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GEO accession:
Platform GPL26634
Query DataSets for GPL26634
Status
Public on May 08, 2019
Title
Duke/RG_uPBM_4x44k_with_GR_probes
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
synthetic construct
Manufacturer
Agilent Technologies
Manufacture protocol
In situ oligosynthesized array with synthetic sequences that cover all possible 10-mers, plus custom sequences containing DNA binding site for human GR protein
Submission date
May 07, 2019
Last update date
May 08, 2019
Contact name
Raluca Gordan
E-mail(s)
raluca.gordan@duke.edu
Organization name
Duke University
Department
Center for Genomic and Computational Biology
Street address
101 Science Dr, CIEMAS 2179
City
Durham
State/province
NC
ZIP/Postal code
27708
Country
USA
Samples (1)
GSM3754997
Series (2)
GSE130833
QBiC-Pred: Quantitative Predictions of Transcription Factor Binding Changes Due to Sequence Variants III
GSE130837
QBiC-Pred: Quantitative Predictions of Transcription Factor Binding Changes Due to Sequence Variants
Data table header descriptions
ID
Column
Row
Name
SPOT_ID
SEQUENCE
Data table
ID
Column
Row
Name
SPOT_ID
SEQUENCE
1_1
1
1
GE_BrightCorner
GE_BrightCorner
2_1
2
1
GE_BrightCorner
GE_BrightCorner
3_1
3
1
DarkCorner
DarkCorner
4_1
4
1
DarkCorner
DarkCorner
5_1
5
1
DarkCorner
DarkCorner
6_1
6
1
DarkCorner
DarkCorner
7_1
7
1
DarkCorner
DarkCorner
8_1
8
1
DarkCorner
DarkCorner
9_1
9
1
DarkCorner
DarkCorner
10_1
10
1
DarkCorner
DarkCorner
11_1
11
1
DarkCorner
DarkCorner
12_1
12
1
DarkCorner
DarkCorner
13_1
13
1
DarkCorner
DarkCorner
14_1
14
1
DarkCorner
DarkCorner
15_1
15
1
DarkCorner
DarkCorner
16_1
16
1
DarkCorner
DarkCorner
17_1
17
1
DarkCorner
DarkCorner
18_1
18
1
DarkCorner
DarkCorner
19_1
19
1
DarkCorner
DarkCorner
20_1
20
1
All10mer_deBruijn_Jan07_40399
dBr_Jan07_40399
CACTTCATTGTAACAGACTAAACCGCGTTAGCGCCGGTCTGTGTTCCGTTGTCCGTGCTG
Total number of rows:
45220
Table truncated, full table size
5194 Kbytes
.
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