GEO help: Mouse over screen elements for information.
Status
Public on Jun 21, 2005
Title
NIA Mouse 22K Microarray v2.0 (Development 60-mer Oligo)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Mus musculus Manufacturer
Agilent
Manufacture protocol
As descripted by Agilent manuals under Platform_web_link
Support
glass
Coating
aminosilane
Description
NIA Mouse 22K Microarray v2.0 contains 21,052 60-mer oligonucleotides representing over 20,000 known and predicted mouse genes. The sequence annotation information is based on the NIA Mouse Gene Index 4.0 http://lgsun.grc.nia.nih.gov/geneindex4, which combines genome assembly sequences from public databases (RefSeq, Ensembl, Riken), and the NIA collection of public EST libraries derived from stem cells and early stage of mouse embryos, along with human-curated genetic databases to form structure models of over 40,000 genetic loci4.
Web link
http://www.chem.agilent.com/scripts/generic.asp?lpage=11617&indcol=N&prodcol=Y Submission date
Jun 16, 2005
Last update date
Jan 17, 2013
Contact name
Minoru S.H. Ko
E-mail(s)
kom@mail.nih.gov Phone
410-558-8359
Organization name
NIH
Department
National Institute on Aging
Lab
Lab of Genetics
Street address
251 Bayview Blvd, Suite 100, 10C
City
Baltimore
State/province
MD
ZIP/Postal code
21224
Country
USA
Samples (89)
GSM80045 , GSM80046 , GSM80047 , GSM80048 , GSM80049 , GSM80050
GSM80051 ,
GSM80052 ,
GSM80053 ,
GSM80054 ,
GSM93412 ,
GSM93413 ,
GSM93414 ,
GSM93415 ,
GSM93416 ,
GSM93417 ,
GSM93418 ,
GSM93419 ,
GSM93420 ,
GSM93421 ,
GSM93422 ,
GSM93423 ,
GSM93424 ,
GSM93425 ,
GSM93426 ,
GSM93427 ,
GSM93428 ,
GSM93429 ,
GSM93430 ,
GSM93431 ,
GSM93432 ,
GSM93433 ,
GSM93434 ,
GSM93435 ,
GSM93436 ,
GSM93437 ,
GSM93438 ,
GSM93439 ,
GSM93440 ,
GSM93441 ,
GSM93442 ,
GSM93443 ,
GSM93444 ,
GSM93445 ,
GSM93446 ,
GSM93447 ,
GSM93448 ,
GSM93449 ,
GSM93450 ,
GSM93451 ,
GSM93452 ,
GSM93453 ,
GSM93454 ,
GSM93455 ,
GSM93456 ,
GSM93457 ,
GSM93458 ,
GSM93459 ,
GSM93460 ,
GSM93461 ,
GSM93462 ,
GSM93463 ,
GSM93464 ,
GSM114418 ,
GSM114419 ,
GSM114420 ,
GSM114421 ,
GSM114422 ,
GSM114423 ,
GSM137893 ,
GSM137894 ,
GSM213646 ,
GSM213647 ,
GSM213648 ,
GSM213649 ,
GSM213650 ,
GSM213651 ,
GSM213652 ,
GSM213653 ,
GSM213654 ,
GSM213655 ,
GSM213656 ,
GSM213657 ,
GSM213658 ,
GSM213659 ,
GSM213660 ,
GSM213661 ,
GSM213662 ,
GSM213663 Series (8)
GSE3508 Transcript copy number estimation using a mouse whole-genome oligonucleotide microarray (22k Linearity)
GSE4075 Neural induction (Embrioid bodies-Retinoic acid)
GSE4076 Neural induction (N2B27 monolayer cluture)
GSE4077 ES, EC, NS, TS, Placenta and Neural induction (N2B27) comaprison
GSE4082 Defining a developmental path to neural fate by global expression profiling of mouse ESCs and adult NS cells
GSE5077 The absence of a Ca(2+) signal during mouse egg activation can affect development and gene expression patterns
GSE5930 Klf4 cooperates with Oct3/4 and Sox2 to activate the Lefty1 core promoter in embryonic stem cells
GSE8617 Identification of Pou5f1, Sox2, and Nanog downstream target genes with statistical confidence by applying a novel algor
Data table header descriptions ID Feature Number
Row Feature location row
Col Feature location column
Start Start position of the probe sequence
ProbeUID Unique integer for each unique probe in a design
ControlType Feature control type 0=Control type none 1=Positive control -1=Negative control -1000=Deletion control -2000=Not probe
ProbeName An Agilent-assigned identifier for the probe synthesized on the microarray
GeneName This is an identifier for the gene for which the probe provides expression information. The target sequence identified by the systematic name is normally a representative or consensus sequence for the gene
OLIGO_NAME NIA Universal Oligo Name
GB_LIST GenBank accession list ,
SPOT_ID SP_LIST SwissProt accession list
SEQUENCE Sequence of oligonucleotide probe
GENE Entrez GENE ID
GENE_SYMBOL GENE_DESCRIPTION Gene Description Based on NIA Gene Index 4
Data table ID Row Col Start ProbeUID ControlType ProbeName GeneName OLIGO_NAME GB_LIST SPOT_ID SP_LIST SEQUENCE GENE GENE_SYMBOL GENE_DESCRIPTION 1
1
1
0
0
1
Pro25G_T10_Pro25G
BrightCorner
Positive Control
ATCATCGTAGCTGGTCAGTGTATCCTTTTTTTTTTATCATCGTAGCTGGTCAGTGTATCC
2
1
2
1
1
-1
(-)3xSLv1
3xSLv1
Negative Control
GCTAGCGAAAGCTAGCTTTTCGATCGGAAACGATCGTTTTCCAGTGACGAAAGTCACTGG
3
1
3
1408
2
0
Z316943-1
NM_025899.1
Z00012353-1
AK003975 , AK004492 , AK005151 , AK007669 , AK075856 , AK077583 , AK088103 , BC003423 , CL302478 , CL640655 Q9DB77
TGGAAACTTGGGACATACGCCTTTTCTCGACGAGTTATAACACATGCGTGTATTTAAAGC
Uqcrc2
Mus musculus ubiquinol cytochrome c reductase core protein 2 (Uqcrc2), mRNA
4
1
4
1279
3
0
Z314460-1
BC026055.1
Z00007008-1
AF237702 , AK010439 , BC026055 , X94478 , BC034609 P50431
ACAGGTGGCTCTGATAATCACTTGATCCTAATGGATCTGCGTTCTAAGGGTACTGATGGT
20425 Shmt1
serine hydroxymethyl transferase 1 (soluble)
6
1
6
0
4
1
r60_n9
r60_n9
Positive Control
AGTGGTTCTACGAAAAACTGGCAGTCAAAAGAAAGGAGGTTATTGCCAGATAAAATGGGG
7
1
7
0
5
1
Pro25G_EQCP1_T5
QC_Fusion
Positive Control
_____ATCATCGTAGCTGGTCAGTGTATCCGGTCAGTGTATCCAGTTTCTCCGAATTTTT
8
1
8
883
6
0
Z316876-1
NM_011340.2
Z00012234-1
AF017057 , AF036164 , AK012411 , BC019852 , D50460 , AY078171 P97298
AACTTGACCATGATAGAAGAGAGCCTCACCTCTGAGTTCATTCATGACATCGACCGAGAA
20317 Serpinf1
serine (or cysteine) proteinase inhibitor, clade F, member 1
9
1
9
3204
7
0
Z305804-1
XM_287852.1
Z00028157-1
AK032654 , AK041887 CTCTGCCTCTTGCACCCTGAGAAATAAGCACCTTTTCTCTGCCTCACAGTCCTGGCAGGA
C230057M02Rik
RIKEN cDNA C230057M02 gene
10
1
10
1445
8
0
Z317687-1
NM_026276.1
Z00014014-1
AK007737 , AK008554 , AK010557 , AK013111 , AK014188 , AK018191 , AK028700 , AK029523 , AK031766 , AK076099 GTATGACATCTGTTTAAGGTATCAACATTGCAACACTCATTTTGCCTTGACTGTAGTAAC
67618 Aasdhppt
aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase
11
1
11
2711
9
0
Z319161-1
NM_009538.1
Z00035931-1
AF147785 , AF324471 , BC065150 , X95503 , BC004796 AGACAAAACTGGTTGTCAGTCATATCTGACAGAAGAAAGAAATCACTGTGTAACCAAGCC
22634 Plagl1
pleiomorphic adenoma gene-like 1
12
1
12
524
10
0
Z305174-1
CA888963
Z00027527-1
ATTCTATCCATTGTATCTAGGAAAGCACCTAAGCAAGGCAGAAGGCCATATCCCGATCCA
13
1
13
1228
11
0
Z319717-1
NM_175369.2
Z00018940-1
AK007133 TGAATCAGGTATCTGTTGGTTAAAGTGTCTTCCTGTCTATAGTGCATAGCACTAGGTAGA
4933415L06Rik
RIKEN cDNA 4933415L06 gene
14
1
14
0
5
1
Pro25G_EQCP1_T5
QC_Fusion
Positive Control
_____ATCATCGTAGCTGGTCAGTGTATCCGGTCAGTGTATCCAGTTTCTCCGAATTTTT
15
1
15
2380
12
0
Z316754-1
NM_133656.2
Z00012015-1
AF239673 , AK028179 , AK028488 , AK036905 , AK052795 , AK076097 , AK088519 , BC012216 , BC031149 , BZ690217 Q64010
GATGAATTTGCATTCATTGAACATATACCAAATCATGTGACTGAAGTGACTAGCACATTG
12928 Crk
v-crk sarcoma virus CT10 oncogene homolog (avian)
16
1
16
1158
13
0
Z315305-1
NM_019563.1
Z00034917-1
AF143369 , AK012136 , AK083889 AACCCCTGCAGAGTGGACCGATCGTCCCGCTGGCCTCTAAAACCAAAATAAAACTGGGTT
56222 Cited4
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4
17
1
17
3631
14
0
Z302266-1
NM_013661.1
Z00024625-1
AK078659 , AK129362 , BC052397 , BC052504 Q60519
CTGAGCTGTGGACCTATTGGGTATGTGAGGAACTTGGAGAGTAGAGATGGCAGAGAATGG
20357 Sema5b
sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B
18
1
18
3079
15
0
Z307568-1
AK029270.1
Z00029921-1
AK036937 GTGCTGTGACTGCCCCTGATGTAATGTTCCACGTATGGTTGGGACTGTGCTGGGGAGAAC
Q8ce09
19
1
19
2143
16
0
Z308315-1
NM_017478.2
Z00030667-1
AF205065 , AJ251067 , AK079599 , AK088492 , BC008136 , BC049178 , AK089962 AGCCTCCCTTACAATCAGCCAGGAATATGCTACACACTTGTTCGATTGCCAGATGAAGAT
Copg2
coatomer protein complex, subunit gamma 2
20
1
20
3015
17
0
Z315168-1
NM_139303.1
Z00008836-1
AK036722 , AK041469 , AK044795 , AK049197 , AK082913 , BC004740 , BC016095 , CL639218 CCCATTTCTCAAATATTTGGTATGCTTGAAAATCTCTAAGTCACCATGATGCCAATTTAC
228421 Kif18a
kinesin family member 18A
21
1
21
0
5
1
Pro25G_EQCP1_T5
QC_Fusion
Positive Control
_____ATCATCGTAGCTGGTCAGTGTATCCGGTCAGTGTATCCAGTTTCTCCGAATTTTT
22132 4296 Kbytes .Supplementary data files not provided
Less...
More...