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GEO help: Mouse over screen elements for information. |
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| Status |
Public on May 01, 2018 |
| Title |
Agilent-045251 Human Metagenome PathoChip [Probe Name Version] |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
human metagenome |
| Manufacturer |
Agilent Technologies |
| Manufacture protocol |
see manufacturer's web site at http://www.agilent.com/
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| |
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| Description |
PathoChip, a metagenomic array comprising probes for all known micro-organisms in NCBI database.
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| |
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| Submission date |
Mar 09, 2018 |
| Last update date |
May 01, 2018 |
| Contact name |
Sagarika Banerjee |
| E-mail(s) |
sagarika@pennmedicine.upenn.edu
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| Organization name |
University of Pennsylvania
|
| Street address |
3610 Hamilton Walk
|
| City |
Philadelphia |
| ZIP/Postal code |
19104 |
| Country |
USA |
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| Samples (167)
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GSM3036499, GSM3036500, GSM3036501, GSM3036502, GSM3036503, GSM3036504
GSM3036505, GSM3036506, GSM3036507, GSM3036508, GSM3036509, GSM3036510, GSM3036511, GSM3036512, GSM3036513, GSM3036514, GSM3036515, GSM3036516, GSM3036517, GSM3036518, GSM3036519, GSM3036520, GSM3036521, GSM3036522, GSM3036523, GSM3036524, GSM3036525, GSM3036526, GSM3036527, GSM3036528, GSM3036529, GSM3036530, GSM3036531, GSM3036532, GSM3036533, GSM3036534, GSM3036535, GSM3036536, GSM3036537, GSM3036538, GSM3036539, GSM3036540, GSM3036541, GSM3036542, GSM3036543, GSM3036544, GSM3036545, GSM3036546, GSM3036547, GSM3036548, GSM3036549, GSM3036550, GSM3036551, GSM5136581, GSM5136582, GSM5136583, GSM5136584, GSM5136585, GSM5136586, GSM5136587, GSM5136588, GSM5136589, GSM5136590, GSM5136591, GSM5136592, GSM5136593, GSM5136594, GSM5136595, GSM5136596, GSM5136597, GSM5136598, GSM5136599, GSM5136600, GSM5136601, GSM5136602, GSM5136603, GSM5136604, GSM5136605, GSM5136606, GSM5136607, GSM5136608, GSM5136609, GSM5136610, GSM5136611, GSM5136612, GSM5136613, GSM5136614, GSM5136615, GSM5136616, GSM5136617, GSM5136618, GSM5136619, GSM5136620, GSM5136621, GSM5136622, GSM5136623, GSM5136624, GSM5136625, GSM5136626, GSM5136627, GSM5136628, GSM5136629, GSM5136630, GSM5136631, GSM5136632, GSM5136633, GSM5136634, GSM5136635, GSM5136636, GSM5136637, GSM5136638, GSM5136639, GSM5136640, GSM5136641, GSM5136642, GSM5136643, GSM5136644, GSM5136645, GSM5136646, GSM5136647, GSM5136648, GSM5136649, GSM5136650, GSM5136651, GSM5136652, GSM5136653, GSM5136654, GSM5136655, GSM5136656, GSM5136657, GSM5136658, GSM5136659, GSM5136660, GSM5136661, GSM5136662, GSM5136663, GSM5136664, GSM5136665, GSM5136666, GSM5136667, GSM5136668, GSM5136669, GSM5136670, GSM5136671, GSM5136672, GSM5136673, GSM5136674, GSM5136675, GSM5136676, GSM5136677, GSM5136678, GSM5136679, GSM5136680, GSM5136681, GSM5136682, GSM5136683, GSM5136684, GSM5136685, GSM5136686, GSM5136687, GSM5136688, GSM5136689, GSM5136690, GSM5136691, GSM5136692, GSM5136693, GSM5136694
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| Series (2) |
| GSE111648 |
Microbial signatures in prostate cancer |
| GSE168358 |
Pathochip data of tonsil and lymph node samples |
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| Data table header descriptions |
| ID |
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| Chr |
|
| Start |
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| Stop |
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| GeneSymbol |
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| GeneName |
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| Accessions |
|
| Description |
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| Data table |
| ID |
Chr |
Start |
Stop |
GeneSymbol |
GeneName |
Accessions |
Description |
| A_14_P106428 |
19 |
4205366 |
4205425 |
ANKRD24 |
ankyrin repeat domain 24 |
ref|NM_133475 |
"Homo sapiens ankyrin repeat domain 24 (ANKRD24), mRNA." |
| A_14_P110336 |
20 |
31748361 |
31748420 |
|
|
|
Unknown |
| A_14_P126540 |
9 |
127943090 |
127943149 |
PPP6C |
"protein phosphatase 6, catalytic subunit" |
ref|NM_001123355|ref|NM_001123369|ref|NM_002721 |
"Homo sapiens protein phosphatase 6, catalytic subunit (PPP6C), transcript variant 1, mRNA." |
| A_14_P137055 |
22 |
29107921 |
29107980 |
CHEK2 |
CHK2 checkpoint homolog (S. pombe) |
ref|NM_001005735|ref|NM_007194|ref|NM_145862 |
"Homo sapiens CHK2 checkpoint homolog (S. pombe) (CHEK2), transcript variant 3, mRNA." |
| A_16_P00007064 |
1 |
6130376 |
6130435 |
KCNAB2 |
"potassium voltage-gated channel, shaker-related subfamily, beta member 2" |
ref|NM_001199861|ref|NM_003636|ref|NM_172130|ref|NM_001199860|ref|NM_001199862|ref|NM_001199863 |
"Homo sapiens potassium voltage-gated channel, shaker-related subfamily, beta member 2 (KCNAB2), transcript variant 4, mRNA." |
| A_16_P00013104 |
1 |
10489955 |
10490014 |
|
|
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Unknown |
| A_16_P00016149 |
1 |
12627920 |
12627979 |
DHRS3 |
dehydrogenase/reductase (SDR family) member 3 |
ref|NM_004753 |
"Homo sapiens dehydrogenase/reductase (SDR family) member 3 (DHRS3), mRNA." |
| A_16_P00017737 |
1 |
14703719 |
14703778 |
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Unknown |
| A_16_P00022293 |
1 |
18358786 |
18358845 |
|
|
|
Unknown |
| A_16_P00034019 |
1 |
27326679 |
27326738 |
TRNP1 |
TMF1-regulated nuclear protein 1 |
ref|NM_001013642 |
"Homo sapiens TMF1-regulated nuclear protein 1 (TRNP1), mRNA." |
| A_16_P00037786 |
1 |
30744805 |
30744864 |
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Unknown |
| A_16_P00045311 |
1 |
36690721 |
36690780 |
THRAP3 |
thyroid hormone receptor associated protein 3 |
ref|NM_005119 |
"Homo sapiens thyroid hormone receptor associated protein 3 (THRAP3), mRNA." |
| A_16_P00056166 |
1 |
44819086 |
44819145 |
ERI3 |
ERI1 exoribonuclease family member 3 |
ref|NM_024066 |
"Homo sapiens ERI1 exoribonuclease family member 3 (ERI3), mRNA." |
| A_16_P00057959 |
1 |
46464161 |
46464220 |
MAST2 |
microtubule associated serine/threonine kinase 2 |
ref|NM_015112 |
"Homo sapiens microtubule associated serine/threonine kinase 2 (MAST2), mRNA." |
| A_16_P00072251 |
1 |
57562025 |
57562084 |
DAB1 |
disabled homolog 1 (Drosophila) |
ref|NM_021080 |
"Homo sapiens disabled homolog 1 (Drosophila) (DAB1), mRNA." |
| A_16_P00089979 |
1 |
70005296 |
70005355 |
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Unknown |
| A_16_P00100480 |
1 |
77472927 |
77472986 |
ST6GALNAC5 |
"ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5" |
ref|NM_030965 |
"Homo sapiens ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (ST6GALNAC5), mRNA." |
| A_16_P00107122 |
1 |
82071129 |
82071188 |
|
|
ens|ENST00000473719|ens|ENST00000370721|ens|ENST00000370723|ens|ENST00000370725|ens|ENST00000370727|ens|ENST00000370728|ens|ENST00000370730|ens|ENST00000469377|ens|ENST00000430748 |
Unknown |
| A_16_P00122210 |
1 |
92752647 |
92752706 |
GLMN |
"glomulin, FKBP associated protein" |
ref|NM_053274 |
"Homo sapiens glomulin, FKBP associated protein (GLMN), mRNA." |
| A_16_P00125269 |
1 |
95047705 |
95047764 |
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|
gb|AK024564 |
"Homo sapiens cDNA: FLJ20911 fis, clone ADSE00547." |
Total number of rows: 61331
Table truncated, full table size 7518 Kbytes.
| Supplementary data files not provided |
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