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Status
Public on Feb 10, 2003
Title
Affymetrix GeneChip Custom-Made Muscle Chip
Technology type
spotted oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens
Description
MuscleChip containing 4,601 muscle probe sets representing 1150 known genes expressed in muscle, and 2,075 EST clusters from a non-normalized subtracted muscle sequencing project (28,074 EST sequences). This included 460 novel EST clusters, showing no match to previously characterized genes in any database. Each probe set was designed to contain 20-32 25mer oligonucleotides (10-16 paired perfect match and mismatch probe pairs per gene), with each probe evaluated for hybridization kinetics (Tm), and similarity to other sequences. Approximately 120,000 oligonucleotides were synthesized by photolithography and light-activated chemistry per microarray.
Web link
http://microarray.cnmcresearch.org/musclechipindex.asp Submission date
Feb 10, 2003
Last update date
Oct 01, 2019
Contact name
Eric P Hoffman
E-mail(s)
ericphoffman@gmail.com Organization name
Binghamton University - SUNY
Department
Pharmaceutical Sciences
Street address
PO Box 6000
City
Binghamton
State/province
NY
ZIP/Postal code
13902
Country
USA
Samples (63)
GSM4230 , GSM4231 , GSM4236 , GSM4241 , GSM4363 , GSM4364
GSM4367 ,
GSM4368 ,
GSM4383 ,
GSM4385 ,
GSM4386 ,
GSM4387 ,
GSM4388 ,
GSM4389 ,
GSM4390 ,
GSM4391 ,
GSM4392 ,
GSM4393 ,
GSM4394 ,
GSM4400 ,
GSM4405 ,
GSM4406 ,
GSM4407 ,
GSM4408 ,
GSM4409 ,
GSM4410 ,
GSM4411 ,
GSM4412 ,
GSM4413 ,
GSM4414 ,
GSM4415 ,
GSM4416 ,
GSM4417 ,
GSM4423 ,
GSM4424 ,
GSM4425 ,
GSM48537 ,
GSM52521 ,
GSM52522 ,
GSM175541 ,
GSM175576 ,
GSM175577 ,
GSM175578 ,
GSM175579 ,
GSM175580 ,
GSM175581 ,
GSM175582 ,
GSM175583 ,
GSM175584 ,
GSM175585 ,
GSM175586 ,
GSM175587 ,
GSM175588 ,
GSM175589 ,
GSM175590 ,
GSM175591 ,
GSM175592 ,
GSM175593 ,
GSM175594 ,
GSM175595 ,
GSM175596 ,
GSM175597 ,
GSM175598 Series (4)
GSE465 Expression profiling in the muscular dystrophies
GSE472 Congestive heart failure in dog
GSE493 Gene expression profiling in DQA1*0501+ children with untreated dermatomyositis
GSE7286 Acute molecular responses to lengthening vs shortening muscle contractions
Data table header descriptions ID GB_ACC GenBank Accession;
OTHER_ACC Description Description
SPOT_ID
Data table ID GB_ACC OTHER_ACC Description SPOT_ID 1001_at
X60957 HSTIEMR Human tie mRNA for putative receptor tyrosine kinase
1002_f_at
X65962 HSCP450 H.sapiens mRNA for cytochrome P-450
1009_at
U51004 HSU51004 Homo sapiens protein kinase C inhibitor (PKCI-1) mRNA, complete cds
101_at
Y09305 HSDYRK4 H.sapiens mRNA for protein kinase, Dyrk4, partial
102_at
Y09306 HSDYRK6 H.sapiens mRNA for protein kinase, Dyrk6, partial
1038_s_at
U19247 HSINFGRA7 Homo sapiens interferon-gamma receptor alpha chain gene, exon 7 and complete cds
1048_at
U38480 HSU38480 Human retinoid X receptor-gamma mRNA, complete cds
1080_s_at
L00389 HUMCYP4A7 Human cytochrome P-450 4 gene, exon 7, and three Alu repeats in the 3' flank
109_at
Z97074 HSRAB9P40 Homo sapiens mRNA for Rab9 effector p40, complete cds
1102_s_at
M10901 HUMGCRA Human glucocorticoid receptor alpha mRNA, complete cds
113_i_at
X14474 HSTAUI Human mRNA for microtubule-associated tau protein
1131_at
L11285 HUMMEK2NF Homosapiens ERK activator kinase (MEK2) mRNA
1137_at
L20852 HUMGLVR2X Human leukemia virus receptor 2 (GLVR2) mRNA, complete cds
1154_at
J02645 HUMEIF2A Human translational initiation factor (eIF-2), alpha subunit mRNA, complete cds
1156_at
J03133 HUMTFSP1 Human transcription factor SP1 mRNA, 3' end
1160_at
J04444 HUMCYC1A Human cytochrome c-1 gene, complete cds
1164_at
HG3344-HT3521
ribosomal protein L65
HG3344-HT3521
1170_at
HG1155-HT4822
calcium channel voltage-gated beta 1 subunit L type alt. transcript 2 skeletal muscle isoform
HG1155-HT4822
1182_at
D42108 HUMPLCE Human mRNA for phospholipase C, complete cds
1191_s_at
AB003102 AB003102 Homo sapiens mRNA for 26S proteasome subunit p44.5, complete cds
4653 317 Kbytes .Supplementary file Size Download File type/resource GPL246.CDF.gz
810.2 Kb
(ftp) (http) CDF
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