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Platform GPL25345 Query DataSets for GPL25345
Status Public on Jul 19, 2018
Title Agilent-031104 mpi_uhordei_01 031103
Technology type in situ oligonucleotide
Distribution commercial
Organism Ustilago hordei
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Ustilago hordei 3' expression array version 1.0

Arrays of this design have barcodes that begin with 16031104 or 2531104.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Jul 18, 2018
Last update date Jul 19, 2018
Contact name Urs Lahrmann
Organization name Fraunhofer ITEM
Department Project Group Personalized Tumor Therapy
Street address Am Biopark 9
City Regensburg
ZIP/Postal code 93053
Country Germany
 
Samples (18) GSM3291026, GSM3291027, GSM3291028, GSM3291029, GSM3291030, GSM3291031 
Series (1)
GSE117325 Mining the effector repertoire of the biotrophic fungal pathogen Ustilago hordei during host and non-host infection

Data table header descriptions
ID
COL
ROW
NAME
SPOT_ID
CONTROL_TYPE
ACCESSION_STRING
CHROMOSOMAL_LOCATION
SEQUENCE

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 CUST_1218_PI425798068 CUST_1218_PI425798068 FALSE BX647378 unmapped AGAACGATAACTACCACTATCAGCTTTGCCTCATGCAAAAGTACACCAAGCAGAGCTGTC
5 96 156 CUST_3638_PI425798068 CUST_3638_PI425798068 FALSE U69274 unmapped TTCACAACAATCTCATCCGAAAAGCTGCCGTCGTCTGTGATCCCAAAATGCGATGATTTG
6 96 154 CUST_1229_PI425798068 CUST_1229_PI425798068 FALSE BX648295 unmapped AACATCTTCGATCCTAGCGAGAATGAACACTTTATGGTGTGGATGCGCATTGCAGGTCTT
7 96 152 CUST_7124_PI425798068 CUST_7124_PI425798068 FALSE BX648172 unmapped GAAGTATCTGAATCAGACACAAGACAAGGGTTTGAGGCTTGGTGGTGGAAACAAAGATGA
8 96 150 CUST_36_PI425798068 CUST_36_PI425798068 FALSE AB107353 unmapped TTCATCTTTGTGAGAAAGACATATGGAAGCAAGACATGGTACGAGATCGTGGGTCAGACC
9 96 148 CUST_1410_PI425798068 CUST_1410_PI425798068 FALSE BX537816 unmapped GATGTTAAGCTAAGAAATCGTTGGCTGACTGTTTGGTCTTTGGAATGGGCTCAACCATAA
10 96 146 CUST_6925_PI425798068 CUST_6925_PI425798068 FALSE M96739 unmapped TCATAACCTACACATTGATATTGATTGTGCCAAGCTACCCCTGAATGGAGTGTCCACAGA
11 96 144 CUST_1534_PI425798068 CUST_1534_PI425798068 FALSE NM_005100 unmapped ATCCACTCATCAACAAATGGATGCAGAACCTCTACTGGAACAACCCTGCTTTCAAGGACA
12 96 142 CUST_5596_PI425798068 CUST_5596_PI425798068 FALSE AK125860 unmapped ACAGATCAAGAGAATCTTGAAACTTGCATCGACAGAGCACATGCGAGAGCAAAACAGCTG
13 96 140 CUST_2379_PI425798068 CUST_2379_PI425798068 FALSE AB033112 unmapped AACAGCTATGTCTACAAGTACCTGATCAGGATGTTGAACATTGCAGCTGAAGGAGGTGCT
14 96 138 CUST_4678_PI425798068 CUST_4678_PI425798068 FALSE AB032992 unmapped ATAGAAGGATTTGAAGGTCAGGCTTTAGGATTGTTGACCCCTGTTAGCATAGCCAGTTGA
15 96 136 CUST_140_PI425798068 CUST_140_PI425798068 FALSE AB023200 unmapped AAAGGTGTAGAAGGGTTGCCGATGAGCATCACTAAGAACAAACGTCGGTCTTTGCAAGTT
16 96 134 CUST_2454_PI425798068 CUST_2454_PI425798068 FALSE BX647546 unmapped TGTTGATTGAGGAAGTTTGTAAGTTGGTTACCAGGGTGTTCTTCCTTAATAAGGCAGCGA
17 96 132 CUST_1351_PI425798068 CUST_1351_PI425798068 FALSE AK024293 unmapped AGGGACGACATTACAGTCAACGTCATCCTCTTCAACTCGCCCACTTGCATTCCTGCGCAG
18 96 130 CUST_5447_PI425798068 CUST_5447_PI425798068 FALSE NM_016201 unmapped AACAGCAATTTGCTCAGCCGATCCAACAGCAGCAGCACTACGTCGCTCAGCGATGGGATC
19 96 128 CUST_3076_PI425798068 CUST_3076_PI425798068 FALSE AK091571 unmapped CTCAACCGTCTTGCTCAAAAGGAGGGTCTCCTCCGCAACGTCTGGAACGCCCAGAAGTAA
20 96 126 CUST_191_PI425798068 CUST_191_PI425798068 FALSE AY633572 unmapped TTGGAAGATCCAAGTATCATGTTCTTTAGCGACTTGGCACCAGTAGCAAGTAGTACGCCT

Total number of rows: 15744

Table truncated, full table size 2099 Kbytes.




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Supplementary data files not provided

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