GEO Accession viewer

GSE126763	Whole-transcriptome RNA-seq analysis of zebrafish epidemal MLCs
GSE127555	RNA-sequencing analysis of differential expression in supt16h mutants
GSE128986	Retention of paternal epigenetic memory in the developing teleost germline [alt-splicing]
GSE133130	Transcriptomic profiling of vegfc(hy-/-);vegfd(-/-) mutant hearts reveals that vegfc/d signaling and lymphatics vasculature play a role in cardiac metabolism [fresh tissue]
GSE133131	Transcriptomic profiling of vegfc(hy-/-);vegfd(-/-) mutant hearts reveals that vegfc/d signaling and lymphatics vasculature play a role in cardiac metabolism
GSE134055	A map of cis-regulatory elements and 3D genome structures in zebrafish
GSE134187	the role of SMN complex in tissue regeneration
GSE134634	A system biology approach reveals neuronal and muscles developmental defects after chronic exposure to ionising radiation
GSE135767	Single Cell RNA Sequencing Analysis of Polystyrene Microplastic Exposed and control Zebrafish Intestine
GSE136109	Single Cell RNA Sequencing and Intestinal Microbial Analysis of Polystyrene Microplastic Exposed Zebrafish Intestine
GSE136456	Transcriptionally regulated energy metabolism drives early erythropoiesis
GSE137770	Characterization of T cells from the larval zebrafish tail via single-cell RNAseq
GSE137787	Bulk transcriptomic analysis of two models of zebrafish beta-catenin-driven HCC
GSE137788	Transcriptomic analysis of two models of zebrafish beta-catenin-driven HCC
GSE138414	Genetic compensation in a stable slc25a46 mutant zebrafish
GSE138842	Dynamic Properties of the Reissner Fiber and Implications on Scoliosis
GSE138920	Dynamic Properties of the Reissner Fiber and Implications on Scoliosis II
GSE140233	Inhibition of Methyltransferase Activity of Enhancer of Zeste 2 Leads to Enhanced Lipid Accumulation and Altered Chromatin Status in Zebrafish
GSE140810	RNA-seq analysis of transcriptomic changes in macrophage-lineage cells after acute neural injury in larval zebrafish
GSE142214	RNA sequencing of zebrafish asxl1+/+ and asxl1-/-
GSE144154	Whole Genome Bisulfite Sequencing of Female Zebrafish Embryos Treated with Atrazine
GSE144944	FGFR3 is a positive regulator of osteoblast expansion and differentiation during zebrafish skull vault development
GSE146198	Exposure to low and moderate dose rate of ionizing radiation induces promoter hypomethylation znf deregulation of developmental genes in zebrafish
GSE146995	RNA-seq of hematopoietic stem and progenitor cells from 40 hours post fertilization ddx41 mutant and sibling zebrafish
GSE147253	5’ half of specific tRNAs feeds back to promote corresponding tRNA gene transcription in vertebrate embryos [small RNA-Seq, ssDRIP-seq]
GSE147715	Transcriptomic responses predict the toxic effect of parental combined exposure to DBP and DiBP on the early development of zebrafish offspring
GSE149261	Next-Generation Sequencing Revealed L-Carnitine Rescues Congenital Myopathy in Transgenic Zebrafish with Tropomyosin 3 Novel Mutation
GSE149788	Zebrafish adult skin mpeg+ cells
GSE149789	Zebrafish mpeg+ cells
GSE150751	Single-cell sequencing reveals heterogeneity effects of arsenic or/and 2,2-dichloroacetamide on zebrafish liver
GSE150839	Single-cell RNA-seq and ATAC-seq of zebrafish retina
GSE151230	Gata2 loss alters epigenetic priming and gene expression profiles in early myeloid and lymphoid progenitors leading to cytopenias [ATAC-seq]
GSE151231	Gata2 loss alters epigenetic priming and gene expression profiles in early myeloid and lymphoid progenitors leading to cytopenias [RNA-seq]
GSE151232	Gata2 loss alters epigenetic priming and gene expression profiles in early myeloid and lymphoid progenitors leading to cytopenias
GSE151238	setd2 knockout zebrafish is survivable and fertile: differential and developmental-stress-related requirements for Setd2 and histone H3K36 trimethylation in different vertebrate animals
GSE152741	Chromatin architecture transitions from zebrafish sperm through early embryogenesis [Hi-C]
GSE152744	Chromatin architecture transitions from zebrafish sperm through early embryogenesis
GSE153687	Genome-wide identification and differential expression of long non-coding RNAs in hypoxic zebrafish brain
GSE155013	mRNA-seq of Pea3 triple mutants in 10ss Danio rerio larvae
GSE155014	mRNA-seq of Pea3 triple mutants in 30hpf Danio rerio larvae
GSE155287	Deciphering Endoderm-derived Macrophage-like Metaphocytes in Zebrafish Gill and Intestine
GSE155573	Tanshinone I inhibit normal and malignant hematopoiesis by repressing EZH2 activity [zebrafish]
GSE155574	Tanshinone I inhibit normal and malignant hematopoiesis by repressing EZH2 activity
GSE155988	Single cell RNA-seq analysis of pMN neural progenitors from zebrafish
GSE156167	Transcriptome analysis of a protein-truncating mutation in sortilin-related receptor 1 (sorl1) associated with early-onset familial Alzheimer's disease indicates effects on mitochondrial and ribosome function in young-adult zebrafish brains
GSE157170	Transcriptome analysis on wild type and mvp mutant zebrafish ventricles at 7dpa by Next Generation Sequencing
GSE158851	Single-cell RNA sequencing of the cut and uncut caudal fin of zebrafish larvae
GSE159709	Spatially resolved transcriptomics reveals the architecture of the tumor-microenvironment interface
GSE160038	Using a Zebrafish Model to Identify Cellular Responses to Uropathogenic E. coli Bacteremia
GSE160051	DN-MAML-dependent regulation of zebrafish Muller glial cell gene expression
GSE160179	Notch signaling and Muller glia's regenerative response
GSE160706	DNA methylation analysis by RRBS of WT and uhrf1-hi272 mutant zebrafish whole larvae at 5 dpf
GSE160728	Transcriptomic profiling of whole larvae and the liver from dnmt1 mutant zebrafish larvae compared to their phenotypically normal siblings at 120 hpf
GSE160979	RNA-seq of erythroid cells from 40 hours post fertilization ddx41 mutant and sibling zebrafish
GSE161834	Single-cell sequencing of 12 months old zebrafish telencephalon
GSE162206	Competition for H2A.Z underlies the developmental impacts of repetitive element de-repression
GSE162207	Competition for H2A.Z underlies the developmental impacts of repetitive element de-repression
GSE162431	RRBS of sorted myeloid cells from tet mutant zebrafish embryos
GSE162435	RNA Sequencing and RRBS of sorted myeloid cells from tet mutant zebrafish embryos
GSE163483	Transcriptionally regulated energy metabolism drives early erythropoiesis (RRBS)
GSE163826	The alx3 gene functions to regulate skeletal cell differentiation timing during zebrafish neurocranium development.
GSE163907	Single cell RNA analysis of trunk neural crest cells in zebrafish
GSE164074	Crosstalk between histological alterations, oxidative stress and immune aberrations of the emerging PFOS alternative OBS in developing zebrafish
GSE164466	Changes to energy metabolism, and signal transduction (i.e. Notch and Wnt signalling) define the brain transcriptomic differences between mutations causative for early-onset familial Alzheimer’s disease or familial acne inversa in PRESENILIN 1
GSE164772	A single cell transcriptomic atlas identifies synapse-associated microglia in the developing zebrafish (single cells)
GSE165415	Slc20a1b is essential for hematopoietic stem/progenitor cell expansion in zebrafish
GSE165508	RNA sequencing analysis of unchallenged, PBS injected and S. pneumoniae infected pcsk9 KO and WT zebrafish
GSE165652	Single cell response landscape of graded Nodal signaling in zebrafish explants [bulk RNA-seq]
GSE165653	Single cell response landscape of graded Nodal signaling in zebrafish explants [single-cell RNA-seq]
GSE165654	Single cell response landscape of graded Nodal signaling in zebrafish explants
GSE165888	Heterogeneity effects of nanoplastics and lead on zebrafish intestine identified by single-cell sequencing
GSE165920	Effect of acute embryonic exposures to tris(4-chlorophenyl)methane and tris(4-chlorophenyl)methanol in the zebrafish
GSE166052	Single-cell RNA sequencing of zebrafish pancreatic cells during beta-cell regeneration
GSE166302	Effect of Smoke Dye Exposure in Zebrafish Embryos
GSE166646	Single cell RNA-seq analysis for normal lymphocytes and IRF4-driven zebrafish tumors
GSE166650	Zebrafish tumors driven by overexpression of human IRF4
GSE167554	miRNA overexpression modulates neutrophil migration
GSE168131	Bulk RNA-seq comparing expression profiles between neural crest cells experiencing high and low levels of Wnt signaling
GSE168179	A single-cell transcriptomic analysis of cranial neural crest development reveals timing of lineage decisions and novel regulators
GSE168355	Characterization of biological pathways regulating acute cold resistance of zebrafish - experiment 1
GSE168356	Characterization of biological pathways regulating acute cold resistance of zebrafish - experiment 2
GSE168357	Characterization of biological pathways regulating acute cold resistance of zebrafish
GSE168359	Establishment of Developmental Gene Silencing by Ordered Polycomb Complex Recruitment in Early Zebrafish Embryos [RNA-seq]
GSE168360	Establishment of Developmental Gene Silencing by Ordered Polycomb Complex Recruitment in Early Zebrafish Embryos [ChIP-seq]
GSE168362	Establishment of Developmental Gene Silencing by Ordered Polycomb Complex Recruitment in Early Zebrafish Embryos
GSE168961	RNAseq facilitates quantitative analysis of wildtype, pdia6 -/- and focad -/- zebrafish livers transcriptome
GSE169161	RIP-seq for Ddx3xb in zebrafish embryos
GSE169163	Transcriptomics analysis of gene expression in control and Ddx3xb knockdown zebrafish embryos
GSE169166	Transcriptomics analysis of gene expression in control and Ddx3xb knockout zebrafish embryos
GSE169168	Ribosome profiling RNA sequencing in zebrafish embryos
GSE169169	Phase separation of Ddx3xb helicase regulates maternal-to-zygotic transition in zebrafish
GSE171501	RORa is required for neutrophil migration
GSE171822	Single cell transcriptional profiles of islet1-derived ECs and the other ECs in the tail of 48 hpf zebrafish embryos
GSE173350	Single cell RNA-seq analysis of pMN neural progenitors from zebrafish [Reanalysis of GSE155988 data set]
GSE173570	Fxr signaling and microbial metabolism of bile salts in the zebrafish intestine
GSE173696	SMARTseq data of zebrafish sox10+ cells
GSE173972	Differential Ezh1/2 regulation of hemogenic fate and hematopoietic stem and progenitor cell formation from arterial endothelium
GSE174156	RNA-Seq analysis of hearts in foxc1anju18 mutants and WT zebrafish embryos
GSE175767	PRDM proteins control Wnt/β-catenin activity to regulate craniofacial chondrocyte differentiation
GSE175929	Single-cell profiling of photoreceptor cells in adult zebrafish
GSE176036	Resistance to inflammation underlies enhanced fitness in clonal hematopoiesis [II]
GSE176037	Resistance to inflammation underlies enhanced fitness in clonal hematopoiesis
GSE178186	WhiB4 is required for the reactivation of latent infection of Mycobacterium marinum in zebrafish [zebrafish RNAseq]
GSE178191	WhiB4 is required for the reactivation of latent infection of Mycobacterium marinum in zebrafish
GSE178364	Tfap2b specifies an embryonic melanocyte stem cell population that retains adult multi-fate potential
GSE178688	Identification of transcription termination defects at DNA hypomethylated transcription termination sites in DNA methyltransferase 3a-deficient vertebrates [RNA-Seq]
GSE178691	Identification of transcription termination defects at DNA hypomethylated transcription termination sites in DNA methyltransferase 3a-deficient vertebrates
GSE179096	Heterogeneity and molecular programming of progenitors for motor neurons and oligodendrocytes
GSE179134	TDP-43 condensates and lipid droplets regulate the reactivity of microglia and regeneration after traumatic brain injury
GSE179495	Transcriptomics identified mechanisms responsible for similarity and differences in effects 2 of nanomaterials across species
GSE179521	Downregulation of WT1 transcription factor gene expression is required to promote myocardial fate [ATAC-seq]
GSE179522	Downregulation of WT1 transcription factor gene expression is required to promote myocardial fate
GSE179926	Single-cell transcriptomic analysis of 36 hpf Zebrafish etv2 and jam2b positive cells
GSE180518	A comparative analysis of gene and protein expression throughout a full 28-day retinal regeneration time-course in adult zebrafish
GSE180770	CD44a functions as a regulator of p53 signaling, apoptosis and autophagy in the antibacterial immune response
GSE181503	Transcriptomics analysis of gene expression in Ddx3xb mutant injected with ddx3xbFL or ddx3xb△N
GSE181683	5’ half of specific tRNAs feeds back to promote corresponding tRNA gene transcription in vertebrate embryos [tRNA-seq]
GSE181684	5’ half of specific tRNAs feeds back to promote corresponding tRNA gene transcription in vertebrate embryos
GSE181730	Top2a promotes the development of social behavior via PRC2 and H3K27me3
GSE181748	scRNA-seq of fin and body zebrafish melanocytes
GSE181853	Transcriptome of single and double pannexin1-knock out zebrafish lines
GSE182346	Genetic and epigenetic orchestration of Gfi1aa-Lsd1-cebpa in zebrafish neutrophil development
GSE182560	The spliceosome factor sart3 regulates hematopoietic stem/progenitor cell development in zebrafish through the p53 pathway
GSE182714	Adar-mediated A-to-I editing is required for establishment of embryonic body axes in zebrafish
GSE182725	RNA-seq analysis of conventionally raised zebrafish larvae compared to germ-free zebrafish larvae and germ-free larvae treated with zebrafish metabolites.
GSE183382	adult zebrafish kidney cells
GSE183799	Genetic roles of Hnf4 family transcription factors in zebrafish development and microbial response
GSE184893	RNA m6A methylome from zebrafish zygotes, mouse liver polyA-selected RNAs, mouse embryonic stem cells, spike-in RNA controls, and single mouse oocytes and embryos
GSE186158	Single-cell transcriptomic atlas reveals the evolution of immune cells and molecules across multiple vertebrate species
GSE186163	Single cell transcriptomics reveals critical molecular programming of progenitors for motor neurons and oligodendrocytes in zebrafish
GSE186423	Activation of lineage competence in hemogenic endothelium precedes the formation of hematopoietic stem cell heterogeneity [Zebrafish.scRNA-seq]
GSE186424	Activation of lineage competence in hemogenic endothelium precedes the formation of hematopoietic stem cell heterogeneity [Zebrafish.scATAC-seq]
GSE186425	Activation of lineage competence in hemogenic endothelium precedes the formation of hematopoietic stem cell heterogeneity [Zebrafish.STRT-seq]
GSE186427	Activation of lineage competence in hemogenic endothelium precedes the formation of hematopoietic stem cell heterogeneity
GSE186565	Single-cell RNA sequencing of zebrafish hematopoietic stem cells and endothelial cells
GSE186729	Regulation of fin regeneration by a voltage-gated sodium channel
GSE186874	Enrichment and single-cell sequencing of the ventricular cells from zebrafish telencephalon
GSE186926	α6β2* nAChR Antagonist TxIB Changed Gene Expression in Zebrafish (Danio rerio) brain Induced by Alcohol Withdrawal
GSE186957	Single-cell transcriptomes and runx2b−/− mutants reveal the genetic signatures of intermuscular bone formation in teleosts
GSE188364	Regulation of chromatin accessibility in early zebrafish embryos by Pou5f3 and Sox19b transcription factors.
GSE189072	WGBS and RNA-seq of Danio rerio in HSPC generation
GSE190794	Single-Cell Analyses Reveal Early Thymic Progenitors and Pre-B Cells in the Zebrafish
GSE190921	CXCR4-CXCL12 axis promotes the efficient T cell reconstitution by the HSPCs immigration
GSE191001	Mycn regulates intestinal development through ribosomal biogenesis in a zebrafish model of Feingold syndrome 1 [bulk RNA-seq]
GSE191002	Mycn regulates intestinal development through ribosomal biogenesis in a zebrafish model of Feingold syndrome 1 [single-cell RNA-seq]
GSE191003	Mycn regulates intestinal development through ribosomal biogenesis in a zebrafish model of Feingold syndrome 1
GSE191029	Microenvironmental Control of Hematopoietic Niche Capacity via CXCL8 and Protein Kinase C
GSE191046	SGLT2 inhibitors and zebrafish
GSE191068	Zebrafish kidney regeneration transcriptome
GSE191324	Parallels between oncogene-induced cardiac neoplasia and heart regeneration in zebrafish
GSE192498	Single-cell resolution of MET- and EMT-like programs in osteoblasts during zebrafish fin regeneration
GSE193758	Toxicotranscriptomics of single cell RNA-Seq and conventional RNA-Seq in TCDD-exposed testicular tissue
GSE194284	Mapping the m1A, m5C, m6A and m7G Methylation Atlas in Zebrafish Brains under Hypoxic Conditions by MeRIP-seq
GSE194301	Next Generation Sequencing Facilitates Quantitative Analysis of Zebrafish Osteoporosis Model Transcriptomes
GSE194408	RNAseq analysis of the herbicide propyzamide on a pre-clinical model of IBD on Danio rerio model
GSE194412	Propyzamide and a pre-clinical model of IBD
GSE196814	Zebrafish her3 knockout impacts developmental and cancer-related gene signatures
GSE196846	Nrf2 dictates the neuronal survival and differentiation of embryonic zebrafish harboring compromised tRNA synthetase
GSE197348	A lysosomal regulatory circuit essential for the development and function of microglia
GSE197349	A lysosomal regulatory circuit essential for the development and function of microglia
GSE197350	A lysosomal regulatory circuit essential for the development and function of microglia
GSE197673	Alterations of immune cells heterogeneities in the aged zebrafish brain at single-cell resolution II
GSE198106	Effect of developmental (24-100 hpf) embryonic exposures to tris(4-chlorophenyl)methane and tris(4-chlorophenyl)methanol in the zebrafish
GSE198310	Cebp1 and Cebpβ transcriptional axis controls eosinophilopoiesis in zebrafish [ChIP-seq]
GSE198314	Cebp1 and Cebpβ transcriptional axis controls eosinophilopoiesis in zebrafish
GSE198476	Gene expression data from lsd1 mutant zebrafish embryos
GSE200470	Divergent composition and transposon-silencing activity of small RNAs in mammalian oocytes
GSE200577	The transcriptome profiling analysis of intestines and kidneys in conventionally raised (CV) and germ-free (GF) wild type zebrafish embryos
GSE200937	Effect of endothelial specific inhibition of Brg1 on histone marker H3K4me3 in the zebrafish genome [ChIP-seq]
GSE200938	Effect of endothelial specific inhibition of Brg1
GSE201378	Lipid droplets are a metabolic vulnerability in melanoma
GSE202193	Transcriptome analysis on hematopoietic progenitor cell from control and blf-/-;drl 4KO zebrafish embryo by Next Generation Sequencing
GSE202212	The regeneration-responsive careg element monitors activation of Müller glia after MNU-induced damage in the zebrafish retina
GSE202294	Proteostasis governs differential temperature sensitivity across embryonic cell types
GSE202639	Embryo-scale reverse genetics at single-cell resolution
GSE202912	Single-cell transcriptomic analysis of vascular endothelial cells in zebrafish embryos
GSE202949	Measuring stress response upon tissue dissociation using SLAMseq in bulk and single cells
GSE203075	Neural plate progenitors give rise to both anterior and posterior pituitary cells
GSE204744	Hoxa9/meis1-transgenic zebrafish develops acute myeloid leukemia-like disease with rapid onset and high-penetrance
GSE205103	Alpha-1 adrenergic signaling drives cardiac regeneration through activation of extracellular matrix remodeling transcriptional program in macrophages
GSE205578	High-throughput Functional Analysis of Autism Genes in Zebrafish Identifies Convergence in Dopaminergic and Neuroimmune Pathways
GSE206019	RNA-seq of endothelial cells from 28 hours post fertilization sf3b1 mutant and sibling zebrafish with Stat3 overexpression
GSE206021	SF3B1
GSE206254	RNA sequencing of zebrafish liver during development, growth and EtOH treatment
GSE206531	Toxicogenomic signatures associated with methylmercury induced developmental toxicity in the zebrafish embryos.
GSE207770	Testing biological actions of medicinal plants from Northern Vietnam on zebrafish embryos and larvae: developmental, behavioral, and putative therapeutical effects.
GSE207904	RIP-seq for Cpeb1b in zebrafish embryos
GSE207906	Cpeb1b-mediated cytoplasmic polyadenylation of shha mRNA modulates zebrafish definitive hematopoiesis
GSE208019	A realistic mixture of Persistent Organic Pollutants affects zebrafish embryogenesis and behavior
GSE208266	Pax3 loss of function delays tumor progression in kRAS-induced zebrafish rhabdomyosarcoma models
GSE209884	An anti-inflammatory activation sequence governs macrophage transcriptional dynamics during tissue injury in zebrafish
GSE210698	Metabolomic and transcriptomic profiling of adult mice and larval zebrafish leptin mutants reveal a common pattern of changes in metabolites and signaling pathways [Dataset 1]
GSE210701	Metabolomic and transcriptomic profiling of adult mice and larval zebrafish leptin mutants reveal a common pattern of changes in metabolites and signaling pathways
GSE211530	Chronic exposure to butyl-paraben causes photosensitivity disruption and memory impairment in adult zebrafish
GSE211652	Mycn regulates intestinal development through ribosomal biogenesis in a zebrafish model of Feingold syndrome 1 (RNA-seq and Ribo-seq)
GSE211981	Leptin mutation and mycobacterial infection lead non-synergistically to a similar metabolic syndrome
GSE212060	Investigate Drl and Blf genome-wide occupancy in zebrafish hematopoietic progenitors with CUT&Tag
GSE212252	Balanced SET levels favor the correct enhancer repertoire during cell fate acquisition
GSE212876	Genome-wide comparative methylation analysis reveals the fate of germ stem cells after surrogate production in teleost
GSE212888	Role of RB1 in neurodegenerative diseases: Inhibition of post-mitotic neuronal apoptosis via Kmt5b
GSE212999	Effect of chronic stress on zebrafish testicular gene expression
GSE213505	The Glucocorticoid Receptor regulates behaviour, DNA methylation and gene transcription in the adult zebrafish brain
GSE213589	Transcriptomic alterations of thallium-exposed zebrafish embryos
GSE213728	Mutations in cdon and boc affect trunk neural crest cell migration and slow-twitch muscle development in zebrafish
GSE214642	Tulp1 deficiency causes early-onset retinal degeneration through affecting ciliogenesis and activating ferroptosis in zebrafish
GSE215028	Bisphenol C inhibits liver and intestinal cell proliferation in larval zebrafis
GSE215189	A Tessellated Lymphoid Network Provides Whole-Body Antigen Surveillance in Zebrafish
GSE215956	Nucleosome-mediated competition of pioneer transcription factors
GSE215988	Single-cell chromatin landscape of non-myocytes reveals AP-1 as a key transcriptional regulator contributing to highly cooperative networks among non-myocyte subtypes during zebrafish heart regeneration
GSE216060	Dendrimer-targeted immunosuppression of microglia reactivity further enhances promotes photoreceptor regeneration kinetics in the zebrafish retina
GSE217063	Shigella induces epigenetic reprogramming of zebrafish neutrophils
GSE217486	PRDM1 DNA-binding zinc finger domain is required for normal limb development and is disrupted in Split Hand/Foot Malformation
GSE217831	H3K4me3 modification in zebrafish kidney after acute kidney injury
GSE217875	The effects of ifosfamide and citalopram on developing zebrafish
GSE217998	the anti lipid accumulation and anti liver cancer formation effect of CACF in CD36 overexpression transgenic zebrafish
GSE218107	Quiescent Müller glia heterogeneity influences regenerative response following photoreceptor ablation in the zebrafish retina
GSE218169	Labelling transcriptional response to dissociation in zebrafish larvae using scSLAMseq
GSE218857	Short-term effects of human versus bovine sialylated milk oligosaccharide microinjection on zebrafish larvae survival, locomotor behavior and gene expression
GSE218892	Specificity of the innate immune responses to different classes of non-tuberculous mycobacteria
GSE220081	Distinct and redundant roles for zebrafish her genes during osteoblast differentiation and craniofacial patterning.
GSE220546	Transcriptomic data for: Heat induces multiomic and phenotypic stress propagation in zebrafish embryos
GSE221220	Nodal coordinates the anterior-posterior patterning of germ layers and induces head formation in zebrafish explants.
GSE222074	Cpeb1b-mediated cytoplasmic polyadenylation of shha mRNA modulates zebrafish definitive hematopoiesis [RNAseq_cpeb1b_ribominus]
GSE222154	Cpeb1b-mediated cytoplasmic polyadenylation of shha mRNA modulates zebrafish definitive hematopoiesis [RIBO-Seq]
GSE223277	Transcriptional changes in 6 month post-fertilization zebrafish bbs2 -/- mutant retinas versus wild-type siblings during ongoing photoreceptor degeneration.
GSE223535	scMultiome analysis identifies embryonic hindbrain progenitors with mixed rhombomere identities
GSE223636	Differential Nodal level promotes mesendoderm cell fate segregation mediated by chromatin organization
GSE223922	Single-cell analysis of shared signatures and transcriptional diversity during zebrafish development
GSE224113	A single-cell map of maternal and zygotic mRNA dynamics during cell-type specification in zebrafish embryos [SLAM-seq]
GSE224132	Effect of paternal chronic stress on zebrafish progeny gene expression.
GSE224231	Adverse effects of SYP-3343 on zebrafish development via ROS-mediated mitochondrial dysfunction
GSE224522	The effects of atorvastatin (AVS) and afidopyropen on developing zebrafish
GSE224708	Nod1-dependent NF-kB activation initiates hematopoietic stem cell specification in response to small Rho GTPases
GSE224919	A single-cell map of maternal and zygotic mRNA dynamics during cell-type specification in zebrafish embryos
GSE224985	Dynamic changes of macrophage polarization during Salmonella infection in zebrafish
GSE225136	Mettl16 promotes hematopoietic stem and progenitor cell expansion in embryonic hematopoiesis [m6A-Seq]
GSE225137	Mettl16 promotes hematopoietic stem and progenitor cell expansion in embryonic hematopoiesis
GSE225418	ZNF469 plays a critical role in regulating synthesis of ECM
GSE225510	Gene expression profile at single cell level of the enteric nervous system (ENS) of 5 days post fertilization (dpf) zebrafish
GSE225957	Decoding the Replication Timing Program in Zebrafish: The Role of Rif1
GSE226183	The TET-BMP regulatory axis in pathogenesis of CFM [scRNA]
GSE226184	The TET-Sall4-BMP regulatory axis controls craniofacial cartilage development
GSE226367	Nervous system development related gene expression regulation in the zebrafish embryo after exposure to valproic acid and retinoic acid: a genome wide approach
GSE226750	Activation of lineage competence in hemogenic endothelium precedes the formation of hematopoietic stem cell heterogeneity [Zebrafish.Cut&Tag]
GSE227551	Transcriptomics analysis of a zebrafish model of Combined Saposin Deficiency
GSE227668	Effect of sirt6 deficiency on gene expression in zebrafish at 3 dpf
GSE227670	The zebrafish heart harbors a thermogenic beige fat depot analog of human epicardial adipose tissue
GSE228551	linc-mipep and linc-wrb encode micropeptides that regulate chromatin accessibility in vertebrate-specific neural cells
GSE228664	Integrated multi-omics analysis reveals the underlying molecular mechanism for developmental neurotoxicity of perfluorooctanesulfonic acid in zebrafish
GSE228670	Integrative multi-omics reveals analogous developmental neurotoxicity mechanisms between perfluorobutanesulfonic acid and perfluorooctanesulfonic acid in zebrafish
GSE228732	Spic is required for the differentiation of metaphocyte progenitor cells
GSE228737	single-cell RNA sequencing analysis of metaphocytes and epidermal cells
GSE228748	Metaphocytes Are IL-22BP Producing Cells Regulated by ETS Transcription Factor Spic and Essential for Zebrafish Barrier Immunity
GSE228806	Single-cell transcriptome profiling reveals macrophage and dendritic cell heterogeneity across six zebrafish organs
GSE229157	Transposable elements drive the evolution of metazoan zinc finger genes
GSE229567	RhoA GEF Mcf2lb regulates rosette integrity during collective cell migration
GSE229587	RNAseq of wild type and maternal Eevs mutant (Meevs) zebrafish embryos
GSE229939	Gene expression profile at single cell level of sclerotome-derived fibroblasts from 52 hours post fertilization (hpf) transgenic zebrafish trunks.
GSE230183	Deletion of taf1 and taf5 in Zebrafish Capitulate Cardiac and Craniofacial Abnormalities Associated with TAFopathies through Perturbations in Metabolism
GSE230236	The secreted neuronal signal Spock1 regulates the blood-brain barrier
GSE230673	Transcriptomic and Metabolomic Studies Reveal That Toll-like Receptor 2 Has a Role in Glucose-Related Metabolism in Unchallenged Zebrafish Larvae (Danio rerio)
GSE231606	Cytoskeletal Keratins Are Overexpressed in a Zebrafish Model 2 of Idiopathic Scoliosis
GSE232163	scRNAseq datasets supporting a common precursor expression program leading to brain pericyte differentiation from neural crest and mesoderm
GSE232762	Bulk RNA-Seq datasets supporting a common precursor expression program leading to brain pericyte differentiation from neural crest and mesoderm
GSE232763	A common precursor expression program leading to brain pericyte differentiation from neural crest and mesoderm
GSE232900	Single cell gene expression profiling of prenoplastic cells and myeloid cells during tumour initiation wihin a larval zebrafish model of skin oncogenis driven by inducible HRASG12V
GSE233570	RNA-seq of RNAs immunoprecipitated with eIF4E1c and eiF4E1c in early zebrafish embryos
GSE233896	A comparative analysis of gene and protein expression in chronic and acute models of photoreceptor degeneration in adult zebrafish
GSE235022	Loss of flrt2 gene leads to microphthalmia in zebrafish
GSE235025	Transcription bodies regulate gene expression by sequestering CDK9 [SLAM-seq I]
GSE235609	Znf687 recruits Brd4-Smrt complex to regulate gfi1aa expression during neutrophil development
GSE235754	Mycobacterium tuberculosis Rv0102-regulated copper uptake facilitates bacterial escape from phagolysosome
GSE236484	The effects of broflanilide on developing zebrafish
GSE236659	RNA-seq for gata1+ cells in add1 mutant zebrafish embryos and siblings at 22 hpf
GSE237095	Competition for H2A.Z underlies the developmental impacts of repetitive element de-repression
GSE237139	Dynamic Changes in Lymphocyte Populations Establish Zebrafish as a Thymic Involution Model
GSE237214	Evolution of neuronal cell classes and types in the vertebrate retina [Zebrafish]
GSE237215	Evolution of neuronal cell classes and types in the vertebrate retina
GSE237444	Anp32e protects against accumulation of H2A.Z at Sox motif containing promoters during zebrafish gastrulation
GSE237934	Osteoblasts isolated from sp7-GFP transgenics by FACS sorting of 4dpf zebrafish larvae
GSE238059	Zebrafish fbln1 mutant (ulg075) larvae at 10dpf versus AB wt
GSE239410	Common and divergent gene regulatory networks control injury-induced and developmental neurogenesis in zebrafish retina [snRNA-seq]
GSE239773	Transcriptome analysis reveals differences in developmental neurotoxicity mechanism of methyl-, ethyl-, and propyl- parabens in zebrafish embryos
GSE239788	CRISPR/Cas9-mediated Nexilin deficiency interferes with cardiac contractile function in zebrafish in vivo
GSE240026	Determinants of Motor Neuron Functional Subtypes Important for Locomotor Speed
GSE240721	Single-cell analysis of Rohon-Beard neurons implicates Fgf signaling in axon maintenance and cell survival
GSE240954	miR-29a is downregulated in progenies derived from chronically stressed males
GSE241296	Single-cell analysis of Rohon-Beard neurons implicates Fgf signaling in axon maintenance and cell survival [larva]
GSE241537	RNA-seq of female gonads isolated from juvenile eif4e1b mutant and wild-type zebrafish
GSE242134	fhl2b expression ameliorates muscular dystrophy [20 months EOM and trunk]
GSE242135	fhl2b expression ameliorates muscular dystrophy [5dpf trunk]
GSE242136	fhl2b expression ameliorates muscular dystrophy [5 months EOM and trunk]
GSE242137	fhl2b expression ameliorates muscular dystrophy
GSE242251	Functional and molecular analysis of LMNA mutations related muscular dystrophy in zebrafish
GSE242949	mTOR promotes zebrafish larvae fin regeneration through regulating macrophages activation and CaM-mTOR-dnm1l axis
GSE243256	Mapping the chromatin accessibility landscape of zebrafish embryogenesis at single-cell resolution by SPATAC-seq
GSE243820	Rtf1-dependent transcriptional pausing regulates cardiogenesis
GSE244292	A zebrafish model of Ifih1-driven Aicardi-Goutières syndrome reproduces the interferon signature and the exacerbated inflammation of patients
GSE246037	Cebp1 and Cebpβ transcriptional axis controls eosinophilopoiesis in zebrafish [bulkRNA-Seq]
GSE246039	Cebp1 and Cebpβ transcriptional axis controls eosinophilopoiesis in zebrafish [scRNA-Seq]
GSE246264	Tsc1a knockdown and Mycobacterium marinum infection
GSE246295	A syngeneic spontaneous zebrafish model oftp53-deficient, EGFRviii, and PI3KCAH1047R-driven glioblastoma reveals inhibitory roles for inflammation during tumor initiation and relapsein vivo
GSE246714	Dissecting the spatiotemporal diversity of adult neural stem cells
GSE246858	Loss of Nkd1 is dominant over loss of Axin2 in regulating Wnt signaling.
GSE247246	Cohesin composition and dosage independently affect early development in zebrafish
GSE247669	Gene expression analysis in the zebrafish fractured scale exposed to ELF-EMFs
GSE247730	The Caudal Hematopoietic Tissue is Differentially Required for Erythrocytes and Neutrophils from Definitive Hematopoiesis in Zebrafish
GSE248098	Transcriptome profiles of liver from 7dpf zebrafish larvae from control, sec31anju221 and double mutation of sec31anju221 and UPR effectors by Next Generation Sequencing
GSE248236	Transcription bodies regulate gene expression by sequestering CDK9 [SLAM-seq II]
GSE248237	Transcription bodies regulate gene expression by sequestering CDK9
GSE248488	Loss of function of FAM177A1, a Golgi complex localized protein, causes a novel neurodevelopmental disorder
GSE248538	Single-cell chromatin landscape of non-myocytes reveals AP-1 as a key transcriptional regulator contributing to highly cooperative networks among non-myocyte subtypes during zebrafish heart regeneration [ATAC-seq]
GSE248871	Nlrc3 signaling is required for hematopoietic stem cell emergence by activating Notch signaling in vertebrates
GSE249292	Dissection of anterior mesendoderm segregation at single cell level in zebrafish
GSE250450	CUT&RUN profiling of Tfap2a binding genome-wide using zebrafish embryos at 24hpf
GSE252032	Gene module reconstruction elucidates cellular differentiation processes and the regulatory logic of specialized secretion
GSE252644	Quantification of subcellular RNA localization through direct detection of RNA oxidation
GSE252788	Comparative transcriptomics coupled to developmental grading via transgenic Zebrafish reporter strains identifies conserved features in neutrophil maturation
GSE252997	Protection from starvation-induced liver atrophy.
GSE253405	Diencephalic and Neuropeptidergic Dysfunction in Zebrafish with Autism Risk Mutations
GSE253537	miR-126 knockdown and Mycobacterium marinum infection
GSE254345	Effect of phox2a knockout on the molecular profiles of hindbrain vestibular neurons in the larval zebrafish (bulk RNA-Seq)
GSE254346	Molecular characterization of hindbrain vestibular neurons in the larval zebrafish (scRNA-Seq)
GSE254415	Applications of zebrafish embryo models to predict developmental toxicity for agrochemical product development
GSE262578	Construction of Danio rerio Asymmetrical Maps (DreAM)
GSE262689	Distinct features of the regenerating heart uncovered through comparative single-cell profiling
GSE263091	Gag proteins encoded by endogenous retroviruses are required for zebrafish development