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Platform GPL254 Query DataSets for GPL254
Status Public on Feb 25, 2003
Title Caltech 16K Oligo Mouse Array
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Mus musculus
 
Description The 16K mouse Oligo probes used in this microarray were designed and manufactured by different companies.
A total of 13,327 probes were designed and manufactured by Operon Technologies, Inc. while 2,304 probes were designed by Compugen and manufactured by Sigma Genosys.
Probes made by Operon are 70mers in length while probes made by Compugen and Sigma are 65mers in length.
The probes were inkjet-printed on the array by Agilent Technologies (Palo Alto, CA).
 
Citation(s) 19238203
Submission date Feb 24, 2003
Last update date Aug 29, 2019
Contact name Sangdun Choi
E-mail(s) schoi@caltech.edu
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Samples (379) GSM4619, GSM4620, GSM4621, GSM4622, GSM4623, GSM4624 
Series (24)
GSE315 Sal-CA1 vs MK-CA1
GSE316 Sal-DG vs MK-DG
GSE317 MK-CA1 vs MK C+S-CA1

Data table header descriptions
ID Feature number which correpond to the order of genes on the array
ROW Row-within array
COLUMN Column-within array
UNIGENE UniGene ID
CONTROL_TYPE Designate place holders on the array
GENE Gene Name
GB_ACC GenBank accession number
SPOT_ID

Data table
ID ROW COLUMN UNIGENE CONTROL_TYPE GENE GB_ACC SPOT_ID
1 1 1 1 Fiducial Fiducial
2 1 2 1 Agilent QC Agilent QC
3 1 3 -20000 Agilent_BLANK Agilent_BLANK
4 1 4 1 Agilent QC Agilent QC
5 1 5 -20000 Agilent_BLANK Agilent_BLANK
6 1 6 1 Agilent QC Agilent QC
7 1 7 -20000 Agilent_BLANK Agilent_BLANK
8 1 8 1 0 Calcium binding protein A11 (calgizzarin) M16465
9 1 9 8 0 Upstream transcription factor 1 X95316
10 1 10 711 0 Troponin T1, skeletal, slow NM_011618
11 1 11 716 0 Cleavage and polyadenylation specific factor 2, 100kD subunit AF012822
12 1 12 188 0 Phosphoglycerate kinase 1 M15668
13 1 13 194 0 FMS-like tyrosine kinase 3 X59398
14 1 14 1214 0 Homeo box D4 NM_010469
15 1 15 1221 0 Calcium binding protein A6 (calcyclin) X66449
16 1 16 1626 0 Fas antigen M83649
17 1 17 1644 0 Luteinizing hormone/choriogonadotropin receptor M81310
18 1 18 1302 0 SFFV proviral integration 1 X17463
19 1 19 1306 0 Gastrulation brain homeobox 2 U74300
20 1 20 2241 0 Rho, GDP dissociation inhibitor (GDI) beta L07918

Total number of rows: 16281

Table truncated, full table size 1086 Kbytes.






Download family Format
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Supplementary data files not provided

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