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Status
Public on Jun 13, 2005
Title
[Yeast_2] Affymetrix Yeast Genome 2.0 Array
Technology type
in situ oligonucleotide
Distribution
commercial
Organisms
Schizosaccharomyces pombe ; Saccharomyces cerevisiae
Manufacturer
Affymetrix
Manufacture protocol
The sequence information for this array was selected from public data sources GenBank® (May 2004) and Sanger Center (June 2004) for the S. cerevisiae and S. pombe genomes, respectively. Probe sets on the array include 11 oligonucleotide pairs to detect each transcript.
Catalog number
900553
Support
silicon
Description
Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Yeast Genome 2.0 Array contains probe sets to detect transcripts from both Saccharomyces cerevisiae and Schizosaccharomyces pombe, which are the two most commonly studied species of yeast. Providing comprehensive coverage of both species, the GeneChip Yeast Genome 2.0 Array includes approximately 5,744 probe sets for 5,841 of the 5,845 genes present in S. cerevisiae and 5,021 probe sets for all 5,031 genes present in S. pombe
Web link
http://www.affymetrix.com/support/technical/byproduct.affx?product=yeast-20 http://www.affymetrix.com/analysis/index.affx
Submission date
Jun 09, 2005
Last update date
Feb 21, 2017
Organization
Affymetrix, Inc.
E-mail(s)
geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone
888-362-2447
URL
http://www.affymetrix.com/index.affx
Street address
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Samples (4299)
GSM60823 , GSM60824 , GSM94606 , GSM94608 , GSM94609 , GSM94610
GSM94611 ,
GSM94612 ,
GSM94613 ,
GSM94614 ,
GSM94615 ,
GSM94616 ,
GSM94617 ,
GSM94618 ,
GSM98259 ,
GSM98260 ,
GSM98261 ,
GSM98262 ,
GSM98263 ,
GSM98264 ,
GSM98265 ,
GSM98266 ,
GSM98267 ,
GSM98268 ,
GSM98269 ,
GSM98270 ,
GSM98271 ,
GSM98272 ,
GSM98273 ,
GSM98274 ,
GSM98275 ,
GSM98276 ,
GSM98277 ,
GSM98278 ,
GSM98279 ,
GSM98280 ,
GSM98281 ,
GSM98282 ,
GSM98283 ,
GSM98284 ,
GSM98285 ,
GSM98286 ,
GSM106371 ,
GSM106372 ,
GSM106373 ,
GSM106374 ,
GSM106375 ,
GSM106376 ,
GSM116815 ,
GSM116816 ,
GSM116817 ,
GSM116818 ,
GSM116819 ,
GSM116820 ,
GSM116821 ,
GSM116822 ,
GSM116823 ,
GSM116824 ,
GSM116825 ,
GSM116826 ,
GSM144220 ,
GSM144221 ,
GSM144222 ,
GSM144223 ,
GSM144224 ,
GSM144225 ,
GSM200846 ,
GSM200847 ,
GSM200848 ,
GSM200849 ,
GSM200850 ,
GSM200851 ,
GSM200852 ,
GSM200853 ,
GSM206775 ,
GSM206776 ,
GSM206777 ,
GSM206778 ,
GSM206779 ,
GSM206780 ,
GSM206781 ,
GSM206782 ,
GSM206783 ,
GSM206784 ,
GSM206785 ,
GSM206786 ,
GSM206787 ,
GSM206788 ,
GSM206789 ,
GSM206790 ,
GSM206791 ,
GSM206792 ,
GSM210016 ,
GSM210017 ,
GSM210018 ,
GSM210019 ,
GSM210020 ,
GSM210021 ,
GSM210022 ,
GSM210023 ,
GSM218597 ,
GSM218598 ,
GSM218599 ,
GSM218600 ,
GSM218601 ,
GSM218602 ,
GSM218603 ,
GSM218604 ,
GSM218605 ,
GSM218606 ,
GSM218607 ,
GSM218608 ,
GSM218609 ,
GSM218610 ,
GSM218611 ,
GSM218612 ,
GSM218613 ,
GSM218614 ,
GSM218615 ,
GSM218616 ,
GSM218617 ,
GSM218618 ,
GSM218619 ,
GSM218620 ,
GSM218621 ,
GSM218622 ,
GSM218623 ,
GSM218624 ,
GSM218625 ,
GSM218626 ,
GSM218627 ,
GSM218628 ,
GSM218629 ,
GSM218630 ,
GSM218631 ,
GSM218632 ,
GSM218633 ,
GSM218634 ,
GSM218635 ,
GSM218636 ,
GSM218637 ,
GSM218638 ,
GSM218639 ,
GSM218640 ,
GSM218641 ,
GSM218642 ,
GSM218643 ,
GSM218644 ,
GSM218645 ,
GSM218646 ,
GSM218647 ,
GSM218648 ,
GSM218649 ,
GSM218650 ,
GSM218651 ,
GSM218652 ,
GSM218653 ,
GSM218654 ,
GSM218655 ,
GSM218656 ,
GSM233176 ,
GSM233177 ,
GSM233178 ,
GSM233179 ,
GSM233180 ,
GSM233182 ,
GSM233184 ,
GSM233191 ,
GSM233193 ,
GSM233194 ,
GSM233195 ,
GSM233196 ,
GSM237019 ,
GSM237020 ,
GSM237021 ,
GSM237022 ,
GSM237023 ,
GSM237024 ,
GSM237025 ,
GSM237026 ,
GSM237027 ,
GSM237028 ,
GSM237029 ,
GSM237030 ,
GSM237031 ,
GSM237032 ,
GSM237033 ,
GSM237034 ,
GSM237035 ,
GSM237036 ,
GSM237037 ,
GSM237038 ,
GSM237039 ,
GSM237040 ,
GSM237041 ,
GSM237042 ,
GSM237043 ,
GSM237044 ,
GSM237045 ,
GSM237046 ,
GSM237047 ,
GSM237048 ,
GSM237049 ,
GSM237050 ,
GSM237051 ,
GSM237052 ,
GSM237053 ,
GSM237054 ,
GSM237055 ,
GSM237056 ,
GSM237057 ,
GSM237058 ,
GSM237059 ,
GSM237060 ,
GSM237061 ,
GSM237062 ,
GSM237063 ,
GSM237064 ,
GSM237065 ,
GSM237066 ,
GSM239499 ,
GSM239500 ,
GSM239501 ,
GSM239502 ,
GSM239503 ,
GSM239504 ,
GSM239505 ,
GSM239506 ,
GSM239507 ,
GSM239508 ,
GSM239509 ,
GSM239510 ,
GSM239511 ,
GSM239512 ,
GSM239513 ,
GSM239514 ,
GSM239515 ,
GSM248449 ,
GSM248450 ,
GSM248451 ,
GSM248452 ,
GSM248453 ,
GSM248454 ,
GSM248455 ,
GSM248456 ,
GSM252363 ,
GSM252364 ,
GSM252365 ,
GSM252366 ,
GSM252367 ,
GSM252368 ,
GSM252370 ,
GSM252373 ,
GSM252374 ,
GSM252375 ,
GSM257776 ,
GSM257777 ,
GSM257778 ,
GSM257779 ,
GSM257780 ,
GSM257781 ,
GSM257782 ,
GSM257783 ,
GSM257784 ,
GSM257785 ,
GSM257786 ,
GSM257787 ,
GSM257788 ,
GSM257789 ,
GSM271918 ,
GSM271919 ,
GSM271920 ,
GSM271922 ,
GSM271923 ,
GSM271924 ,
GSM284868 ,
GSM284869 ,
GSM284870 ,
GSM284871 ,
GSM284872 ,
GSM284873 ,
GSM287991 ,
GSM287992 ,
GSM290901 ,
GSM290902 ,
GSM290903 ,
GSM290989 ,
GSM290990 ,
GSM290991 ,
GSM290992 ,
GSM290993 ,
GSM290994 ,
GSM290995 ,
GSM290996 ,
GSM290997 ,
GSM290998 ,
GSM290999 ,
GSM291000 ,
GSM291001 ,
GSM291002 ,
GSM291003 ,
GSM291115 ,
GSM291116 ,
GSM291117 ,
GSM291140 ,
GSM291141 ,
GSM291142 ,
GSM291435 ,
GSM291439 ,
GSM291445 ,
GSM291462 ,
GSM291523 ,
GSM291524 ,
GSM291525 ,
GSM291538 ,
GSM291539 ,
GSM291540 ,
GSM291554 ,
GSM291555 ,
GSM292045 ,
GSM296856 ,
GSM296857 ,
GSM296858 ,
GSM296859 ,
GSM296860 ,
GSM296861 ,
GSM306565 ,
GSM306567 ,
GSM306569 ,
GSM306573 ,
GSM306577 ,
GSM306581 ,
GSM306588 ,
GSM306591 ,
GSM306605 ,
GSM307217 ,
GSM307218 ,
GSM307219 ,
GSM307220 ,
GSM307221 ,
GSM307222 ,
GSM307223 ,
GSM307224 ,
GSM307225 ,
GSM307226 ,
GSM307227 ,
GSM307228 ,
GSM307229 ,
GSM307230 ,
GSM307231 ,
GSM307232 ,
GSM307233 ,
GSM307234 ,
GSM307235 ,
GSM307236 ,
GSM307237 ,
GSM307238 ,
GSM307239 ,
GSM307240 ,
GSM307241 ,
GSM307242 ,
GSM307243 ,
GSM307244 ,
GSM307245 ,
GSM307246 ,
GSM307247 ,
GSM307248 ,
GSM307249 ,
GSM307250 ,
GSM307251 ,
GSM307252 ,
GSM307253 ,
GSM307254 ,
GSM307255 ,
GSM307256 ,
GSM307257 ,
GSM307258 ,
GSM307259 ,
GSM307260 ,
GSM307261 ,
GSM307262 ,
GSM307263 ,
GSM307264 ,
GSM307265 ,
GSM307421 ,
GSM307422 ,
GSM307423 ,
GSM307424 ,
GSM307425 ,
GSM307426 ,
GSM307427 ,
GSM307450 ,
GSM307468 ,
GSM307469 ,
GSM307491 ,
GSM307492 ,
GSM312527 ,
GSM312528 ,
GSM312529 ,
GSM312530 ,
GSM312531 ,
GSM312532 ,
GSM312533 ,
GSM312534 ,
GSM312535 ,
GSM312536 ,
GSM312537 ,
GSM312538 ,
GSM312539 ,
GSM312540 ,
GSM312541 ,
GSM312542 ,
GSM312543 ,
GSM312544 ,
GSM312545 ,
GSM312546 ,
GSM312547 ,
GSM312548 ,
GSM338560 ,
GSM338561 ,
GSM338562 ,
GSM338563 ,
GSM338564 ,
GSM338565 ,
GSM338566 ,
GSM338567 ,
GSM338568 ,
GSM338569 ,
GSM338570 ,
GSM338571 ,
GSM344187 ,
GSM344188 ,
GSM344189 ,
GSM344190 ,
GSM344191 ,
GSM344192 ,
GSM344193 ,
GSM344194 ,
GSM344195 ,
GSM344196 ,
GSM344197 ,
GSM344198 ,
GSM344199 ,
GSM344200 ,
GSM344201 ,
GSM344202 ,
GSM344203 ,
GSM344204 ,
GSM344205 ,
GSM344206 ,
GSM344207 ,
GSM344208 ,
GSM344209 ,
GSM344210 ,
GSM344245 ,
GSM344257 ,
GSM344264 ,
GSM344269 ,
GSM344272 ,
GSM344274 ,
GSM344281 ,
GSM344291 ,
GSM344295 ,
GSM344297 ,
GSM344298 ,
GSM344304 ,
GSM344308 ,
GSM344310 ,
GSM344312 ,
GSM344313 ,
GSM344317 ,
GSM346067 ,
GSM346068 ,
GSM346069 ,
GSM346070 ,
GSM349717 ,
GSM349719 ,
GSM349841 ,
GSM349842 ,
GSM349843 ,
GSM349844 ,
GSM349845 ,
GSM349846 ,
GSM349847 ,
GSM356518 ,
GSM356519 ,
GSM356520 ,
GSM356521 ,
GSM356522 ,
GSM356523 ,
GSM356524 ,
GSM356525 ,
GSM356526 ,
GSM356527 ,
GSM356528 ,
GSM356529 ,
GSM356530 ,
GSM356531 ,
GSM356532 ,
GSM356533 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here
Series (316)
GSE2806
Transcriptional profile of an acs2Ts1 mutant yeast
GSE4136
Yeast Genomic Expression Patterns in Response to Low-Shear Modeled Microgravity
GSE4295
Sugar stress during fermentation (baker's yeast)
GSE4709
Gcn4p-mediated transcriptional stress response
GSE5185
Engineering Yeast Transcription Machinery for Improved Ethanol Tolerance and Production
GSE6277
Increasing NADH oxidation reduces overflow metabolism in Saccharomyces cerevisiae
GSE8122
Characterization of zfs1 as an mRNA binding and destabilizing protein in Schizosaccharomyces pombe
GSE8343
Response of Yeast (Saccharomyces cerevisiae) to Oxygen, Heme and Cobalt
GSE8453
Expression data from yeast strain containing CDC34tm allele compared to WT
GSE8799
Global Control of cell cycle transcription by coupled CDK and network oscillators
GSE9217
Transcriptomes for different level of glucose
GSE9302
A perturbation in the system leads to period doubling
GSE9423
The Oxidative Stress Response of a Lager Brewing Yeast Strain during Industrial Propagation and Fermentation
GSE9840
Comparisons of yeast strains containing the essential histone acetyltransferase, ESA1 or a bypass suppressor of ESA1
GSE9985
sua5D expression profiles
GSE10079
A Med15 - Hrp1 complex associates with fission yeast Mediator
GSE10205
Carbohydrate metabolism and the lager yeast transcriptome during brewery fermentation
GSE11282
Comparison of yeast (Saccharomyces cerevisiae) strain with histone H4 R45 mutated to H with wild type yeast strain WY139
GSE11412
Alpha-factor treatment of Saccharomyces cerevisiae
GSE11511
Identification of histone codes and crosstalk in fission yeast
GSE11651
Transcriptomic profiling of five industrial wine yeast strains at three time points during allcoholic fermentation
GSE12180
Wild type 3 hours exposure to 1 microM OGT2468
GSE12193
Wild type 3 hours exposure to 0.1 microM OGT2468
GSE12197
O-glycosylation inhibition and O-glycosylation mutants
GSE12220
Changes in Saccharomyces cerevisiae mRNA abundance following oxidative stress and DNA damage stress
GSE12221
Decay profiles of Saccharomyces cerevisiae mRNAs following oxidative stress and DNA damage
GSE12222
Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation
GSE12232
Transcriptional response in laboratory and wine strains of S. cerevisiae to growth temperature
GSE12442
Transcriptional profile of Sacchromyces cerevisiae in different levels of oxygen provision
GSE13420
Significant and Systematic Expression Differentiation in Long-Lived Yeast Strains
GSE13684
High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors
GSE13695
Transcriptomic profiling of wine yeast strains during colombar fermentation
GSE13755
Involvement of ergosterol contents in the tolerance to vanillin in Saccharomyces cerevisiae
GSE13889
Gate-Keeping transcription through histone H3 K42, a novel site of methylation in the yeast nucleosome core
GSE14227
Time-course gene expression profiles of a Saccharomyces cerevisiae wild type and long-lived sch9-delta mutant
GSE14319
Genetic Control of Cellular Quiescence in S. pombe
GSE14748
Yeast genomic expression patterns in response to deoxynivalenol
GSE14942
Effect of copper ion on recovery process from freeze-thaw injury in Saccharomyces cerevisiae
GSE15108
Transcription profile of fission yeast
GSE15202
Histone H2B R102A
GSE15203
Histone H2B K111A
GSE15352
Dynamic transcriptional and metabolic responses in yeast adapting to temperature stress.
GSE15461
Insufficiency of Copper Ion Homeostasis Causes Freeze-Thaw Injury of Yeast Cells
GSE15936
Expression data from S. cerevisiae under serial stresses
GSE16040
S. pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from S. cerevisiae
GSE16346
Analysis of the effect of L-carnitine supplementation on global expression of Sachharomyces cerevisiae cultures
GSE16376
Differential yeast gene transcription during brewery propagation
GSE16652
Transcriptional Profiling of Saccharomyces cerevisiae Upon Exposure to Saxitoxin
GSE16799
Expression data for UV time course in Saccharomyces cerevisiae wild-type and mutant strains
GSE16980
Yeast background with high-concentration spikes
GSE17257
Expression data of Saccharomyces cerevisiae treated with clioquinol
GSE17262
S. pombe acetyltransferase mutants identifies redundant pathways of gene regulation, Affymetrix dataset
GSE17298
Expression profiling of S. pombe acetyltransferase mutants identifies redundant pathways of gene regulation
GSE17364
Sodium arsenate response of wild type and slt2 deficient cells
GSE17367
Yeast Genomic Expression Patterns of PTC1 null mutant in Response to Aflatoxin B1 (AFB1)
GSE17716
Transcription data from Saccharomyces cerevisiae yeast
GSE17877
Responses to inhibitors in an industrial strain of yeast and the adapted strains
GSE18157
Gene expression underlying the effects of biotin deficiency in rat liver, worms and yeast
GSE18310
Eos1 involvement in zinc homeostasis
GSE18314
High-level furfural resistance in S. cerevisiae is based on NADPH-dependent reduction by at least two oxireductases
GSE18334
Profiling oxidative stress in Saccharomyces cerevisiae by oxidation of transcription factor Swi6p
GSE18456
Yeast Genomic Expression Patterns in Response to Zymolyase Treatment
GSE18488
Yeast expression data from conditions that inhibit sirtuins
GSE18994
Expression profile of ypr045c∆ mutant
GSE19016
The metabolic responce to iron deficiency in Saccharomyces cerevisiae
GSE19213
Expression data from oxidant treated yeast
GSE19302
Expression profile of the “heat-inducible N-degron” of Nab2 (nab2-td)
GSE19511
Equivalent mutations in the eight subunits of the chaperonin CCT produce dramatically different cell phenotypes.
GSE19569
Expression data from wild-type FY4 and GCR2 deletion strain
GSE20108
Responses to ethanol in haploid and diploid strain
GSE20155
Comparative transcriptome analysis of yeast expressing the fungal desaturases
GSE20351
Profiling the transcriptional response upon deletion of PUN1
GSE20378
PTC1 mutant Yeast Genomic Expression Patterns in Response to deoxynivalenol
GSE20566
Glucose uptake is required for glucose-stimulated transcriptional response in Saccharomyces cerevisiae
GSE20591
Expression data of β-subunit of Snf1 kinase in yeast Saccharomyces cerevisiae
GSE21187
Chronological Aging of Yeast in the Absence of Caloric Restriction: Cell Immobilization Uncouples Reproduction from Metabolism
GSE21479
Whole genome sequencing of Saccharomyces cerevisiae: from genotype to phenotype for improved metabolic engineering applications
GSE21571
In the absence of H2A.Z, the SWR1 histone replacement complex causes genetic instability, stress and genome transcription misregulation
GSE21870
Expression data from Saccharomyces cerevisiae Dnup60, Dada2, and Dnup60 Dada2 cells
GSE21988
Nutrient-dependent regulation of gene expression in Saccharomyces cerevisiae
GSE22122
Phosphoglycerate mutase knock-out mutant Saccharomyces cerevisiae: physiological investigation and transcriptome analysis
GSE22269
Expression data from Saccharomyces cerevisiae treated with Small Molecule Enhancers of Rapamycin (SMERs)
GSE22270
Expression data from Saccharomyces cerevisiae Met30 temperature-sensitive strain
GSE22271
Expression data from Saccharomyces cerevisiae temperature-sensitive strains specific for SCF core components (Skp1, Cullin (Cdc53), E2 enzyme (Cdc34)) and the F-box protein Cdc4.
GSE22272
Chemical Genetics of TOR Identifies an SCF Family E3 Ubiquitin Ligase Inhibitor
GSE22644
Expression data of yeast with and without ribosomal protein Rpl12ap or Rpl12bp
GSE22809
Expression data from lack of DNA topoisomerase I, DNA topoisomerase II and complete lack of both topoisomerases
GSE22832
Transcriptional response of Sacchromyces cerevisiae to change in oxygen provision
GSE23012
Metabolic and transcriptional dynamics during the transition from carbon limitation to nitrogen limitation in Saccharomyces cerevisiae
GSE23602
Analysis of cohesin-dependent gene regulation in fission yeast
GSE23711
Expression profiling of nhp6 mutants and wildtype yeast cells (Saccharomyces cerevisiae)
GSE24053
Expression data from wild-type FY4 and the BAS1-deletion strain
GSE24054
Expression data from wild-type FY4 and the PHO2-deletion strain
GSE24056
Expression data from wild-type FY4 and the GCN4-deletion strain
GSE24057
Expression data from wild-type FY4 and the TF-KOs BAS1-, PHO2-, GCN4- and GCR2-deletion strains
GSE24234
Experimental systems biology: Lessons from an integrated, multi-laboratory study in yeast
GSE24266
Yeast (Saccharomyces cerevisiae) Overexpression suppression study
GSE24380
Expression data from wild-type and H2B K37A mutant yeast histones
GSE24421
Interaction of Snf1 with TORC1 in yeast Saccharomyces cerevisiae
GSE24645
Revealing the beneficial effect of protease supplementation to high gravity beer fermentations using “–omics” techniques
GSE24802
Expression data from Saccharomyces cerevisiae strains deleted for different subunits of the THO/TREX complex
GSE24888
Phytochemical variations in medicinal herbs affecting bioefficacy: Equisetum arvense extracts in the global market place as a case study
GSE25002
Expression data from Saccharomyces cerevisiae expressing Candida albicans Nik1p comparing osmotic stress and fludioxonil treatment
GSE25541
cAMP/PKA signaling balances respiratory activity with mitochondria dependent apoptosis via transcriptional regulation
GSE26171
Yeast Genomic Expression Patterns in Response to Patulin and Ascorbic acid
GSE26303
Expression profile of nab2-1 mutant
GSE26829
Measurements of mRNA abundance and decay for two strains 211 (wt) and 212 (mutant)
GSE26923
Expression data from S. cerevisiae, S288C with graded GCN5 F221A
GSE26925
Gene expression response to the antifungal compound plakortide F acid in S. cerevisiae
GSE26929
Expression data from yeast strain VIN13 overexpressing the transcription factor SOK2
GSE27062
Balancing Protein Folding and Disulfide Bond Formation Rates is Key to Mitigating Secretory Stress
GSE27085
Expression data from yeast strain VIN13 in pure-culture fermentations and in mixed fermentations with co-inoculated Oenococcus oeni strain S6
GSE27086
Expression data from yeast strain VIN13 in small and large scale alcoholic fermentations.
GSE27185
System level characterization of galactose mutants of yeast
GSE27234
Dot1 and Histone H3K79 Methylation in Natural Heterochromatic and HML/HMR Silencing
GSE27235
Mutations in cohesin-associated genes impair protein translation
GSE28225
Detection of S. cerevisiae fragments in the genome of S. bayanus strains with aCGH on Yeast_2 Affymetrix array.
GSE28677
Gene expression data from yeast exposure to alachlor
GSE28794
Expression data from yeast cells with pop2 deletion and overexpressing STM1 or STM1 R237K mutant
GSE29273
Transcriptional profile analysis of Saccharomyces cerevisiae in second fermentation
GSE29331
Expression data from diclofenac-treated yeast cells
GSE29353
Expression data for haploid Saccharomyces cerevisiae strains growing in a defined low glucose medium.
GSE29355
Transcriptional profile of an eca39∆ mutant fission yeast
GSE29358
Mammalian AMP-activated protein kinase has only a partial functional redundancy with Snf1 in Saccharomyces cerevisiae
GSE29371
Transcription data from Saccharomyces cerevisiae yeast (II)
GSE29420
Expression data of pmr1∆ mutants
GSE30025
The Global Transcriptional Response of Fission Yeast to Hydrogen Sulfide
GSE30051
Dynamics of two oscillation phenotypes in S. cerevisiae [2hr]
GSE30052
Dynamics of two oscillation phenotypes in S. cerevisiae [4hr]
GSE30053
Dynamics of two oscillation phenotypes in S. cerevisiae reveal a network of genome-wide transcriptional and cell cycle oscillators.
GSE30054
Genome wide transcriptional oscillation for Saccharomyces cerevisiae CEN.PK122
GSE31176
Expression data from yeast (wild type, rlm1 and swi3 mutants) exposed to Congo Red
GSE31326
Expression data from the partially synthetic yeasts SynIXR-1D, -6B, -22D, and controls.
GSE31366
Responses to multi-inhibitors in industrial stain of yeast and the adapted strains
GSE31369
Expression profiling of rpb1-12XWTCTD and rpb1-12XS2ACTD fission yeast strains.
GSE31642
Expression profile in wild type, fkh2delta and fkh2-S2A mutants
GSE31703
Ecological success of a group of Saccharomyces cerevisiae / Saccharomyces kudriavzevii hybrids in the Northern European wine making environment.
GSE31774
Effect of loss of function of Gal11/Med15 and Med3 from the Mediator tail module in budding yeast
GSE32418
Integrated analysis of the transcriptome-lipidome reveals the interactions of inositol-choline and SNF1 in controlling lipid biosynthesis
GSE32974
Cyclin-dependent kinases are regulators and effectors of oscillations driven by a transcription factor network
GSE33077
Expression data from S. cerevisiae
GSE33228
Expression profiling of wild-type and set3D fission yeast strains
GSE33276
Gene expression profiles of S. cerevisiae under heat stress
GSE33320
Expression data of yeast genes treated with rapamycin and compound CID 3528206
GSE33427
Genome-wide Response of Saccharomyces cerevisiae upon Arsenate Exposure
GSE34117
Expression Data from the Riesling grape must fermentation by industrial M2 and M2 nsf1∆ S. cerevisiae strains for functional characterization of the NSF1 (YPL230W) gene via Correlation Clustering-based method
GSE34757
Microarray analysis of Saccharomyces cerevisiae expressing the Hsp90 mutant hsc82-W296A
GSE34964
Transcriptomic analysis of the oxygen response in Saccharomyces cerevisiae EC1118 under wine fermentation conditions
GSE35009
Post-transcriptional regulation of cell-cell interaction protein-encoding transcripts by Zfs1p in S. pombe
GSE35281
HIRA, a Conserved Histone Chaperone, Plays an Essential Role in Low-dose Stress Response via Transcriptional Stimulation in Fission Yeast
GSE35604
Gene expression response to the antifungal compound 6-Nonadecynoic acid (6-NDA) in Saccharomyces cerevisiae and Candida albicans
GSE36118
Recovery of phenotypes obtained by adaptive evolution through inverse metabolic engineering
GSE36151
Identification of a complex genetic network involved in Saccharomyces cerevisiae colony morphology
GSE36298
Integrated analysis, transcriptome-lipidome, reveals the effects of INO-level (INO2 and INO4) on lipid metabolism in yeast
GSE36518
Genome sequecing of yeast strain evolved under high glucose
GSE36599
Gene expression profile in yeast under physiological changes of stress adaptation and stress recovery
GSE36601
Yeast under physiological changes of stress adaptation and stress recovery
GSE36914
Gene expression profiles of S. cerevisiae under acetic acid stress
GSE36954
Yeast genomic expression patterns in response to type B trichothecenes
GSE36955
Yeast genomic expression patterns in response to zymolyase treatment
GSE36958
Gene expression profiles of WT and ime4-/- mutant yeast cells, under vegetative and meiosis-inducing conditions
GSE37005
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
GSE37241
Nuclear tRNA sequestering slows aging by a mechanism similar to dietary restriction
GSE37466
Global Regulation of Nucleosome Organization And Transcription By The Yeast Ssn6-Tup1 Corepressor (expression)
GSE37467
Global Regulation of Nucleosome Organization And Transcription By The Yeast Ssn6-Tup1 Corepressor
GSE37599
Expression data of Saccharomyces cerevisiae CEN.PK.113-7D grew in Batch and Chemostat condition using for comparison of RNA-seq and Microarray data
GSE38601
The Fun30 ATP-dependent nucleosome remodeler promotes resection of DNA double-strand break ends
GSE38635
Expression data from dietary restricted budding yeast
GSE38848
Expression data from Saccharomyces cerevisiae
GSE39065
Adaptively evolved yeast mutants on galactose shows trade-offs in carbon utilization on glucose.
GSE39311
Expression data from Saccharomyces cerevisiae WT, WT(hsf1), hac1∆ and hac1∆(hsf1)
GSE39950
Expression data from wild-type and rph1-deleted yeasts
GSE40116
mRNA profiling of glucose-repressed 14-3-3 and hdac yeast mutants
GSE40399
Distinct Signaling Roles of Ceramide Species in Yeast Revealed Through Integromics Analyses
GSE40747
Expression data of Schizosaccharomyces pombe deletions involved in DNA damage response
GSE40817
Expression data from S. cerevisiae after evolution under diverse conditions
GSE40934
Chemostat expression data of amylase producing yeast Saccharomyces cerevisiae
GSE41094
Transcript analyses of cisplatin and Sky1 effects in Saccharomyces cerevisiae
GSE41362
Gene expression by myriocin treatment
GSE41659
Saccharomyces cerevisiae stress responses to HMF and furfural
GSE41711
Gene expression profile during Ebselen treatment in budding yeast
GSE41860
Time-course expression data during assurance of the chronological longevity by caloric restriction in budding yeast
GSE42458
Budding yeast Wapl controls sister chromatid cohesion maintenance and the chromosome condensation status [expression]
GSE42460
Budding yeast Wapl controls sister chromatid cohesion maintenance and the chromosome condensation status
GSE43248
Expression data from non sexual flocculation cells of S. pombe
GSE43250
Expression data from sexual flocculation cells of S. pombe
GSE43827
Expression profile of S. pombe cells with ribosomal protein L32 paralogs
GSE46652
Expression data from Saccharomyces cerevisiae with Rnase H overexpression
GSE47050
Expression data from S. cerevisiae following tRNA gene deletion
GSE47712
Functional studies of the Yeast Mediator Tail Module Subunits
GSE47713
Expression data from polysomal, nonpolysomal, and total RNAs in the S. cerevisiae tRNA trafficking mutants, msn5 and mtr10
GSE47820
Gene expression changes of Saccharomyces cerevisiae to linoleic acid hydroperoxide
GSE49025
Expression data from Saccharomyces cerevisiae
GSE49650
Checkpoints Couple Transcription Network Oscillator Dynamics to Cell-Cycle Progression
GSE50182
Saccharomyces cerevisiae stress responses to HMF and furfural (xylose and glucose) Oct
GSE50186
Expression data from Saccharomyces cerevisae strains deleted for the RNA-binding hnRNP Npl3
GSE50187
Microarray and ChIP-chip of Rrm3-Flag in wild-type and npl3 cells, and ChIP-chip of Npl3-Myc in wild type cells
GSE50440
Expression data from Saccharomyces cerevisiae histone H2A mutants
GSE50728
Expression data from Saccharomyces cerevisiae and Saccharomyces pastorianus var. carlsbergensis
GSE50899
Expression data from fission yeast Schizosaccharomyces pombe under nitrosative stress
GSE50947
Expression data from Saccharomyces cerevisiae strains carrying the rna14-1 or the rna15-1 allele
GSE50986
Expression data from fission yeast deletion mutant of Klf1, a C2H2 zinc finger-transcription factor, in G0 and VE phases
GSE52259
Expression data from the Schizosaccharomyces pombe opi10- strain.
GSE52759
Isp7 is a novel regulator of amino acid uptake in the TOR signaling pathway
GSE53125
Gene expression data from yeast exposure to equitoxic doses of six different pesticides
GSE53126
Gene expression data from yeast exposure to pyrimethanil
GSE53774
Systematic analysis of ESCRT mutants reveals an essential function for the MVB pathway in amino acid recycling.
GSE54300
Gene expression analysis of S. cerevisiae treated with the histone deacetylase inhibitor CG-1521
GSE54340
Expression data from Saccharomyces cerevisiae strains carrying the spt16-11 or the pob3-7 allele
GSE54741
Microarray analysis comparing yeast Eco1 mutant W216G to mutants of FOB1 and RAD61
GSE54743
The cohesin acetyltransferase Eco1 coordinates rDNA replication and transcription
GSE54844
Dynamic mRNA gene expression during a nutritional upshift from proline to glutamine
GSE54850
Dynamic mRNA gene expression during a nutritional downshift from glutamine to proline
GSE54851
Dynamic mRNA gene expression following a rapamycin treatment
GSE54852
Inferring causal metabolic signals that regulate the dynamic TORC1-dependent transcriptome
GSE54951
Response of Saccharomyces cerevisiae (Dal80Δ) to linoleic acid hydroperoxide
GSE55081
Expression data from yeast wild type (WT) and sod1Δ strains after treatment with hydrogen peroxide (H2O2)
GSE55223
Expression data from Saccharomyces cerevisae RNAPII mutant strains
GSE55508
Chronological Aging of Yeast in SD medium
GSE55804
Expression data from 26972c yeast ± bHLHm1 (SAT1)
GSE55925
Population Structure and Comparative Genome Hybridization of European flor yeast reveal a unique group of Saccharomyces cerevisiae strains with few gene duplications in their genome
GSE56641
Expression data from aged wild-type, met15Δ and rtg3Δ met15Δ yeast
GSE56702
Expression data from Saccharomyces cerevisiae strains deleted for the THSC/TREX-2 subunits Thp1, Sac3 and Sus1
GSE56703
Microarray and ChIP-chip analyses of the THSC/TREX-2 complex
GSE56991
The Scc2NIPBL/Scc4MAU2 complex acts in sister chromatid cohesion and transcriptional regulation by maintaining nucleosome-free regions [microarray]
GSE56994
The Scc2NIPBL/Scc4MAU2 complex acts in sister chromatid cohesion and transcriptional regulation by maintaining nucleosome-free regions.
GSE59596
Transcriptional data from yeast expressing mammalian PIK3CA
GSE61243
Expression data from yeast heterologously expressing αENaC, CFTR or Kir2.1 [αENaC]
GSE61244
Expression data from yeast heterologously expressing αENaC, CFTR or Kir2.1 [CFTR]
GSE61245
Expression data from yeast heterologously expressing αENaC, CFTR or Kir2.1 [Kir2.1]
GSE61246
Expression data from yeast heterologously expressing αENaC, CFTR or Kir2.1
GSE61341
Functional genomic analysis reveals overlapping and distinct features of chronologically long-lived yeast populations
GSE61530
Inactivation of the Budding Yeast Cohesin Loader Scc2 alters Gene Expression both Globally and in Response to a Single DNA Double Strand Break [expression array]
GSE61698
Expression data of S. pombe wild-type and sgo2-deleted strains
GSE62120
Time dynamics of quantitative protein and mRNA levels reveals extensive translational regulation after stress
GSE62161
Expression profile from Saccharomyces cerevisiae strains deleted for PMR1 treated with 5mM CaCl2
GSE62399
Genome-wide expression profiling after Allyl Alcohol treatment in Saccharomyces cerevisiae
GSE62400
Genome-wide expression profiling after Valproic acid treatment in Saccharomyces cerevisiae
GSE62494
Inactivation of the Budding Yeast Cohesin Loader Scc2 alters Gene Expression both Globally and in Response to a Single DNA Double Strand Break
GSE63663
Yeast Genomic Expression Patterns in Response to glucosylated mycotoxin
GSE64468
Molecular mechanism of flocculation self-recognition in yeast and its role in mating and survival
GSE65666
Expression profile in Overexpression of GST,GST-Med3
GSE66521
Transcriptomic response of Saccharomyces cerevisiae in mixed-culture wine fermentation with Hanseniaspora guilliermondii
GSE66685
Expression data from mutant of RSC chromatin-remodeling complex in respiratory growth
GSE67272
Nitric oxide signaling and its role in oxidative stress response in Schizosaccharomyces pombe
GSE67428
Evolutionary engineering of a wine yeast strain revealed a key role of inositol and mannoprotein metabolism during low-temperature fermentation
GSE68159
Gene expression changes in a histone sprocket arginine mutant in histone H2A R78A
GSE68435
Yeast m6A methylated mRNAs are enriched on translating ribosomes during meiosis, and under Rapamycin treatment
GSE68487
Expression data from Saccharomyces cerevisae strains overexpressing RNA-binding hnRNP Yra1
GSE68488
YRA1 overexpression microarray and ChIP-chip
GSE68731
Expression analysis of RPA12Δ in Saccharomyces cerevisiae (BY4741)
GSE68753
Deciphering a functional gene network underlying robustness to protein overproduction
GSE69714
Expression data of S. pombe wild-type and subtelomere-deleted strains
GSE70438
Microarray gene expression study of cycling vs arrested S. Pombe minimal cells
GSE70717
Cdk1 activity levels drive periodic transcription independently of cell cycle progression
GSE71433
Expresion data from yeast (wild type and gcn5 mutants) exposed to Congo Red (CR)
GSE71820
Atf1 overexpression gene expression changesS. pombe
GSE72423
Systematic identification of changes in the yeast protein interaction network in response to environmental, chemical, and genetic perturbation [transcriptome data]
GSE72425
Systematic identification of changes in the yeast protein interaction network in response to environmental, chemical, and genetic perturbation
GSE73618
Spc1/ Spc1K49R overexpression - gene expression changes in S. pombe
GSE73998
Genome wide expression profile of ada1 and gcn5 deletion strains in Saccharomycescerevisiae
GSE74177
Analysis of transcriptional profiles in Saccharomyces cerevisiae exposed to bisphenol A
GSE74259
Yeast response to TFM exposure: time course
GSE75447
Comparative transcriptome analysis of basal gene expression in Wild-type and Sen1ΔN mutant of Saccharomyces cerevisiae
GSE75694
G1/S cyclin-CDKs promote cell-cycle transcription by relieving the inhibition of a pulse-generating transcription factor network
GSE76206
Expression data from SSG1 long-lived mutant
GSE76985
Genome-wide monitoring of gene expression in Saccharomyces cerevisiae upon KP1019 treatment
GSE78267
Altered cell signaling in the absence of Dynamin function: a transcriptomic approach from yeast to humans (yeast)
GSE80394
Expression data from yeast exposed to Caspofungin (wild type strain and rlm1, slt2, msn2/4 and bcy1 mutants) and Aminocandin (wild type strain)
GSE80748
Transcriptomes of a xylose-utilizing industrial flocculating Saccharomyces cerevisiae strain cultured in media containing different sugar sources
GSE80822
Comparative transcriptomes reveal novel evolutionary strategies adopted by Saccharomyces cerevisiae with improved xylose utilization capability
GSE81666
Expression data of nuclear mRNA export mutant rae1-167 cells
GSE81775
The histone variant H2A.Z promotes initiation of meiotic recombination (expression)
GSE81777
The histone variant H2A.Z promotes initiation of meiotic recombination
GSE82324
Expression data from yeasts under non-caloric restriction (NR), caloric restriction (CR) and rapamycin treatment (RM)
GSE83267
Nuclear mRNA quality control is bypassed for rapid export of stress responsive transcripts (Microarray)
GSE84569
Transcriptomic analyses of IXR1 gene deletion in Saccharomyces cerevisiae and its increased resistance to cisplatin treatment.
GSE89286
Expression data from Saccharomyces cerevisiae with eEF1A overexpression
GSE89875
Expression data from budding yeast exposed to simulated asbestos mine drainage
GSE94793
Expression data from Saccharomyces cerevisiae
GSE94945
Expression data from Saccharomyces cerevisiae upon honokiol treatment
GSE96651
Genome reprogramming in Saccharomyces cerevisiae upon nonylphenol exposure
GSE96830
Transcription of Nearly All Yeast RNA Polymerase II-Transcribed Genes Is Dependent on Transcription Factor TFIID
GSE96849
SAGA Is a General Cofactor for RNA Polymerase II Transcription
GSE96997
Investigating global transcript dynamics in mitotically arrested budding yeast cells
GSE97981
Expression data from Saccharomyces cerevisiae BY4741 and BY4741hsp30Δ cells grown at 30°C and following exposure at 40°C for 30 min.
GSE99869
Loss of arginine methylation in Saccharomyces cerevisiae leads to the dysregulation of phosphate-associated genes and processes
GSE101178
Yeast response to TFM exposure over time (YPD)
GSE101749
Gene expression response to eupolauridine-9591 (E9591) and liriodenine methiodide (LMT) in Saccharomyces cerevisiae
GSE107482
Transcriptional data from yeast expressing mammalian AKT1
GSE110022
Functional impact of the H2A.Z histone variant during meiosis in Saccharomyces cerevisiae
GSE113118
Expression data from Saccharomyces cerevisiae strains deleted for the nucleoporin Nup84
GSE115460
Expression data from Saccharomyces cerevisiae F12 cells in the presence of insoluble solids at high concentration
GSE115660
RNA microarray studies of aspirin's effect on MnSOD-deficient mutant [EG110, (MT)] and wild-type [EG103, (WT)] Saccharomyces cerevisiae yeast cells
GSE117779
Transcriptome data from high density, low density and Rho0 yeast cell types
GSE117883
The Msn2/4-like gene transcription factor Com2 (ORF YER130) is a key player of S. cerevisiae response and tolerance to sulphur dioxide
GSE118817
Slx5/Slx8-dependent ubiquitin hotspots on chromatin contribute to stress tolerance [Gene expression]
GSE118818
Slx5/Slx8-dependent ubiquitin hotspots on chromatin contribute to stress tolerance
GSE122152
Gene expression of yeast fermentor culture after circadian temperature entrainment
GSE124143
Expression data from Saccharomyces cerevisiae carrying the dis3E729K mutation
GSE124908
Expression data from wt, pop2, pbp1, and mpt5-deletion yeast cells.
GSE125759
Whole transcriptome analysis of cadmium sulphide quantum dots response in Saccharomyces cerevisiae
GSE129200
Expression data from S.cerevisiae treated with tunicamycin
GSE129688
UBB+1-induced activation of autophagy reduces cytotoxicity of amyloid-β in yeast
GSE132186
Yeast heat shock response at 37C, 42C and 46C
GSE159167
Expression data from parental and evolved Saccharomyces cerevisiae F12 cells in the presence of insoluble solids at high concentration and lignocellulose-derived inhibitors
GSE162513
Scaling of cellular gene expression with ploidy
GSE193190
Expression data from Saccharomyces cerevisiae
GSE201413
Gene expression comparison between yeast histone H2B WT and H2B R95A mutant without and with rapamycin treatment.
GSE210785
Transcriptional data from yeast treated with 10 mg/ml of neomycin sulfate for 4h
GSE210964
Expression data from Saccharomyces cerevisiae
GSE218764
Physiological and molecular characterization of yeast cultures pre-adapted for fermentation of lignocellulosic hydrolysate
GSE220290
Spt3 and Spt8 are involved in the formation of a silencing boundary by interacting with TATA-binding protein
GSE230739
GTP-dependent regulation of heterochromatin fluctuations at subtelomeric regions in S. cerevisiae
GSE236671
Transcriptomic data from yeast after heterologous overexpression of human IRAK kinases
GSE236799
Expresion data from yeast (wild type strain and pat1 mutant) exposed to Congo Red (CR)
Relations
Alternative to
GPL9671 (Alternative CDF)
Alternative to
GPL13150 (Alternative CDF)
Data table header descriptions
ID
Affymetrix Probe Set ID
ORF
Entrez Gene locus
SPOT_ID
ORGANISM
Species Scientific Name
Annotation Date
The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Representative Public ID
The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Sequence Source
The database from which the sequence used to design this probe set was taken.
Transcript ID(Array Design)
Target Description
GenBank description associated with the representative public identifier. Blank for some probe sets.
Gene Title
Title of Gene represented by the probe set.
Gene Symbol
A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID
Entrez Gene database UID
SGD accession number
SGD: Saccharomyces Genome Database
Gene Ontology Biological Process
Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component
Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function
Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Data table
ID
ORF
SPOT_ID
ORGANISM
Annotation Date
Representative Public ID
Sequence Source
Transcript ID(Array Design)
Target Description
Gene Title
Gene Symbol
ENTREZ_GENE_ID
SGD accession number
Gene Ontology Biological Process
Gene Ontology Cellular Component
Gene Ontology Molecular Function
1769308_at
YKR009C
Saccharomyces cerevisiae
Mar 13, 2009
YKR009C.S1
Affymetrix Proprietary Database
YKR009C
S. cerevisiae YKR009C /GEN=FOX2 /DB_XREF=GI:6322861 /SEG=NC_001143:-453995,456697 /DEF=Multifunctional enzyme of the peroxisomal fatty acid beta-oxidation pathway; has 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase activities /NOTE=Fox2p; go_component: peroxisomal matrix [goid GO:0005782] [evidence TAS]; go_function: 3-hydroxyacyl-CoA dehydrogenase activity [goid GO:0003857] [evidence TAS]; go_function: enoyl-CoA hydratase activity [goid GO:0004300] [evidence TAS]; go_process: fatty acid beta-oxidation [goid GO:0006635] [evidence TAS]
Multifunctional enzyme of the peroxisomal fatty acid beta-oxidation pathway; has 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase activities
FOX2
S000001717
0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation
0005777 // peroxisome // inferred from electronic annotation /// 0005782 // peroxisomal matrix // traceable author statement
0003824 // catalytic activity // inferred from electronic annotation /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from direct assay /// 0004300 // enoyl-CoA hydratase activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation
1769309_at
SPBC1105.11c
Schizosaccharomyces pombe
Mar 13, 2009
SPBC1105.11c.S1
Affymetrix Proprietary Database
SPBC1105.11c
S. pombe SPBC1105.11c /GEN=h3.3 /DEF=histone H3
histone H3 h3.3
h3.3
2539804
0006281 // DNA repair // inferred from electronic annotation /// 0006333 // chromatin assembly or disassembly // non-traceable author statement /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from genetic interaction /// 0006974 // response to DNA damage stimulus // inferred from mutant phenotype /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0030702 // chromatin silencing at centromere // inferred from genetic interaction /// 0030702 // chromatin silencing at centromere // inferred from mutant phenotype
0000786 // nucleosome // inferred from electronic annotation /// 0000788 // nuclear nucleosome // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation
0003677 // DNA binding // non-traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction
1769310_at
SPCC18.05c
Schizosaccharomyces pombe
Mar 13, 2009
SPCC18.05c.S1
Affymetrix Proprietary Database
SPCC18.05c
S. pombe SPCC18.05c /DEF=WD repeat protein
notchless-like protein
SPCC18.05c
2539380
0042254 // ribosome biogenesis // inferred from sequence or structural similarity
0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred from electronic annotation
1769311_at
YDL157C
Saccharomyces cerevisiae
Mar 13, 2009
YDL157C.S1
Affymetrix Proprietary Database
YDL157C
S. cerevisiae YDL157C /GEN=STE7 /DB_XREF=GI:6320044 /SEG=NC_001136:-174233,174589 /DEF=Hypothetical ORF /NOTE=Ydl157cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND]
S000002316
0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation
1769312_at
YER059W
Saccharomyces cerevisiae
Mar 13, 2009
YER059W.S1
Affymetrix Proprietary Database
YER059W
S. cerevisiae YER059W /GEN=PCL6 /DB_XREF=GI:6320901 /SEG=NC_001137:+272622,273884 /DEF=PHO85 cyclin /NOTE=Pcl6p; go_component: cyclin-dependent protein kinase holoenzyme complex [goid GO:0000307] [evidence TAS] [pmid 11602261]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence TAS] [pmid 11602261]; go_process: regulation of glycogen biosynthesis [goid GO:0005979] [evidence IGI] [pmid 11602261]; go_process: regulation of glycogen catabolism [goid GO:0005981] [evidence IGI] [pmid 11602261]
Pho85p cyclin of the Pho80p subfamily; forms the major Glc8p kinase together with Pcl7p and Pho85p; involved in the control of glycogen storage by Pho85p; stabilized by Elongin C binding
PCL6
S000000861
0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005979 // regulation of glycogen biosynthetic process // inferred from genetic interaction /// 0005981 // regulation of glycogen catabolic process // inferred from genetic interaction
0000307 // cyclin-dependent protein kinase holoenzyme complex // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation
0005515 // protein binding // inferred from physical interaction /// 0016538 // cyclin-dependent protein kinase regulator activity // traceable author statement
1769313_at
YGL059W
Saccharomyces cerevisiae
Mar 13, 2009
YGL059W.S1
Affymetrix Proprietary Database
YGL059W
S. cerevisiae YGL059W /GEN=YBP2 /DB_XREF=GI:27808706 /SEG=NC_001139:+392226,393701 /DEF=Hypothetical ORF /NOTE=Ygl059wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 10592175]; go_process: biological_process unknown [goid GO:0000004] [evidence ND]
Mitochondrial protein kinase that negatively regulates activity of the pyruvate dehydrogenase complex by phosphorylating the ser-133 residue of the Pda1p subunit; acts in concert with kinase Pkp1p and phosphatases Ptc5p and Ptc6p
PKP2
S000003027
0015976 // carbon utilization // inferred from genetic interaction /// 0018105 // peptidyl-serine phosphorylation // inferred from mutant phenotype /// 0043086 // negative regulation of catalytic activity // inferred from mutant phenotype
0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation
0004672 // protein kinase activity // inferred from direct assay /// 0004740 // pyruvate dehydrogenase (acetyl-transferring) kinase activity // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation
1769314_at
YDR481C
Saccharomyces cerevisiae
Mar 13, 2009
YDR481C.S1
Affymetrix Proprietary Database
YDR481C
S. cerevisiae YDR481C /GEN=PHO8 /DB_XREF=GI:6320689 /SEG=NC_001136:-1418538,1420238 /DEF=Repressible alkaline phosphatase, a glycoprotein localized to the vacuole; regulated by levels of inorganic phosphate and by a system consisting of Pho4p, Pho9p, Pho80p, Pho81p and Pho85p; dephosphorylates phosphotyrosyl peptides /NOTE=Pho8p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 9412470]; go_function: alkaline phosphatase activity [goid GO:0004035] [evidence IDA,ISS] [pmid 9412470]; go_process: histone dephosphorylation [goid GO:0016576] [evidence IDA] [pmid 9412470]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence IDA] [pmid 9412470]
Repressible alkaline phosphatase, a glycoprotein localized to the vacuole; regulated by levels of inorganic phosphate and by a system consisting of Pho4p, Pho9p, Pho80p, Pho81p and Pho85p; dephosphorylates phosphotyrosyl peptides
PHO8
S000002889
0006470 // protein amino acid dephosphorylation // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation
0000329 // fungal-type vacuole membrane // inferred from direct assay /// 0005773 // vacuole // inferred from electronic annotation /// 0005774 // vacuolar membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation
0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004035 // alkaline phosphatase activity // inferred from direct assay /// 0004035 // alkaline phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
1769315_at
SPBC32H8.10
Schizosaccharomyces pombe
Mar 13, 2009
SPBC32H8.10.S1
Affymetrix Proprietary Database
SPBC32H8.10
S. pombe SPBC32H8.10 /GEN=cdk9 /DEF=cyclin-dependent protein kinase (PMID 12475973)
cyclin-dependent protein kinase Cdk9 (PMID 12475973)
cdk9
2540239
0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006360 // transcription from RNA polymerase I promoter // inferred from genetic interaction /// 0006468 // protein amino acid phosphorylation // inferred from direct assay /// 0006468 // protein amino acid phosphorylation // inferred from electronic annotation /// 0065007 // biological regulation // inferred from electronic annotation
0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // inferred from direct assay /// 0005515 // protein binding // inferred from genetic interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation
1769316_s_at
SPAC750.05c
Schizosaccharomyces pombe
Mar 13, 2009
SPAC750.05c.S1
Affymetrix Proprietary Database
SPAC750.05c
S. pombe SPAC750.05c /DEF=telomeric duplication
S. pombe specific 5Tm protein family /// S. pombe specific 5Tm protein family /// S. pombe specific 5Tm protein family /// S. pombe specific 5Tm protein family
SPAC750.05c /// SPAC977.01 /// SPBC1348.02 /// SPBPB2B2.19c
2541343 2541564 2541576 2543353
0005783 // endoplasmic reticulum // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation
1769317_at
YML113W
Saccharomyces cerevisiae
Mar 13, 2009
YML113W.S1
Affymetrix Proprietary Database
YML113W
S. cerevisiae YML113W /GEN=DAT1 /DB_XREF=GI:6323523 /SEG=NC_001145:+44045,44791 /DEF=datin, an oligo(dA).oligo(dT)-binding protein /NOTE=Dat1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: AT DNA binding [goid GO:0003680] [evidence IDA] [pmid 2670564]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence IMP] [pmid 8248247]
DNA binding protein that recognizes oligo(dA).oligo(dT) tracts; Arg side chain in its N-terminal pentad Gly-Arg-Lys-Pro-Gly repeat is required for DNA-binding; not essential for viability
DAT1
S000004581
0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype
0005634 // nucleus // inferred from direct assay
0003677 // DNA binding // inferred from electronic annotation /// 0003680 // AT DNA binding // inferred from direct assay
1769318_at
SPCC830.06
Schizosaccharomyces pombe
Mar 13, 2009
SPCC830.06.S1
Affymetrix Proprietary Database
SPCC830.06
S. pombe SPCC830.06 /DEF=calcineurin (b subunit) (regulatory subunit) (predicted)
calcineurin regulatory subunit (predicted)
SPCC830.06
2538786
0007165 // signal transduction // inferred by curator /// 0009966 // regulation of signal transduction // inferred by curator
0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from direct assay /// 0005955 // calcineurin complex // inferred from sequence or structural similarity
0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008597 // calcium-dependent protein serine/threonine phosphatase regulator activity // inferred by curator
1769319_at
YIL157C
Saccharomyces cerevisiae
Mar 13, 2009
YIL157C.S1
Affymetrix Proprietary Database
YIL157C
S. cerevisiae YIL157C /GEN=BNR1 /DB_XREF=GI:6322034 /SEG=NC_001141:-46949,47542 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Yil157cp
Mitochondrial inner membrane protein required for assembly of the cytochrome c oxidase complex (complex IV); interacts with complex IV assembly factor Shy1p during the early stages of assembly
COA1
S000001419
0033617 // mitochondrial respiratory chain complex IV assembly // inferred from mutant phenotype /// 0045727 // positive regulation of translation // inferred from physical interaction
0005739 // mitochondrion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031305 // integral to mitochondrial inner membrane // inferred from direct assay /// 0032592 // integral to mitochondrial membrane // inferred from direct assay
1769320_at
YPR003C
Saccharomyces cerevisiae
Mar 13, 2009
YPR003C.S1
Affymetrix Proprietary Database
YPR003C
S. cerevisiae YPR003C /GEN=PDH1 /DB_XREF=GI:6325260 /SEG=NC_001148:-561499,563763 /DEF=Hypothetical ORF /NOTE=Ypr003cp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND]
S000006207
0006810 // transport // inferred from electronic annotation /// 0008272 // sulfate transport // inferred from electronic annotation
0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation
0005215 // transporter activity // inferred from electronic annotation /// 0008271 // secondary active sulfate transmembrane transporter activity // inferred from electronic annotation
1769321_at
YNR074C
Saccharomyces cerevisiae
Mar 13, 2009
YNR074C.S1
Affymetrix Proprietary Database
YNR074C
S. cerevisiae YNR074C /GEN=HXT17 /DB_XREF=GI:6324402 /SEG=NC_001146:-777599,778735 /DEF=putative reductase /NOTE=Ynr074cp; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 11409174]; go_function: oxidoreductase activity, acting on NADH or NADPH, disulfide as acceptor [goid GO:0016654] [evidence ISS] [pmid 11409174]; go_process: response to singlet oxygen [goid GO:0000304] [evidence IMP] [pmid 11409174]
Mitochondrial cell death effector that translocates to the nucleus in response to apoptotic stimuli, homolog of mammalian Apoptosis-Inducing Factor, putative reductase
AIF1
S000005357
0000304 // response to singlet oxygen // inferred from mutant phenotype /// 0006915 // apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation
0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation
0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD binding // inferred from electronic annotation
1769322_s_at
YLR154C-H
Saccharomyces cerevisiae
Mar 13, 2009
YLR154C-H.S1
Affymetrix Proprietary Database
YLR154C-H
S. cerevisiae YLR154C-H /GEN=TAR1 /DB_XREF=GI:33438834 /SEG=NC_001144:-468828,468959 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ylr154c-hp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND]
S000028562 /// S000028564 /// S000028565 /// S000028566
1769323_at
YKL012W
Saccharomyces cerevisiae
Mar 13, 2009
YKL012W.S1
Affymetrix Proprietary Database
YKL012W
S. cerevisiae YKL012W /GEN=PRP40 /DB_XREF=GI:6322840 /SEG=NC_001143:+417953,419704 /DEF=U1 snRNP protein involved in splicing, interacts with the branchpoint-binding protein during the formation of the second commitment complex /NOTE=Prp40p; go_component: commitment complex [goid GO:0000243] [evidence IPI,TAS] [pmid 10072386]; go_component: snRNP U1 [goid GO:0005685] [evidence IPI,TAS] [pmid 10072386]; go_component: snRNP U1 [goid GO:0005685] [evidence IDA] [pmid 11804584]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 8622699]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IDA] [pmid 8622699]
U1 snRNP protein involved in splicing, interacts with the branchpoint-binding protein during the formation of the second commitment complex
PRP40
S000001495
0000398 // nuclear mRNA splicing, via spliceosome // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation
0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from mutant phenotype /// 0005685 // snRNP U1 // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation
0003723 // RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction
1769324_at
YJL147C
Saccharomyces cerevisiae
Mar 13, 2009
YJL147C.S1
Affymetrix Proprietary Database
YJL147C
S. cerevisiae YJL147C /GEN=RPA34 /DB_XREF=GI:6322314 /SEG=NC_001142:-141337,142485 /DEF=Hypothetical ORF /NOTE=Yjl147cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND]
S000003683
0005739 // mitochondrion // inferred from direct assay
1769325_at
YDL216C
Saccharomyces cerevisiae
Mar 13, 2009
YDL216C.S1
Affymetrix Proprietary Database
YDL216C
S. cerevisiae YDL216C /GEN=RRI1 /DB_XREF=GI:6319985 /SEG=NC_001136:-68998,70365 /DEF=subunit of COP9 signalosome (CSN) /NOTE=Rri1p; go_component: signalosome complex [goid GO:0008180] [evidence TAS] [pmid 12186635]; go_component: signalosome complex [goid GO:0008180] [evidence IDA] [pmid 12446563]; go_function: metalloendopeptidase activity [goid GO:0004222] [evidence IMP] [pmid 12183637]; go_process: adaptation to pheromone during conjugation with cellular fusion [goid GO:0000754] [evidence IMP] [pmid 12446563]; go_process: protein deneddylation [goid GO:0000338] [evidence IMP] [pmid 12446563]
Catalytic subunit of the COP9 signalosome (CSN) complex that acts as an isopeptidase in cleaving the ubiquitin-like protein Nedd8 from SCF ubiquitin ligases; metalloendopeptidase involved in the adaptation to pheromone signaling
RRI1
S000002375
0000338 // protein deneddylation // inferred from mutant phenotype /// 0000754 // adaptation to pheromone during conjugation with cellular fusion // inferred from mutant phenotype
0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0008180 // signalosome // inferred from direct assay /// 0008180 // signalosome // inferred from electronic annotation /// 0008180 // signalosome // traceable author statement
0004222 // metalloendopeptidase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
1769326_at
SPBC1105.05
Schizosaccharomyces pombe
Mar 13, 2009
SPBC1105.05.S1
Affymetrix Proprietary Database
SPBC1105.05
S. pombe SPBC1105.05 /GEN=exg1 /DEF=glucan 1,3-beta-glucosidase III precursor
glucan 1,3-beta-glucosidase I/II precursor
exg1
2539993
0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0007047 // cell wall organization // inferred from sequence or structural similarity /// 0007047 // cell wall organization // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0034637 // cellular carbohydrate biosynthetic process // inferred from sequence or structural similarity
0005576 // extracellular region // inferred from electronic annotation /// 0009277 // fungal-type cell wall // inferred from sequence or structural similarity
0003824 // catalytic activity // inferred from electronic annotation /// 0004338 // glucan 1,3-beta-glucosidase activity // inferred from sequence or structural similarity /// 0004338 // glucan 1,3-beta-glucosidase activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation
1769327_at
SPCC1840.01c
Schizosaccharomyces pombe
Mar 13, 2009
SPCC1840.01c.S1
Affymetrix Proprietary Database
SPCC1840.01c
S. pombe SPCC1840.01c /GEN=mog1 /DEF=GTPase (PMID 11290708)
Ran GTPase binding protein Mog1 (PMID 11290708)
mog1
2539036
0000216 // M/G1 transition of mitotic cell cycle // inferred from mutant phenotype /// 0006606 // protein import into nucleus // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from genetic interaction /// 0015031 // protein transport // inferred from electronic annotation /// 0016973 // poly(A)+ mRNA export from nucleus // inferred from mutant phenotype /// 0051028 // mRNA transport // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation
0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay
0008536 // Ran GTPase binding // inferred from sequence or structural similarity
Total number of rows: 10928 Table truncated, full table size 13827 Kbytes .
Supplementary data files not provided