GSM5753224, GSM5753225, GSM5753226, GSM5753227, GSM5753228, GSM5753229, GSM5753230, GSM5753231, GSM5753232, GSM5753233, GSM5753234, GSM5753235, GSM5753236, GSM5753237, GSM5753238, GSM5753239, GSM5753240, GSM5753241, GSM5753242, GSM5753243, GSM5753244, GSM5753245, GSM5753246, GSM5753247, GSM5753248, GSM5753249, GSM5753250, GSM5753251, GSM5753252, GSM5753253, GSM5753254, GSM5753255, GSM5753256, GSM5753257, GSM5753258, GSM5753259, GSM5753260, GSM5753261, GSM5753262, GSM5753263, GSM5753264, GSM5753265, GSM5753266, GSM5753267, GSM5753268, GSM5753269, GSM5753270, GSM5753271, GSM5753272, GSM5753273, GSM5753274, GSM5753275, GSM5753276, GSM5753277, GSM5753278, GSM5753279, GSM5753280, GSM5753281, GSM5753282, GSM5753283, GSM5753284, GSM5753285, GSM5753286, GSM5753287, GSM5753288, GSM5753289, GSM5753290, GSM5753291, GSM5753292, GSM5753293, GSM5753294, GSM5753295, GSM5753296, GSM5753297, GSM5753298, GSM5753299, GSM5753300, GSM5753301, GSM5753302, GSM5753303, GSM5753304, GSM5753305, GSM5753306, GSM5753307, GSM5753308, GSM5753309, GSM5753310, GSM5753311, GSM5753312, GSM5753313, GSM5753314, GSM5753315, GSM5753316, GSM5753317, GSM5753318, GSM5753319, GSM5753320, GSM5753321, GSM5753322, GSM5753323, GSM5753324, GSM5753325, GSM5753326, GSM5753327, GSM5753328, GSM5753329, GSM5753330, GSM5753331, GSM5753332, GSM5753333, GSM5753334, GSM5753335, GSM5753336, GSM5753337, GSM5753338, GSM5753339, GSM5753340... Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here
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Series (61)
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GSE106942 |
Genome-wide mapping of demethylase, REF6 binding targets and H3K27me3 marked regions in various Arabidopsis genetic backgrounds [ChIP-seq] |
GSE106943 |
Genome-wide mapping of demethylase, REF6 binding targets and H3K27me3 marked regions as well as expression analysis in various Arabidopsis genetic backgrounds [RNA-seq] |
GSE106944 |
Genome-wide mapping of demethylase, REF6 binding targets and H3K27me3 marked regions as well as expression analysis in various Arabidopsis genetic backgrounds |
GSE110500 |
Transcriptome dynamics of protein-coding genes during flower development in Arabidopsis |
GSE110510 |
miRNome dynamics during flower development in Arabidopsis |
GSE110539 |
Transcriptome dynamics of protein-coding genes and microRNAs during flower development in Arabidopsis |
GSE120669 |
Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin |
GSE123818 |
Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single Cell RNA Sequencing |
GSE123912 |
m6A safeguards transcriptome integrity by restricting RNA chimera formation at rearranged loci in plants |
GSE130734 |
Illumina Sequencing of Wild Type, fip37L, cpsf30-3 and cpsf30-1 mutant plants |
GSE144899 |
Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin [sperm] |
GSE146948 |
The histone variant H2A.W and linker histone H1 co-regulate heterochromatin accessibility and DNA methylation |
GSE152971 |
Chromatin regulates expression of small RNAs to help maintain transposon methylome homeostasis in Arabidopsis |
GSE165574 |
An siRNA-guided AGO protein recruits Polymerase V to initiate RNA-directed DNA methylation (smallRNA-seq dataset) |
GSE165575 |
An siRNA-guided AGO protein recruits Polymerase V to initiate RNA-directed DNA methylation |
GSE166728 |
Antagonistic activities of co-transcriptional regulators within an early developmental window sets quantitative FLC expression |
GSE169324 |
The Arabidopsis F-box protein FBW2 degrades AGO1 to avoid spurious loading of illegitimate small RNA [ncRNA-Seq] |
GSE169434 |
The Arabidopsis F-box protein FBW2 degrades AGO1 to avoid spurious loading of illegitimate small RNA |
GSE183867 |
Arabidopsis Apoplastic Fluids Contain sRNA- and Circular RNA-Protein Complexes That Are Located Outside of Extracellular Vesicles |
GSE184344 |
Phloem tissue specific genome-wide open chromatin state in Arabidopsis thaliana. |
GSE184641 |
Time course of trans-species miRNAs from Cuscuta campestris grown on Arabidopsis thaliana |
GSE185133 |
Arabidopsis Apoplastic Fluid Contains sRNA- and Circular RNA-Protein Complexes that Are Located Outside Extracellular Vesicles |
GSE192606 |
Function of ARGONAUTE proteins in the Arabidopsis shoot apical meristem (SAM) [Bisulfite-Seq] |
GSE192608 |
Function of ARGONAUTE proteins in the Arabidopsis shoot apical meristem (SAM) [RNA-seq] |
GSE192610 |
Function of ARGONAUTE proteins in the Arabidopsis shoot apical meristem (SAM) [snRNA-seq] |
GSE192611 |
Function of ARGONAUTE proteins in the Arabidopsis shoot apical meristem (SAM) |
GSE193247 |
RNA degradome analysis reveals substrates of NYN-domain containing DNE1 endoribonuclease in Arabidopsis |
GSE194404 |
Genetic effects on non-CG DNA methylation [Methyl-C-seq] |
GSE194405 |
Genetic effects on non-CG DNA methylation [RNA-seq] |
GSE194406 |
Genetic effects on non-CG DNA methylation |
GSE198394 |
An environmentally-responsive transcriptional state modulates cell identities during root development |
GSE200634 |
Strigolactone action in mitochondria triggers retrograde signaling for root growth modulation |
GSE201685 |
UBP12 and UBP13 deubiquitinases destabilize the CRY2 blue light receptor to regulate Arabidopsis growth |
GSE208340 |
Peptide ligand-mediated trade-off between plant growth and stress response |
GSE209707 |
The UBP5 histone H2A deubiquitinase counteracts PRCs-mediated repression to regulate Arabidopsis development |
GSE210631 |
Defective Processing of Cytoplasmic and Chloroplast Ribosomal RNA in the Absence of Arabidopsis DXO1 [3'RNA-seq] |
GSE210860 |
A complex role of Arabidopsis CDKD;3 in meiotic progression and cytokinesis |
GSE216952 |
Nitric Oxide controls shoot meristem activity controlling DNA methylation in Arabidopsis thaliana |
GSE223732 |
Effect of depletion of MSIL2 and MSIL4 RNA-binding proteins on gene expression in the Arabidopsis inflorescence stem |
GSE224571 |
Population-level annotation of lncRNAs in Arabidopsis thaliana reveals extensive expression and epigenetic variability associated with TE-like silencing [smallRNAseq] |
GSE224761 |
Population-level annotation of lncRNAs in Arabidopsis thaliana reveals extensive expression and epigenetic variability associated with TE-like silencing |
GSE224928 |
Transcriptome of radially growing Arabidopsis wild type and d14 mutant hypocotyls with single cell resolution revealed by nucleus RNA-seq using 10x Chomium and VASA-seq |
GSE228905 |
The SOS2–SERRATE module maintains miRNA homeostasis under salt stress |
GSE239833 |
Arabidopsis AGO1 N-terminal Poly-Q domain promotes phase separation and association with stress granules during heat stress [RNA-seq] |
GSE239834 |
Arabidopsis AGO1 N-terminal Poly-Q domain promotes phase separation and association with stress granules during heat stress [nanoPARE] |
GSE239837 |
Arabidopsis AGO1 N-terminal Poly-Q domain promotes phase separation and association with stress granules during heat stress |
GSE240736 |
Integration of shoot-derived polypeptide signals by root TGA transcription factors is essential for survival under fluctuating nitrogen environments [RNA-seq] |
GSE240737 |
Integration of shoot-derived polypeptide signals by root TGA transcription factors is essential for survival under fluctuating nitrogen environments [ChIP-seq] |
GSE240738 |
Integration of shoot-derived polypeptide signals by root TGA transcription factors is essential for survival under fluctuating nitrogen environments |
GSE240794 |
Transcriptomic changes in Arabidopsis thaliana seedlings in response to traffic noise exposure |
GSE243447 |
Transcriptome profiling of the Nitric Oxide reponsive genes in the Col-0 and ap1/cal mutant |
GSE244737 |
Nitric Oxide controls shoot meristem activity controlling DNA methylation in Arabidopsis thaliana [ChIP-seq] |
GSE253671 |
Differential usage of shared binding sites drives functional specialization of an essential family of transcription factors [ChIP-seq] |
GSE253676 |
Differential usage of shared binding sites drives functional specialization of an essential family of transcription factors |
GSE256274 |
microRNA control of stem cell reconstitution and growth in root regeneration |
GSE260654 |
Activation and memory of the heatshock response is mediated by Prion-like domains in Arabidopsis [ChIP-seq] |
GSE260655 |
Activation and memory of the heatshock response is mediated by Prion-like domains in Arabidopsis [RNA-seq] |
GSE270808 |
Gene expression profiling in response to strigolactone signalling revealed by dexamethasone treatment to SL-insensitive version of SMXL7 tagged with glucocorticoid receptor (SMXL7d53-GR) in Arabidopsis hypocotyl. |
GSE272587 |
Arabidopsis microRNA changes upon Fusarium infection |
GSE283481 |
Nonuple atg8 mutant provides genetic evidence for functional specialization of ATG8 isoforms in Arabidopsis thaliana |
GSE284119 |
Major alleles of CDCA7α shape CG-methylation in Arabidopsis thaliana |
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Supplementary data files not provided |
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