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Status
Public on Feb 25, 2003
Title
Caltech 16K Oligo Mouse Array
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Mus musculus
Description
The 16K mouse Oligo probes used in this microarray were designed and manufactured by different companies. A total of 13,327 probes were designed and manufactured by Operon Technologies, Inc. while 2,304 probes were designed by Compugen and manufactured by Sigma Genosys. Probes made by Operon are 70mers in length while probes made by Compugen and Sigma are 65mers in length. The probes were inkjet-printed on the array by Agilent Technologies (Palo Alto, CA).
Citation(s)
19238203
Submission date
Feb 24, 2003
Last update date
Aug 29, 2019
Contact name
Sangdun Choi
E-mail(s)
schoi@caltech.edu
Phone
626-395-8732
Fax
626-796-7066
Organization name
California Institute of Technology
Department
Biology
Lab
Simon Lab
Street address
1200 E. California Blvd
City
Pasadena
State/province
CA
ZIP/Postal code
91125
Country
USA
Samples (379)
GSM4619 , GSM4620 , GSM4621 , GSM4622 , GSM4623 , GSM4624
GSM4625 ,
GSM4626 ,
GSM4627 ,
GSM4628 ,
GSM4629 ,
GSM4630 ,
GSM4631 ,
GSM4632 ,
GSM4633 ,
GSM4634 ,
GSM4660 ,
GSM4665 ,
GSM4670 ,
GSM15078 ,
GSM15079 ,
GSM15080 ,
GSM15081 ,
GSM15082 ,
GSM15083 ,
GSM15084 ,
GSM15085 ,
GSM15086 ,
GSM15087 ,
GSM15088 ,
GSM15089 ,
GSM15090 ,
GSM15091 ,
GSM15092 ,
GSM18191 ,
GSM18192 ,
GSM18193 ,
GSM18194 ,
GSM18195 ,
GSM18196 ,
GSM18197 ,
GSM18198 ,
GSM18199 ,
GSM18200 ,
GSM18201 ,
GSM18202 ,
GSM18203 ,
GSM18204 ,
GSM18205 ,
GSM18206 ,
GSM18207 ,
GSM18208 ,
GSM18209 ,
GSM18210 ,
GSM18211 ,
GSM18212 ,
GSM18213 ,
GSM18214 ,
GSM18215 ,
GSM18216 ,
GSM18217 ,
GSM18218 ,
GSM18219 ,
GSM18220 ,
GSM18221 ,
GSM18222 ,
GSM18223 ,
GSM18224 ,
GSM18225 ,
GSM18226 ,
GSM32384 ,
GSM32385 ,
GSM32386 ,
GSM32387 ,
GSM32388 ,
GSM32389 ,
GSM32390 ,
GSM32391 ,
GSM32392 ,
GSM32393 ,
GSM32395 ,
GSM32396 ,
GSM32397 ,
GSM32398 ,
GSM32399 ,
GSM32401 ,
GSM32402 ,
GSM32403 ,
GSM32404 ,
GSM32405 ,
GSM32406 ,
GSM32407 ,
GSM32408 ,
GSM32409 ,
GSM32410 ,
GSM32411 ,
GSM32723 ,
GSM32724 ,
GSM32725 ,
GSM32726 ,
GSM32727 ,
GSM32728 ,
GSM32734 ,
GSM32735 ,
GSM32736 ,
GSM32737 ,
GSM32738 ,
GSM32739 ,
GSM32740 ,
GSM32741 ,
GSM32742 ,
GSM32743 ,
GSM32744 ,
GSM32745 ,
GSM32746 ,
GSM32747 ,
GSM32748 ,
GSM32749 ,
GSM32750 ,
GSM32751 ,
GSM32752 ,
GSM32754 ,
GSM32756 ,
GSM32758 ,
GSM32759 ,
GSM32760 ,
GSM32762 ,
GSM32763 ,
GSM32764 ,
GSM32766 ,
GSM32767 ,
GSM32768 ,
GSM32769 ,
GSM32770 ,
GSM32779 ,
GSM32780 ,
GSM32782 ,
GSM32783 ,
GSM32784 ,
GSM32785 ,
GSM32786 ,
GSM32787 ,
GSM32789 ,
GSM32790 ,
GSM32791 ,
GSM32792 ,
GSM32793 ,
GSM32795 ,
GSM32796 ,
GSM32797 ,
GSM32798 ,
GSM32800 ,
GSM32801 ,
GSM32802 ,
GSM32803 ,
GSM32805 ,
GSM32806 ,
GSM32807 ,
GSM32808 ,
GSM32809 ,
GSM32811 ,
GSM32812 ,
GSM32813 ,
GSM32814 ,
GSM32815 ,
GSM32816 ,
GSM35396 ,
GSM35397 ,
GSM35398 ,
GSM35399 ,
GSM35400 ,
GSM35401 ,
GSM35402 ,
GSM111939 ,
GSM111940 ,
GSM111941 ,
GSM111942 ,
GSM111943 ,
GSM111944 ,
GSM111945 ,
GSM111946 ,
GSM111947 ,
GSM111948 ,
GSM111949 ,
GSM111950 ,
GSM111951 ,
GSM111952 ,
GSM111953 ,
GSM111954 ,
GSM111955 ,
GSM111956 ,
GSM111957 ,
GSM111958 ,
GSM111959 ,
GSM111960 ,
GSM111961 ,
GSM111962 ,
GSM111963 ,
GSM111964 ,
GSM111965 ,
GSM111966 ,
GSM111967 ,
GSM111968 ,
GSM111969 ,
GSM111970 ,
GSM111971 ,
GSM111972 ,
GSM111973 ,
GSM111974 ,
GSM111975 ,
GSM111976 ,
GSM111977 ,
GSM111978 ,
GSM111979 ,
GSM111980 ,
GSM111981 ,
GSM111982 ,
GSM111983 ,
GSM111984 ,
GSM111985 ,
GSM111986 ,
GSM111987 ,
GSM111988 ,
GSM111989 ,
GSM111990 ,
GSM111991 ,
GSM111992 ,
GSM111993 ,
GSM111994 ,
GSM111995 ,
GSM111996 ,
GSM111997 ,
GSM111998 ,
GSM111999 ,
GSM112000 ,
GSM112001 ,
GSM112002 ,
GSM112003 ,
GSM112004 ,
GSM112005 ,
GSM112006 ,
GSM112007 ,
GSM112008 ,
GSM112009 ,
GSM112010 ,
GSM112011 ,
GSM112012 ,
GSM112013 ,
GSM112014 ,
GSM112015 ,
GSM112016 ,
GSM112017 ,
GSM112018 ,
GSM112019 ,
GSM112020 ,
GSM112021 ,
GSM112022 ,
GSM112023 ,
GSM112024 ,
GSM112025 ,
GSM112026 ,
GSM112027 ,
GSM112028 ,
GSM112042 ,
GSM112043 ,
GSM112044 ,
GSM112045 ,
GSM112046 ,
GSM112047 ,
GSM112048 ,
GSM112049 ,
GSM112050 ,
GSM112051 ,
GSM112052 ,
GSM112053 ,
GSM112054 ,
GSM112055 ,
GSM112056 ,
GSM112057 ,
GSM112058 ,
GSM112059 ,
GSM112060 ,
GSM112061 ,
GSM112062 ,
GSM112063 ,
GSM112064 ,
GSM112065 ,
GSM112066 ,
GSM112067 ,
GSM112068 ,
GSM112069 ,
GSM112070 ,
GSM112071 ,
GSM112072 ,
GSM112073 ,
GSM112074 ,
GSM112075 ,
GSM112076 ,
GSM112077 ,
GSM112078 ,
GSM112079 ,
GSM112080 ,
GSM112081 ,
GSM112082 ,
GSM112083 ,
GSM112084 ,
GSM112085 ,
GSM112086 ,
GSM112087 ,
GSM112088 ,
GSM112089 ,
GSM112090 ,
GSM112091 ,
GSM112092 ,
GSM112093 ,
GSM112094 ,
GSM112095 ,
GSM112096 ,
GSM112097 ,
GSM112098 ,
GSM112099 ,
GSM112100 ,
GSM112101 ,
GSM112102 ,
GSM112103 ,
GSM112104 ,
GSM112105 ,
GSM112106 ,
GSM112107 ,
GSM112108 ,
GSM112109 ,
GSM112110 ,
GSM112111 ,
GSM112112 ,
GSM112113 ,
GSM112114 ,
GSM112115 ,
GSM112116 ,
GSM112117 ,
GSM112118 ,
GSM112119 ,
GSM112120 ,
GSM112121 ,
GSM112122 ,
GSM112123 ,
GSM112124 ,
GSM112125 ,
GSM112126 ,
GSM112127 ,
GSM112128 ,
GSM112129 ,
GSM288409 ,
GSM288410 ,
GSM288411 ,
GSM288412 ,
GSM288413 ,
GSM288414 ,
GSM288423 ,
GSM288424 ,
GSM288425 ,
GSM288426 ,
GSM288427 ,
GSM288428 ,
GSM288429 ,
GSM288430 ,
GSM288431 ,
GSM288432 ,
GSM288434 ,
GSM288436 ,
GSM288442 ,
GSM288445 ,
GSM288460 ,
GSM288462 ,
GSM288464 ,
GSM288490 ,
GSM288494 ,
GSM288496 ,
GSM288498 ,
GSM288500
Series (24)
GSE318
MK-DG vs MK C+S-DG
GSE334
Spleen vs Liver - Oligo - Single
GSE954
Day 1 anti-GBM mouse
GSE955
Day 3 anti-GBM mouse
GSE956
Day 7 anti-GBM mouse
GSE957
Day 11 anti-GBM mouse
GSE958
Day 16 anti-GBM mouse
GSE969
Anti-GBM antibody effect on kidney
GSE1098
Effect of LPS and LPS-binding protein treatment on RAW 264.4 cells
GSE1099
Effect of LPS and LPS-binding protein treatment for 1 hour on RAW 264.4 cells
GSE1100
Effect of LPS and LPS-binding protein treatment for 2 hours on RAW 264.4 cells
GSE1101
Effect of LPS and LPS-binding protein treatment for 4 hours on RAW 264.4 cells
GSE1102
Effect of LPS and LPS-binding protein treatment for 8 hours on RAW 264.4 cells
GSE1103
Effect of LPS and LPS-binding protein treatment for 16 hours on RAW 264.4 cells
GSE1104
Effect of LPS and LPS-binding protein treatment for 48 hours on RAW 264.4 cells
GSE1782
A Bioinformatics Analysis of Memory Consolidation Reveals Involvement of the Transcription Factor c-Rel
GSE1863
Dual Ligand Effects
GSE2001
Skeletal Muscle Response
GSE4962
Gene expression of RAW 264.7 cells treated with LPS, IFG, 2MA, LPS PLUS IFG, and LPS PLUS 2MA
GSE4964
Gene expression of RAW 264.7 cells treated with LPS, ISO, PGE2, LPS PLUS ISO, and LPS PLUS PGE2
GSE11449
RAW264.7 cells were treated with KDO, IFN beta and 8Br
Data table header descriptions
ID
Feature number which correpond to the order of genes on the array
ROW
Row-within array
COLUMN
Column-within array
UNIGENE
UniGene ID
CONTROL_TYPE
Designate place holders on the array
GENE
Gene Name
GB_ACC
GenBank accession number
SPOT_ID
Data table
ID
ROW
COLUMN
UNIGENE
CONTROL_TYPE
GENE
GB_ACC
SPOT_ID
1
1
1
1
Fiducial
Fiducial
2
1
2
1
Agilent QC
Agilent QC
3
1
3
-20000
Agilent_BLANK
Agilent_BLANK
4
1
4
1
Agilent QC
Agilent QC
5
1
5
-20000
Agilent_BLANK
Agilent_BLANK
6
1
6
1
Agilent QC
Agilent QC
7
1
7
-20000
Agilent_BLANK
Agilent_BLANK
8
1
8
1
0
Calcium binding protein A11 (calgizzarin)
M16465
9
1
9
8
0
Upstream transcription factor 1
X95316
10
1
10
711
0
Troponin T1, skeletal, slow
NM_011618
11
1
11
716
0
Cleavage and polyadenylation specific factor 2, 100kD subunit
AF012822
12
1
12
188
0
Phosphoglycerate kinase 1
M15668
13
1
13
194
0
FMS-like tyrosine kinase 3
X59398
14
1
14
1214
0
Homeo box D4
NM_010469
15
1
15
1221
0
Calcium binding protein A6 (calcyclin)
X66449
16
1
16
1626
0
Fas antigen
M83649
17
1
17
1644
0
Luteinizing hormone/choriogonadotropin receptor
M81310
18
1
18
1302
0
SFFV proviral integration 1
X17463
19
1
19
1306
0
Gastrulation brain homeobox 2
U74300
20
1
20
2241
0
Rho, GDP dissociation inhibitor (GDI) beta
L07918
Total number of rows: 16281 Table truncated, full table size 1086 Kbytes .
Supplementary data files not provided