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Platform GPL25538 Query DataSets for GPL25538
Status Public on Sep 07, 2018
Title Agilent-084856 Diphtheria array 084314 [Feature number version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Corynebacterium diphtheriae NCTC 13129
Manufacturer Agilent Technologies
Manufacture protocol See manufacturer's web site at http://www.agilent.com/ .
 
Description Arrays of this design have barcodes that begin with 16084856 or 2584856.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Sep 06, 2018
Last update date Sep 07, 2018
Contact name Michael Schmitt
Organization name US Food and Drug Administration
Street address 10903 New Hampshire Ave
City Silver Spring
State/province MD
ZIP/Postal code 20993
Country USA
 
Relations
Alternative to GPL25539

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 CUST_1508_PI436156936 CUST_1508_PI436156936 FALSE lcl|WP_010935225.1_1532 unmapped TGGCGATCCAGACCTAATGCCAAAAGATTGGTCGTATGGAGATATCTACTTTACTGATGA
5 96 156 CUST_1243_PI436156936 CUST_1243_PI436156936 FALSE lcl|WP_010935014.1_1261 unmapped TCAGCTTCGTAATACAGAAGCAGTTTTCGATGTTTACCGTGTGACTTCTGGGGGTTAA
6 96 154 CUST_343_PI436156936 CUST_343_PI436156936 FALSE lcl|WP_010934279.1_354 unmapped AAGATCCACATTGATGCCTTTATTACTGGCATTCAGTGGAAAGACGGATTCACACTGAAG
7 96 152 CUST_277_PI436156936 CUST_277_PI436156936 FALSE lcl|WP_010934215.1_287 unmapped CAAAAATCCAACTAGAGCACAATGGGTTCCCATGAACCGATTGACTGCAGCTTGTG
8 96 150 CUST_1810_PI436156936 CUST_1810_PI436156936 FALSE lcl|WP_003852854.1_1842 unmapped GATGATTACCTCTGCGGTAGTTGACGAGGTCATCGTGATTATCAGCCCCCAAATG
9 96 148 CUST_801_PI436156936 CUST_801_PI436156936 FALSE lcl|WP_010934658.1_818 unmapped CAGTTTTATCGCATACGGTAGTCAAAGACGATCTAGCTGCAGGATCACTCAAACGAATCC
10 96 146 CUST_1920_PI436156936 CUST_1920_PI436156936 FALSE lcl|WP_010935572.1_1957 unmapped GTTGATCTTTGATCCGCTGAGCCAAGAGCAGCTCACACACATTGTGGAGATTCAGATTG
11 96 144 CUST_462_PI436156936 CUST_462_PI436156936 FALSE lcl|WP_004566834.1_474 unmapped TGCCAGCTTTAGATGGCTTTGCTGATCTAGAGTTTGATCTTTCTCTCCTAAAGAAGCACC
12 96 142 CUST_1763_PI436156936 CUST_1763_PI436156936 FALSE lcl|WP_003852791.1_1791 unmapped CAGAAGTCCCCAAGTTCGAACAAGAGCCATTCTGACTCTTATGTGGATGACTATGAGGAC
13 96 140 CUST_182_PI436156936 CUST_182_PI436156936 FALSE lcl|WP_041627749.1_190 unmapped CTCCTCGAACTCAAGAACACGAAAACCGCAGGAAGCGAAAATCTCCTGAAAGTG
14 96 138 CUST_1317_PI436156936 CUST_1317_PI436156936 FALSE lcl|WP_003851871.1_1336 unmapped TAATCAATCTGATTCTGCTCATAGTGGCAATGCTTCAGCTGTGCAGTCTGAAAAGATTGC
15 96 136 CUST_1591_PI436156936 CUST_1591_PI436156936 FALSE lcl|WP_010935295.1_1616 unmapped GTGGAAGAGGAAGAAGAACCAGGTTTTAAGATCGTGGAACAAACACGACCTAAGACACAA
16 96 134 CUST_1052_PI436156936 CUST_1052_PI436156936 FALSE lcl|WP_010934852.1_1069 unmapped CAACCTCGCAACTGCTGCAAGTATTTGTATGTACGAGTCTTCAAAATCACAAGCTCACAA
17 96 132 CUST_1272_PI436156936 CUST_1272_PI436156936 FALSE lcl|WP_010935042.1_1290 unmapped GTGACATCGCCGAATGGAGCCGAAACGGTTTTATTTTGGAAAAACTTCGTGTATTCGAT
18 96 130 CUST_125_PI436156936 CUST_125_PI436156936 FALSE lcl|WP_010934068.1_130 unmapped CATTGACGGTAAATAAAGAGGATGTGGCTAAGGCTACGTTCGACGCTGTGCTCAAC
19 96 128 NA NA ignore
20 96 126 CUST_832_PI436156936 CUST_832_PI436156936 FALSE lcl|WP_010934681.1_849 unmapped TTTAACTACTTCGATTCCAAAGAAAATGCCGTCTTCGGCGACATCCAAGTCGACATTTTG

Total number of rows: 15744

Table truncated, full table size 2031 Kbytes.




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