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Status
Public on Aug 22, 2018
Title
Genometry L1000™ Expression Profiling
Technology type
oligonucleotide beads
Distribution
commercial
Organism
Homo sapiens Manufacturer
Genometry, Inc.
Manufacture protocol
amino-modified oligonucleotides are covalently attached to Luminex® MagPlex® Microspheres
Description
L1000™ Expression Profiling is a high-throughput whole-genome gene-expression profiling assay based on the direct measurement of a reduced representation of the transcriptome and computational inference of the portion of the transcriptome not explicitly measured. The number of 'landmark' transcripts whose abundance is measured directly is nine hundred seventy eight (978). Eighty (80) additional invariant transcripts are also explicitly measured to enable scaling and normalization. Measurements of transcript abundance are made from crude cell lysates or purified total RNA in 384-well plate format with a combination of ligation-mediated amplification, optically-addressed microspheres, and flow cytometry. The inference model is trained on tens-of-thousands of public Affymetrix® GeneChip® gene-expression profiles. The resulting data are therefore denominated in the 22,268 (non-internal-control) features from the HG-U133A microarray. Landmark values are log-transformed, intra-sample scaled (against the invariant features), and intra-batch quantile normalized before the inference model is applied. A flag indicates whether a feature is measured ("LM") or inferred ("INF").
Web link
http://genometry.com Submission date
Aug 21, 2018
Last update date
Aug 22, 2018
Contact name
Justin Lamb
Organization name
Genometry, Inc.
Street address
37 Spinelli Place
City
Cambridge
State/province
MA
ZIP/Postal code
02138
Country
USA
Samples (5902)
GSM3363001 , GSM3363002 , GSM3363003 , GSM3363004 , GSM3363005 , GSM3363006
GSM3363007 ,
GSM3363008 ,
GSM3363009 ,
GSM3363010 ,
GSM3363011 ,
GSM3363012 ,
GSM3363013 ,
GSM3363014 ,
GSM3363015 ,
GSM3363016 ,
GSM3363017 ,
GSM3363018 ,
GSM3363019 ,
GSM3363020 ,
GSM3363021 ,
GSM3363022 ,
GSM3363023 ,
GSM3363024 ,
GSM3363025 ,
GSM3363026 ,
GSM3363027 ,
GSM3363028 ,
GSM3363029 ,
GSM3363030 ,
GSM3363031 ,
GSM3363032 ,
GSM3363033 ,
GSM3363034 ,
GSM3363035 ,
GSM3363036 ,
GSM3363037 ,
GSM3363038 ,
GSM3363039 ,
GSM3363040 ,
GSM3363041 ,
GSM3363042 ,
GSM3363043 ,
GSM3363044 ,
GSM3363045 ,
GSM3363046 ,
GSM3363047 ,
GSM3363048 ,
GSM3363049 ,
GSM3363050 ,
GSM3363051 ,
GSM3363052 ,
GSM3363053 ,
GSM3363054 ,
GSM3363055 ,
GSM3363056 ,
GSM3363057 ,
GSM3363058 ,
GSM3363059 ,
GSM3363060 ,
GSM3363061 ,
GSM3363062 ,
GSM3363063 ,
GSM3363064 ,
GSM3363065 ,
GSM3363066 ,
GSM3363067 ,
GSM3363068 ,
GSM3363069 ,
GSM3363070 ,
GSM3363071 ,
GSM3363072 ,
GSM3363073 ,
GSM3363074 ,
GSM3363075 ,
GSM3363076 ,
GSM3363077 ,
GSM3363078 ,
GSM3363079 ,
GSM3363080 ,
GSM3363081 ,
GSM3363082 ,
GSM3363083 ,
GSM3363084 ,
GSM3363085 ,
GSM3363086 ,
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GSM3363088 ,
GSM3363089 ,
GSM3363090 ,
GSM3363091 ,
GSM3363092 ,
GSM3363093 ,
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GSM3363095 ,
GSM3363096 ,
GSM3363097 ,
GSM3363098 ,
GSM3363099 ,
GSM3363100 ,
GSM3363101 ,
GSM3363102 ,
GSM3363103 ,
GSM3363104 ,
GSM3363105 ,
GSM3363106 ,
GSM3363107 ,
GSM3363108 ,
GSM3363109 ,
GSM3363110 ,
GSM3363111 ,
GSM3363112 ,
GSM3363113 ,
GSM3363114 ,
GSM3363115 ,
GSM3363116 ,
GSM3363117 ,
GSM3363118 ,
GSM3363119 ,
GSM3363120 ,
GSM3363121 ,
GSM3363122 ,
GSM3363123 ,
GSM3363124 ,
GSM3363125 ,
GSM3363126 ,
GSM3363127 ,
GSM3363128 ,
GSM3363129 ,
GSM3363130 ,
GSM3363131 ,
GSM3363132 ,
GSM3363133 ,
GSM3363134 ,
GSM3363135 ,
GSM3363136 ,
GSM3363137 ,
GSM3363138 ,
GSM3363139 ,
GSM3363140 ,
GSM3363141 ,
GSM3363142 ,
GSM3363143 ,
GSM3363144 ,
GSM3363145 ,
GSM3363146 ,
GSM3363147 ,
GSM3363148 ,
GSM3363149 ,
GSM3363150 ,
GSM3363151 ,
GSM3363152 ,
GSM3363153 ,
GSM3363154 ,
GSM3363155 ,
GSM3363156 ,
GSM3363157 ,
GSM3363158 ,
GSM3363159 ,
GSM3363160 ,
GSM3363161 ,
GSM3363162 ,
GSM3363163 ,
GSM3363164 ,
GSM3363165 ,
GSM3363166 ,
GSM3363167 ,
GSM3363168 ,
GSM3363169 ,
GSM3363170 ,
GSM3363171 ,
GSM3363172 ,
GSM3363173 ,
GSM3363174 ,
GSM3363175 ,
GSM3363176 ,
GSM3363177 ,
GSM3363178 ,
GSM3363179 ,
GSM3363180 ,
GSM3363181 ,
GSM3363182 ,
GSM3363183 ,
GSM3363184 ,
GSM3363185 ,
GSM3363186 ,
GSM3363187 ,
GSM3363188 ,
GSM3363189 ,
GSM3363190 ,
GSM3363191 ,
GSM3363192 ,
GSM3363193 ,
GSM3363194 ,
GSM3363195 ,
GSM3363196 ,
GSM3363197 ,
GSM3363198 ,
GSM3363199 ,
GSM3363200 ,
GSM3363201 ,
GSM3363202 ,
GSM3363203 ,
GSM3363204 ,
GSM3363205 ,
GSM3363206 ,
GSM3363207 ,
GSM3363208 ,
GSM3363209 ,
GSM3363210 ,
GSM3363211 ,
GSM3363212 ,
GSM3363213 ,
GSM3363214 ,
GSM3363215 ,
GSM3363216 ,
GSM3363217 ,
GSM3363218 ,
GSM3363219 ,
GSM3363220 ,
GSM3363221 ,
GSM3363222 ,
GSM3363223 ,
GSM3363224 ,
GSM3363225 ,
GSM3363226 ,
GSM3363227 ,
GSM3363228 ,
GSM3363229 ,
GSM3363230 ,
GSM3363231 ,
GSM3363232 ,
GSM3363233 ,
GSM3363234 ,
GSM3363235 ,
GSM3363236 ,
GSM3363237 ,
GSM3363238 ,
GSM3363239 ,
GSM3363240 ,
GSM3363241 ,
GSM3363242 ,
GSM3363243 ,
GSM3363244 ,
GSM3363245 ,
GSM3363246 ,
GSM3363247 ,
GSM3363248 ,
GSM3363249 ,
GSM3363250 ,
GSM3363251 ,
GSM3363252 ,
GSM3363253 ,
GSM3363254 ,
GSM3363255 ,
GSM3363256 ,
GSM3363257 ,
GSM3363258 ,
GSM3363259 ,
GSM3363260 ,
GSM3363261 ,
GSM3363262 ,
GSM3363263 ,
GSM3363264 ,
GSM3363265 ,
GSM3363266 ,
GSM3363267 ,
GSM3363268 ,
GSM3363269 ,
GSM3363270 ,
GSM3363271 ,
GSM3363272 ,
GSM3363273 ,
GSM3363274 ,
GSM3363275 ,
GSM3363276 ,
GSM3363277 ,
GSM3363278 ,
GSM3363279 ,
GSM3363280 ,
GSM3363281 ,
GSM3363282 ,
GSM3363283 ,
GSM3363284 ,
GSM3363285 ,
GSM3363286 ,
GSM3363287 ,
GSM3363288 ,
GSM3363289 ,
GSM3363290 ,
GSM3363291 ,
GSM3363292 ,
GSM3363293 ,
GSM3363294 ,
GSM3363295 ,
GSM3363296 ,
GSM3363297 ,
GSM3363298 ,
GSM3363299 ,
GSM3363300 ,
GSM3363301 ,
GSM3363302 ,
GSM3363303 ,
GSM3363304 ,
GSM3363305 ,
GSM3363306 ,
GSM3363307 ,
GSM3363308 ,
GSM3363309 ,
GSM3363310 ,
GSM3363311 ,
GSM3363312 ,
GSM3363313 ,
GSM3363314 ,
GSM3363315 ,
GSM3363316 ,
GSM3363317 ,
GSM3363318 ,
GSM3363319 ,
GSM3363320 ,
GSM3363321 ,
GSM3363322 ,
GSM3363323 ,
GSM3363324 ,
GSM3363325 ,
GSM3363326 ,
GSM3363327 ,
GSM3363328 ,
GSM3363329 ,
GSM3363330 ,
GSM3363331 ,
GSM3363332 ,
GSM3363333 ,
GSM3363334 ,
GSM3363335 ,
GSM3363336 ,
GSM3363337 ,
GSM3363338 ,
GSM3363339 ,
GSM3363340 ,
GSM3363341 ,
GSM3363342 ,
GSM3363343 ,
GSM3363344 ,
GSM3363345 ,
GSM3363346 ,
GSM3363347 ,
GSM3363348 ,
GSM3363349 ,
GSM3363350 ,
GSM3363351 ,
GSM3363352 ,
GSM3363353 ,
GSM3363354 ,
GSM3363355 ,
GSM3363356 ,
GSM3363357 ,
GSM3363358 ,
GSM3363359 ,
GSM3363360 ,
GSM3363361 ,
GSM3363362 ,
GSM3363363 ,
GSM3363364 ,
GSM3363365 ,
GSM3363366 ,
GSM3363367 ,
GSM3363368 ,
GSM3363369 ,
GSM3363370 ,
GSM3363371 ,
GSM3363372 ,
GSM3363373 ,
GSM3363374 ,
GSM3363375 ,
GSM3363376 ,
GSM3363377 ,
GSM3363378 ,
GSM3363379 ,
GSM3363380 ,
GSM3363381 ,
GSM3363382 ,
GSM3363383 ,
GSM3363384 ,
GSM3363385 ,
GSM3363386 ,
GSM3363387 ,
GSM3363388 ,
GSM3363389 ,
GSM3363390 ,
GSM3363391 ,
GSM3363392 ,
GSM3363393 ,
GSM3363394 ,
GSM3363395 ,
GSM3363396 ,
GSM3363397 ,
GSM3363398 ,
GSM3363399 ,
GSM3363400 ,
GSM3363401 ,
GSM3363402 ,
GSM3363403 ,
GSM3363404 ,
GSM3363405 ,
GSM3363406 ,
GSM3363407 ,
GSM3363408 ,
GSM3363409 ,
GSM3363410 ,
GSM3363411 ,
GSM3363412 ,
GSM3363413 ,
GSM3363414 ,
GSM3363415 ,
GSM3363416 ,
GSM3363417 ,
GSM3363418 ,
GSM3363419 ,
GSM3363420 ,
GSM3363421 ,
GSM3363422 ,
GSM3363423 ,
GSM3363424 ,
GSM3363425 ,
GSM3363426 ,
GSM3363427 ,
GSM3363428 ,
GSM3363429 ,
GSM3363430 ,
GSM3363431 ,
GSM3363432 ,
GSM3363433 ,
GSM3363434 ,
GSM3363435 ,
GSM3363436 ,
GSM3363437 ,
GSM3363438 ,
GSM3363439 ,
GSM3363440 ,
GSM3363441 ,
GSM3363442 ,
GSM3363443 ,
GSM3363444 ,
GSM3363445 ,
GSM3363446 ,
GSM3363447 ,
GSM3363448 ,
GSM3363449 ,
GSM3363450 ,
GSM3363451 ,
GSM3363452 ,
GSM3363453 ,
GSM3363454 ,
GSM3363455 ,
GSM3363456 ,
GSM3363457 ,
GSM3363458 ,
GSM3363459 ,
GSM3363460 ,
GSM3363461 ,
GSM3363462 ,
GSM3363463 ,
GSM3363464 ,
GSM3363465 ,
GSM3363466 ,
GSM3363467 ,
GSM3363468 ,
GSM3363469 ,
GSM3363470 ,
GSM3363471 ,
GSM3363472 ,
GSM3363473 ,
GSM3363474 ,
GSM3363475 ,
GSM3363476 ,
GSM3363477 ,
GSM3363478 ,
GSM3363479 ,
GSM3363480 ,
GSM3363481 ,
GSM3363482 ,
GSM3363483 ,
GSM3363484 ,
GSM3363485 ,
GSM3363486 ,
GSM3363487 ,
GSM3363488 ,
GSM3363489 ,
GSM3363490 ,
GSM3363491 ,
GSM3363492 ,
GSM3363493 ,
GSM3363494 ,
GSM3363495 ,
GSM3363496 ,
GSM3363497 ,
GSM3363498 ,
GSM3363499 ,
GSM3363500 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (17)
GSE119275 Expression-based drug screening of neural progenitor cells from individuals with schizophrenia [MSA101]
GSE119276 Expression-based drug screening of neural progenitor cells from individuals with schizophrenia [MSA102]
GSE119277 Expression-based drug screening of neural progenitor cells from individuals with schizophrenia [MSA103]
GSE119278 Expression-based drug screening of neural progenitor cells from individuals with schizophrenia [MSA104]
GSE119279 Expression-based drug screening of neural progenitor cells from individuals with schizophrenia [MSA105]
GSE119280 Expression-based drug screening of neural progenitor cells from individuals with schizophrenia [MSA106]
GSE119281 Expression-based drug screening of neural progenitor cells from individuals with schizophrenia [MSA107]
GSE119282 Expression-based drug screening of neural progenitor cells from individuals with schizophrenia [MSA108]
GSE119283 Expression-based drug screening of neural progenitor cells from individuals with schizophrenia [MSA201]
GSE119284 Expression-based drug screening of neural progenitor cells from individuals with schizophrenia [MSA202]
GSE119285 Expression-based drug screening of neural progenitor cells from individuals with schizophrenia [MSA203]
GSE119286 Expression-based drug screening of neural progenitor cells from individuals with schizophrenia [MSA204]
GSE119287 Expression-based drug screening of neural progenitor cells from individuals with schizophrenia [MSA205]
GSE119288 Expression-based drug screening of neural progenitor cells from individuals with schizophrenia [MSA206]
GSE119289 Expression-based drug screening of neural progenitor cells from individuals with schizophrenia [MSA207]
GSE119291 Expression-based drug screening of neural progenitor cells from individuals with schizophrenia
GSE144235 Incorporation of In Vitro Techniques for Botanicals Dietary Supplement Safety Assessment – Towards evaluation of Developmental and Reproductive Toxicity (DART)
Data table header descriptions ID Affymetrix probeset
FLAG measured ("LM") or inferred ("INF")
SEQUENCE gene-specific segment of ligation probes
SPOT_ID
Data table ID FLAG SEQUENCE SPOT_ID 1007_s_at
LM
GCTTCTTCCTCCTCCATCACCTGAAACACTGGACCTGGGG
1007_s_at
121_at
LM
TGTGCTTCCTGCAGCTCACGCCCACCAGCTACTGAAGGGA
121_at
200024_at
LM
ATGCCTTCGAGATCATACACCTGCTCACAGGCGAGAACCC
200024_at
200045_at
LM
GGTGGTGCTGTTCTTTTCTGGTGGATTTAATGCTGACTCA
200045_at
200053_at
LM
TGCTATTAGAGCCCATCCTGGAGCCCCACCTCTGAACCAC
200053_at
200059_s_at
LM
ACAGCCCTCCTCTGCACTCCCACCTGACACACCAGGCGCT
200059_s_at
200060_s_at
LM
CGTTCATGGTGGTCTTTCAGGTTATCTTGGCAACATGTAC
200060_s_at
200071_at
LM
GGATGTGTGATGTTTATATGGGAGAACAAAAAGCTGATGT
200071_at
200078_s_at
LM
TCCAGAGTGAAGATGGGTGACTAGATGATATGTGTGGGTG
200078_s_at
200081_s_at
LM
CTGGGCCCCAAAAGAGCTAGCAGAATCCGCAAACTTTTCA
200081_s_at
200083_at
LM
CACCACTGCAACATATAGACCTGAGTGCTATTGTATTTTG
200083_at
200602_at
LM
TCATTGCTTATGACATGATCGCTTTCTACACTGTATTACA
200602_at
200614_at
LM
ACAACACTAATCAGCACATCGTACACTGGATTGCAGTGCT
200614_at
200617_at
LM
TTTCCCATCCTCTCTCTGTGGAGGCCAAACCAACTCTTTG
200617_at
200621_at
LM
AGGCATGGGCTGTACCCAAGCTGATTTCTCATCTGGTCAA
200621_at
200622_x_at
LM
TATCACCACCAAGGAGTTGGGGACAGTGATGAGATCCCTG
200622_x_at
200636_s_at
LM
GTCCTTATTATCCCAGCTTGCTGAGGGGCAGGGAGAGCGC
200636_s_at
200666_s_at
LM
CTCTGTATAGGGCCATAATGGAATTCTGAAGAAATCTTGG
200666_s_at
200670_at
LM
AGTTTGCTTCTGTAAGCAACGGGAACACCTGCTGAGGGGG
200670_at
200678_x_at
LM
CCTGTCAGAAGGGGGTTGTGGCAAAAGCCACATTACAAGC
200678_x_at
22268 621 Kbytes .Supplementary data files not provided
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