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Status
Public on Jul 19, 2018
Title
Agilent-031104 mpi_uhordei_01 031103
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Ustilago hordei
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Ustilago hordei 3' expression array version 1.0 Arrays of this design have barcodes that begin with 16031104 or 2531104. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Jul 18, 2018
Last update date
Jul 19, 2018
Contact name
Urs Lahrmann
Organization name
Fraunhofer ITEM
Department
Project Group Personalized Tumor Therapy
Street address
Am Biopark 9
City
Regensburg
ZIP/Postal code
93053
Country
Germany
Samples (18)
GSM3291026 , GSM3291027 , GSM3291028 , GSM3291029 , GSM3291030 , GSM3291031
GSM3291032 ,
GSM3291033 ,
GSM3291034 ,
GSM3291035 ,
GSM3291036 ,
GSM3291037 ,
GSM3291038 ,
GSM3291039 ,
GSM3291040 ,
GSM3291041 ,
GSM3291042 ,
GSM3291043
Series (1)
GSE117325
Mining the effector repertoire of the biotrophic fungal pathogen Ustilago hordei during host and non-host infection
Data table header descriptions
ID
COL
ROW
NAME
SPOT_ID
CONTROL_TYPE
ACCESSION_STRING
CHROMOSOMAL_LOCATION
SEQUENCE
Data table
ID
COL
ROW
NAME
SPOT_ID
CONTROL_TYPE
ACCESSION_STRING
CHROMOSOMAL_LOCATION
SEQUENCE
1
96
164
GE_BrightCorner
GE_BrightCorner
pos
2
96
162
DarkCorner
DarkCorner
pos
3
96
160
DarkCorner
DarkCorner
pos
4
96
158
CUST_1218_PI425798068
CUST_1218_PI425798068
FALSE
BX647378
unmapped
AGAACGATAACTACCACTATCAGCTTTGCCTCATGCAAAAGTACACCAAGCAGAGCTGTC
5
96
156
CUST_3638_PI425798068
CUST_3638_PI425798068
FALSE
U69274
unmapped
TTCACAACAATCTCATCCGAAAAGCTGCCGTCGTCTGTGATCCCAAAATGCGATGATTTG
6
96
154
CUST_1229_PI425798068
CUST_1229_PI425798068
FALSE
BX648295
unmapped
AACATCTTCGATCCTAGCGAGAATGAACACTTTATGGTGTGGATGCGCATTGCAGGTCTT
7
96
152
CUST_7124_PI425798068
CUST_7124_PI425798068
FALSE
BX648172
unmapped
GAAGTATCTGAATCAGACACAAGACAAGGGTTTGAGGCTTGGTGGTGGAAACAAAGATGA
8
96
150
CUST_36_PI425798068
CUST_36_PI425798068
FALSE
AB107353
unmapped
TTCATCTTTGTGAGAAAGACATATGGAAGCAAGACATGGTACGAGATCGTGGGTCAGACC
9
96
148
CUST_1410_PI425798068
CUST_1410_PI425798068
FALSE
BX537816
unmapped
GATGTTAAGCTAAGAAATCGTTGGCTGACTGTTTGGTCTTTGGAATGGGCTCAACCATAA
10
96
146
CUST_6925_PI425798068
CUST_6925_PI425798068
FALSE
M96739
unmapped
TCATAACCTACACATTGATATTGATTGTGCCAAGCTACCCCTGAATGGAGTGTCCACAGA
11
96
144
CUST_1534_PI425798068
CUST_1534_PI425798068
FALSE
NM_005100
unmapped
ATCCACTCATCAACAAATGGATGCAGAACCTCTACTGGAACAACCCTGCTTTCAAGGACA
12
96
142
CUST_5596_PI425798068
CUST_5596_PI425798068
FALSE
AK125860
unmapped
ACAGATCAAGAGAATCTTGAAACTTGCATCGACAGAGCACATGCGAGAGCAAAACAGCTG
13
96
140
CUST_2379_PI425798068
CUST_2379_PI425798068
FALSE
AB033112
unmapped
AACAGCTATGTCTACAAGTACCTGATCAGGATGTTGAACATTGCAGCTGAAGGAGGTGCT
14
96
138
CUST_4678_PI425798068
CUST_4678_PI425798068
FALSE
AB032992
unmapped
ATAGAAGGATTTGAAGGTCAGGCTTTAGGATTGTTGACCCCTGTTAGCATAGCCAGTTGA
15
96
136
CUST_140_PI425798068
CUST_140_PI425798068
FALSE
AB023200
unmapped
AAAGGTGTAGAAGGGTTGCCGATGAGCATCACTAAGAACAAACGTCGGTCTTTGCAAGTT
16
96
134
CUST_2454_PI425798068
CUST_2454_PI425798068
FALSE
BX647546
unmapped
TGTTGATTGAGGAAGTTTGTAAGTTGGTTACCAGGGTGTTCTTCCTTAATAAGGCAGCGA
17
96
132
CUST_1351_PI425798068
CUST_1351_PI425798068
FALSE
AK024293
unmapped
AGGGACGACATTACAGTCAACGTCATCCTCTTCAACTCGCCCACTTGCATTCCTGCGCAG
18
96
130
CUST_5447_PI425798068
CUST_5447_PI425798068
FALSE
NM_016201
unmapped
AACAGCAATTTGCTCAGCCGATCCAACAGCAGCAGCACTACGTCGCTCAGCGATGGGATC
19
96
128
CUST_3076_PI425798068
CUST_3076_PI425798068
FALSE
AK091571
unmapped
CTCAACCGTCTTGCTCAAAAGGAGGGTCTCCTCCGCAACGTCTGGAACGCCCAGAAGTAA
20
96
126
CUST_191_PI425798068
CUST_191_PI425798068
FALSE
AY633572
unmapped
TTGGAAGATCCAAGTATCATGTTCTTTAGCGACTTGGCACCAGTAGCAAGTAGTACGCCT
Total number of rows: 15744 Table truncated, full table size 2099 Kbytes .
Supplementary data files not provided