NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL2529 Query DataSets for GPL2529
Status Public on Jun 13, 2005
Title [Yeast_2] Affymetrix Yeast Genome 2.0 Array
Technology type in situ oligonucleotide
Distribution commercial
Organisms Schizosaccharomyces pombe; Saccharomyces cerevisiae
Manufacturer Affymetrix
Manufacture protocol The sequence information for this array was selected from public data sources GenBank® (May 2004) and Sanger Center (June 2004) for the S. cerevisiae and S. pombe genomes, respectively. Probe sets on the array include 11 oligonucleotide pairs to detect each transcript.
Catalog number 900553
Support silicon
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

The GeneChip® Yeast Genome 2.0 Array contains probe sets to detect transcripts from both Saccharomyces cerevisiae and Schizosaccharomyces pombe, which are the two most commonly studied species of yeast. Providing comprehensive coverage of both species, the GeneChip Yeast Genome 2.0 Array includes approximately 5,744 probe sets for 5,841 of the 5,845 genes present in S. cerevisiae and 5,021 probe sets for all 5,031 genes present in S. pombe
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=yeast-20
http://www.affymetrix.com/analysis/index.affx
Submission date Jun 09, 2005
Last update date Feb 21, 2017
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (4299) GSM60823, GSM60824, GSM94606, GSM94608, GSM94609, GSM94610 
Series (316)
GSE2806 Transcriptional profile of an acs2Ts1 mutant yeast
GSE4136 Yeast Genomic Expression Patterns in Response to Low-Shear Modeled Microgravity
GSE4295 Sugar stress during fermentation (baker's yeast)
Relations
Alternative to GPL9671 (Alternative CDF)
Alternative to GPL13150 (Alternative CDF)

Data table header descriptions
ID Affymetrix Probe Set ID
ORF Entrez Gene locus
SPOT_ID
ORGANISM Species Scientific Name
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Representative Public ID The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Sequence Source The database from which the sequence used to design this probe set was taken.
Transcript ID(Array Design)
Target Description GenBank description associated with the representative public identifier. Blank for some probe sets.
Gene Title Title of Gene represented by the probe set.
Gene Symbol A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID Entrez Gene database UID
SGD accession number SGD: Saccharomyces Genome Database
Gene Ontology Biological Process Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".

Data table
ID ORF SPOT_ID ORGANISM Annotation Date Representative Public ID Sequence Source Transcript ID(Array Design) Target Description Gene Title Gene Symbol ENTREZ_GENE_ID SGD accession number Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function
1769308_at YKR009C Saccharomyces cerevisiae Mar 13, 2009 YKR009C.S1 Affymetrix Proprietary Database YKR009C S. cerevisiae YKR009C /GEN=FOX2 /DB_XREF=GI:6322861 /SEG=NC_001143:-453995,456697 /DEF=Multifunctional enzyme of the peroxisomal fatty acid beta-oxidation pathway; has 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase activities /NOTE=Fox2p; go_component: peroxisomal matrix [goid GO:0005782] [evidence TAS]; go_function: 3-hydroxyacyl-CoA dehydrogenase activity [goid GO:0003857] [evidence TAS]; go_function: enoyl-CoA hydratase activity [goid GO:0004300] [evidence TAS]; go_process: fatty acid beta-oxidation [goid GO:0006635] [evidence TAS] Multifunctional enzyme of the peroxisomal fatty acid beta-oxidation pathway; has 3-hydroxyacyl-CoA dehydrogenase and enoyl-CoA hydratase activities FOX2 S000001717 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation /// 0006635 // fatty acid beta-oxidation // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005777 // peroxisome // inferred from electronic annotation /// 0005782 // peroxisomal matrix // traceable author statement 0003824 // catalytic activity // inferred from electronic annotation /// 0003857 // 3-hydroxyacyl-CoA dehydrogenase activity // inferred from direct assay /// 0004300 // enoyl-CoA hydratase activity // inferred from direct assay /// 0005488 // binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0016853 // isomerase activity // inferred from electronic annotation
1769309_at SPBC1105.11c Schizosaccharomyces pombe Mar 13, 2009 SPBC1105.11c.S1 Affymetrix Proprietary Database SPBC1105.11c S. pombe SPBC1105.11c /GEN=h3.3 /DEF=histone H3 histone H3 h3.3 h3.3 2539804 0006281 // DNA repair // inferred from electronic annotation /// 0006333 // chromatin assembly or disassembly // non-traceable author statement /// 0006334 // nucleosome assembly // inferred from electronic annotation /// 0006974 // response to DNA damage stimulus // inferred from genetic interaction /// 0006974 // response to DNA damage stimulus // inferred from mutant phenotype /// 0006974 // response to DNA damage stimulus // inferred from electronic annotation /// 0030702 // chromatin silencing at centromere // inferred from genetic interaction /// 0030702 // chromatin silencing at centromere // inferred from mutant phenotype 0000786 // nucleosome // inferred from electronic annotation /// 0000788 // nuclear nucleosome // non-traceable author statement /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005694 // chromosome // inferred from electronic annotation 0003677 // DNA binding // non-traceable author statement /// 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction
1769310_at SPCC18.05c Schizosaccharomyces pombe Mar 13, 2009 SPCC18.05c.S1 Affymetrix Proprietary Database SPCC18.05c S. pombe SPCC18.05c /DEF=WD repeat protein notchless-like protein SPCC18.05c 2539380 0042254 // ribosome biogenesis // inferred from sequence or structural similarity 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred from electronic annotation
1769311_at YDL157C Saccharomyces cerevisiae Mar 13, 2009 YDL157C.S1 Affymetrix Proprietary Database YDL157C S. cerevisiae YDL157C /GEN=STE7 /DB_XREF=GI:6320044 /SEG=NC_001136:-174233,174589 /DEF=Hypothetical ORF /NOTE=Ydl157cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] S000002316 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation
1769312_at YER059W Saccharomyces cerevisiae Mar 13, 2009 YER059W.S1 Affymetrix Proprietary Database YER059W S. cerevisiae YER059W /GEN=PCL6 /DB_XREF=GI:6320901 /SEG=NC_001137:+272622,273884 /DEF=PHO85 cyclin /NOTE=Pcl6p; go_component: cyclin-dependent protein kinase holoenzyme complex [goid GO:0000307] [evidence TAS] [pmid 11602261]; go_function: cyclin-dependent protein kinase regulator activity [goid GO:0016538] [evidence TAS] [pmid 11602261]; go_process: regulation of glycogen biosynthesis [goid GO:0005979] [evidence IGI] [pmid 11602261]; go_process: regulation of glycogen catabolism [goid GO:0005981] [evidence IGI] [pmid 11602261] Pho85p cyclin of the Pho80p subfamily; forms the major Glc8p kinase together with Pcl7p and Pho85p; involved in the control of glycogen storage by Pho85p; stabilized by Elongin C binding PCL6 S000000861 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0005977 // glycogen metabolic process // inferred from electronic annotation /// 0005979 // regulation of glycogen biosynthetic process // inferred from genetic interaction /// 0005981 // regulation of glycogen catabolic process // inferred from genetic interaction 0000307 // cyclin-dependent protein kinase holoenzyme complex // traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0005515 // protein binding // inferred from physical interaction /// 0016538 // cyclin-dependent protein kinase regulator activity // traceable author statement
1769313_at YGL059W Saccharomyces cerevisiae Mar 13, 2009 YGL059W.S1 Affymetrix Proprietary Database YGL059W S. cerevisiae YGL059W /GEN=YBP2 /DB_XREF=GI:27808706 /SEG=NC_001139:+392226,393701 /DEF=Hypothetical ORF /NOTE=Ygl059wp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: protein kinase activity [goid GO:0004672] [evidence ISS] [pmid 10592175]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] Mitochondrial protein kinase that negatively regulates activity of the pyruvate dehydrogenase complex by phosphorylating the ser-133 residue of the Pda1p subunit; acts in concert with kinase Pkp1p and phosphatases Ptc5p and Ptc6p PKP2 S000003027 0015976 // carbon utilization // inferred from genetic interaction /// 0018105 // peptidyl-serine phosphorylation // inferred from mutant phenotype /// 0043086 // negative regulation of catalytic activity // inferred from mutant phenotype 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation 0004672 // protein kinase activity // inferred from direct assay /// 0004740 // pyruvate dehydrogenase (acetyl-transferring) kinase activity // inferred from mutant phenotype /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation
1769314_at YDR481C Saccharomyces cerevisiae Mar 13, 2009 YDR481C.S1 Affymetrix Proprietary Database YDR481C S. cerevisiae YDR481C /GEN=PHO8 /DB_XREF=GI:6320689 /SEG=NC_001136:-1418538,1420238 /DEF=Repressible alkaline phosphatase, a glycoprotein localized to the vacuole; regulated by levels of inorganic phosphate and by a system consisting of Pho4p, Pho9p, Pho80p, Pho81p and Pho85p; dephosphorylates phosphotyrosyl peptides /NOTE=Pho8p; go_component: vacuolar membrane (sensu Fungi) [goid GO:0000329] [evidence IDA] [pmid 9412470]; go_function: alkaline phosphatase activity [goid GO:0004035] [evidence IDA,ISS] [pmid 9412470]; go_process: histone dephosphorylation [goid GO:0016576] [evidence IDA] [pmid 9412470]; go_process: protein amino acid dephosphorylation [goid GO:0006470] [evidence IDA] [pmid 9412470] Repressible alkaline phosphatase, a glycoprotein localized to the vacuole; regulated by levels of inorganic phosphate and by a system consisting of Pho4p, Pho9p, Pho80p, Pho81p and Pho85p; dephosphorylates phosphotyrosyl peptides PHO8 S000002889 0006470 // protein amino acid dephosphorylation // inferred from direct assay /// 0008152 // metabolic process // inferred from electronic annotation 0000329 // fungal-type vacuole membrane // inferred from direct assay /// 0005773 // vacuole // inferred from electronic annotation /// 0005774 // vacuolar membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004035 // alkaline phosphatase activity // inferred from direct assay /// 0004035 // alkaline phosphatase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
1769315_at SPBC32H8.10 Schizosaccharomyces pombe Mar 13, 2009 SPBC32H8.10.S1 Affymetrix Proprietary Database SPBC32H8.10 S. pombe SPBC32H8.10 /GEN=cdk9 /DEF=cyclin-dependent protein kinase (PMID 12475973) cyclin-dependent protein kinase Cdk9 (PMID 12475973) cdk9 2540239 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006360 // transcription from RNA polymerase I promoter // inferred from genetic interaction /// 0006468 // protein amino acid phosphorylation // inferred from direct assay /// 0006468 // protein amino acid phosphorylation // inferred from electronic annotation /// 0065007 // biological regulation // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // inferred from direct assay /// 0004674 // protein serine/threonine kinase activity // inferred from electronic annotation /// 0004693 // cyclin-dependent protein kinase activity // inferred from direct assay /// 0005515 // protein binding // inferred from genetic interaction /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from direct assay /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation
1769316_s_at SPAC750.05c Schizosaccharomyces pombe Mar 13, 2009 SPAC750.05c.S1 Affymetrix Proprietary Database SPAC750.05c S. pombe SPAC750.05c /DEF=telomeric duplication S. pombe specific 5Tm protein family /// S. pombe specific 5Tm protein family /// S. pombe specific 5Tm protein family /// S. pombe specific 5Tm protein family SPAC750.05c /// SPAC977.01 /// SPBC1348.02 /// SPBPB2B2.19c 2541343 2541564 2541576 2543353 0005783 // endoplasmic reticulum // inferred from direct assay /// 0009986 // cell surface // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation
1769317_at YML113W Saccharomyces cerevisiae Mar 13, 2009 YML113W.S1 Affymetrix Proprietary Database YML113W S. cerevisiae YML113W /GEN=DAT1 /DB_XREF=GI:6323523 /SEG=NC_001145:+44045,44791 /DEF=datin, an oligo(dA).oligo(dT)-binding protein /NOTE=Dat1p; go_component: nucleus [goid GO:0005634] [evidence IDA] [pmid 14562095]; go_function: AT DNA binding [goid GO:0003680] [evidence IDA] [pmid 2670564]; go_process: negative regulation of transcription from Pol II promoter [goid GO:0000122] [evidence IMP] [pmid 8248247] DNA binding protein that recognizes oligo(dA).oligo(dT) tracts; Arg side chain in its N-terminal pentad Gly-Arg-Lys-Pro-Gly repeat is required for DNA-binding; not essential for viability DAT1 S000004581 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype 0005634 // nucleus // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0003680 // AT DNA binding // inferred from direct assay
1769318_at SPCC830.06 Schizosaccharomyces pombe Mar 13, 2009 SPCC830.06.S1 Affymetrix Proprietary Database SPCC830.06 S. pombe SPCC830.06 /DEF=calcineurin (b subunit) (regulatory subunit) (predicted) calcineurin regulatory subunit (predicted) SPCC830.06 2538786 0007165 // signal transduction // inferred by curator /// 0009966 // regulation of signal transduction // inferred by curator 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from direct assay /// 0005955 // calcineurin complex // inferred from sequence or structural similarity 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008597 // calcium-dependent protein serine/threonine phosphatase regulator activity // inferred by curator
1769319_at YIL157C Saccharomyces cerevisiae Mar 13, 2009 YIL157C.S1 Affymetrix Proprietary Database YIL157C S. cerevisiae YIL157C /GEN=BNR1 /DB_XREF=GI:6322034 /SEG=NC_001141:-46949,47542 /DEF=The authentic, non-tagged protein was localized to the mitochondria /NOTE=Yil157cp Mitochondrial inner membrane protein required for assembly of the cytochrome c oxidase complex (complex IV); interacts with complex IV assembly factor Shy1p during the early stages of assembly COA1 S000001419 0033617 // mitochondrial respiratory chain complex IV assembly // inferred from mutant phenotype /// 0045727 // positive regulation of translation // inferred from physical interaction 0005739 // mitochondrion // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0031305 // integral to mitochondrial inner membrane // inferred from direct assay /// 0032592 // integral to mitochondrial membrane // inferred from direct assay
1769320_at YPR003C Saccharomyces cerevisiae Mar 13, 2009 YPR003C.S1 Affymetrix Proprietary Database YPR003C S. cerevisiae YPR003C /GEN=PDH1 /DB_XREF=GI:6325260 /SEG=NC_001148:-561499,563763 /DEF=Hypothetical ORF /NOTE=Ypr003cp; go_component: endoplasmic reticulum [goid GO:0005783] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] S000006207 0006810 // transport // inferred from electronic annotation /// 0008272 // sulfate transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0005215 // transporter activity // inferred from electronic annotation /// 0008271 // secondary active sulfate transmembrane transporter activity // inferred from electronic annotation
1769321_at YNR074C Saccharomyces cerevisiae Mar 13, 2009 YNR074C.S1 Affymetrix Proprietary Database YNR074C S. cerevisiae YNR074C /GEN=HXT17 /DB_XREF=GI:6324402 /SEG=NC_001146:-777599,778735 /DEF=putative reductase /NOTE=Ynr074cp; go_component: plasma membrane [goid GO:0005886] [evidence ISS] [pmid 11409174]; go_function: oxidoreductase activity, acting on NADH or NADPH, disulfide as acceptor [goid GO:0016654] [evidence ISS] [pmid 11409174]; go_process: response to singlet oxygen [goid GO:0000304] [evidence IMP] [pmid 11409174] Mitochondrial cell death effector that translocates to the nucleus in response to apoptotic stimuli, homolog of mammalian Apoptosis-Inducing Factor, putative reductase AIF1 S000005357 0000304 // response to singlet oxygen // inferred from mutant phenotype /// 0006915 // apoptosis // inferred from electronic annotation /// 0043065 // positive regulation of apoptosis // inferred from mutant phenotype /// 0055114 // oxidation reduction // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0050660 // FAD binding // inferred from electronic annotation
1769322_s_at YLR154C-H Saccharomyces cerevisiae Mar 13, 2009 YLR154C-H.S1 Affymetrix Proprietary Database YLR154C-H S. cerevisiae YLR154C-H /GEN=TAR1 /DB_XREF=GI:33438834 /SEG=NC_001144:-468828,468959 /DEF=Identified by fungal homology and RT-PCR /NOTE=Ylr154c-hp; go_component: cellular_component unknown [goid GO:0008372] [evidence ND]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] S000028562 /// S000028564 /// S000028565 /// S000028566
1769323_at YKL012W Saccharomyces cerevisiae Mar 13, 2009 YKL012W.S1 Affymetrix Proprietary Database YKL012W S. cerevisiae YKL012W /GEN=PRP40 /DB_XREF=GI:6322840 /SEG=NC_001143:+417953,419704 /DEF=U1 snRNP protein involved in splicing, interacts with the branchpoint-binding protein during the formation of the second commitment complex /NOTE=Prp40p; go_component: commitment complex [goid GO:0000243] [evidence IPI,TAS] [pmid 10072386]; go_component: snRNP U1 [goid GO:0005685] [evidence IPI,TAS] [pmid 10072386]; go_component: snRNP U1 [goid GO:0005685] [evidence IDA] [pmid 11804584]; go_function: RNA binding [goid GO:0003723] [evidence IDA] [pmid 8622699]; go_process: nuclear mRNA splicing, via spliceosome [goid GO:0000398] [evidence IDA] [pmid 8622699] U1 snRNP protein involved in splicing, interacts with the branchpoint-binding protein during the formation of the second commitment complex PRP40 S000001495 0000398 // nuclear mRNA splicing, via spliceosome // inferred from direct assay /// 0006397 // mRNA processing // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from mutant phenotype /// 0005685 // snRNP U1 // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0003723 // RNA binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction
1769324_at YJL147C Saccharomyces cerevisiae Mar 13, 2009 YJL147C.S1 Affymetrix Proprietary Database YJL147C S. cerevisiae YJL147C /GEN=RPA34 /DB_XREF=GI:6322314 /SEG=NC_001142:-141337,142485 /DEF=Hypothetical ORF /NOTE=Yjl147cp; go_component: mitochondrion [goid GO:0005739] [evidence IDA] [pmid 14562095]; go_function: molecular_function unknown [goid GO:0005554] [evidence ND]; go_process: biological_process unknown [goid GO:0000004] [evidence ND] S000003683 0005739 // mitochondrion // inferred from direct assay
1769325_at YDL216C Saccharomyces cerevisiae Mar 13, 2009 YDL216C.S1 Affymetrix Proprietary Database YDL216C S. cerevisiae YDL216C /GEN=RRI1 /DB_XREF=GI:6319985 /SEG=NC_001136:-68998,70365 /DEF=subunit of COP9 signalosome (CSN) /NOTE=Rri1p; go_component: signalosome complex [goid GO:0008180] [evidence TAS] [pmid 12186635]; go_component: signalosome complex [goid GO:0008180] [evidence IDA] [pmid 12446563]; go_function: metalloendopeptidase activity [goid GO:0004222] [evidence IMP] [pmid 12183637]; go_process: adaptation to pheromone during conjugation with cellular fusion [goid GO:0000754] [evidence IMP] [pmid 12446563]; go_process: protein deneddylation [goid GO:0000338] [evidence IMP] [pmid 12446563] Catalytic subunit of the COP9 signalosome (CSN) complex that acts as an isopeptidase in cleaving the ubiquitin-like protein Nedd8 from SCF ubiquitin ligases; metalloendopeptidase involved in the adaptation to pheromone signaling RRI1 S000002375 0000338 // protein deneddylation // inferred from mutant phenotype /// 0000754 // adaptation to pheromone during conjugation with cellular fusion // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0008180 // signalosome // inferred from direct assay /// 0008180 // signalosome // inferred from electronic annotation /// 0008180 // signalosome // traceable author statement 0004222 // metalloendopeptidase activity // inferred from mutant phenotype /// 0005515 // protein binding // inferred from physical interaction /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
1769326_at SPBC1105.05 Schizosaccharomyces pombe Mar 13, 2009 SPBC1105.05.S1 Affymetrix Proprietary Database SPBC1105.05 S. pombe SPBC1105.05 /GEN=exg1 /DEF=glucan 1,3-beta-glucosidase III precursor glucan 1,3-beta-glucosidase I/II precursor exg1 2539993 0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0007047 // cell wall organization // inferred from sequence or structural similarity /// 0007047 // cell wall organization // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0034637 // cellular carbohydrate biosynthetic process // inferred from sequence or structural similarity 0005576 // extracellular region // inferred from electronic annotation /// 0009277 // fungal-type cell wall // inferred from sequence or structural similarity 0003824 // catalytic activity // inferred from electronic annotation /// 0004338 // glucan 1,3-beta-glucosidase activity // inferred from sequence or structural similarity /// 0004338 // glucan 1,3-beta-glucosidase activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation
1769327_at SPCC1840.01c Schizosaccharomyces pombe Mar 13, 2009 SPCC1840.01c.S1 Affymetrix Proprietary Database SPCC1840.01c S. pombe SPCC1840.01c /GEN=mog1 /DEF=GTPase (PMID 11290708) Ran GTPase binding protein Mog1 (PMID 11290708) mog1 2539036 0000216 // M/G1 transition of mitotic cell cycle // inferred from mutant phenotype /// 0006606 // protein import into nucleus // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0007049 // cell cycle // inferred from electronic annotation /// 0007067 // mitosis // inferred from electronic annotation /// 0007264 // small GTPase mediated signal transduction // inferred from genetic interaction /// 0015031 // protein transport // inferred from electronic annotation /// 0016973 // poly(A)+ mRNA export from nucleus // inferred from mutant phenotype /// 0051028 // mRNA transport // inferred from electronic annotation /// 0051301 // cell division // inferred from electronic annotation 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005829 // cytosol // inferred from direct assay 0008536 // Ran GTPase binding // inferred from sequence or structural similarity

Total number of rows: 10928

Table truncated, full table size 13827 Kbytes.






Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap