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Platform GPL27460 Query DataSets for GPL27460
Status Public on Jun 22, 2021
Title Agilent-054169 Drosophila_60k_130714 021791
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Drosophila melanogaster
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description based on 44k catalog
Arrays of this design have barcodes that begin with 16054169 or 2554169.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Sep 13, 2019
Last update date Dec 23, 2020
Contact name yoan renaud
E-mail(s) yoan.renaud@uca.fr
Organization name igred
Street address place henri dunand
City clermont ferrand
ZIP/Postal code 63000
Country France
 
Samples (54) GSM4079386, GSM4079387, GSM4079388, GSM4079389, GSM4079390, GSM4079391 
Series (1)
GSE137443 TRAP analysis of somatic muscle populations in Drosophila embryos

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocuslinkID
ORF Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID ORF GENE_NAME UNIGENE_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE
1 192 328 GE_BrightCorner CONTROL pos
2 192 326 DarkCorner CONTROL pos
3 192 324 DarkCorner CONTROL pos
4 192 322 A_09_P128175 FALSE NM_140104 NM_140104 39152 Ilp4 Insulin-like peptide 4 Dm.14249 ref|NM_140104|dgc|RE27042|gb|AY071235|tc|TC255700 chr3L:9796552-9796493 dm|3L67C8 "Drosophila melanogaster Insulin-like peptide 4 (Ilp4), mRNA [NM_140104]" GO:0005158(insulin receptor binding)|GO:0005179(hormone activity)|GO:0005576(extracellular region)|GO:0008286(insulin receptor signaling pathway)|GO:0030536(larval feeding behavior) TCATTGTAAAATTTCTAGTGGAGGCAAATAAAGTTACTCTCCAAGCAGCAGCAGAAAAAA
5 192 320 A_09_P199540 FALSE tc|TC239779 chr2L:15925757-15926042 dm|2L35D6 "Rep: CG4793-PC, isoform C - Drosophila melanogaster (Fruit fly), partial (76%) [TC239779]" GO:0004252(serine-type endopeptidase activity) GAAATCGGAGCAGTTCCAGATTTGGTGCAACCGGTACCGGAATGCAAGGAAATAATATAG
6 192 318 NA UNKNOWN ignore
7 192 316 A_09_P223830 FALSE tc|TC247152 chr2R:15368333-15368392 dm|2R56D11 "Rep: SJCHGC07833 protein - Schistosoma japonicum (Blood fluke), partial (5%) [TC247152]" CACCTCACGCTAGGAAGGCTCTTTTGTTCTTGTCTATTTCTTTCATTTATTAAATACATG
8 192 314 A_09_P004896 FALSE chr3RHet:001564982-001564923 CGCCAGGTTGAAATTCTTAATTCGGGAAGGTCATGGATTACATTGAAAGATGTTGAAGTG
9 192 312 A_09_P070606 FALSE NM_142881 NM_142881 42754 CG6763 CG6763 gene product from transcript CG6763-RA FBgn0039069 fly|FBtr0084378|fly|FBtr0334497|ref|NM_142881|dgc|RE28575 chr3R:19111658-19111717 dm|3R94E9 "This gene is referred to in FlyBase by the symbol Dmel\CG6763 (FBgn0039069). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function</span>: metalloendopeptidase activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: proteolysis. 3 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Metallopeptidase, catalytic domain; Peptidase M12A, astacin; Peptidase, metallopeptidase. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 18-24 hour embryonic stages, during early pupal stages. [FBtr0084378]" GO:0004222(metalloendopeptidase activity)|GO:0006508(proteolysis)|GO:0008270(zinc ion binding)|GO:0017090(meprin A complex) CGCTCGAAAGTATTTAACGCATTCCACATACAAAAAATCTAGCACCATTACTTAAACATG
10 192 310 NA UNKNOWN ignore
11 192 308 A_09_P220700 FALSE tc|TC254152 chr2L:007034891-007034950 dm|2L27D5 CTCGCCGTCGTGAACCATCTGTGTGTGTGCCATATACAAATTAAATATATTACATATATT
12 192 306 A_09_P023221 FALSE NM_136058 NM_136058 35130 Grip71 CG10346 gene product from transcript CG10346-RA FBgn0032705 fly|FBtr0081099|ref|NM_136058|dgc|RE05579|dgc|RE59956 chr2L:18710995-18711054 dm|2L37A1 Grip71 [Source:FlyBase gene name;Acc:FBgn0032705] [FBtr0081099] GO:0005737(cytoplasm)|GO:0007052(mitotic spindle organization)|GO:0007067(mitosis)|GO:0008274(gamma-tubulin ring complex)|GO:0043015(gamma-tubulin binding)|GO:0051297(centrosome organization)|GO:0051298(centrosome duplication)|GO:0051726(regulation of cell cycle) TTAAAGGCCAAATTGAAGTTTTACCAGGAGCAGGAGCAAACTGAATCATGCGGAGAGTAA
13 192 304 A_09_P166955 FALSE tc|TC240916 chr3R:9078975-9078916 dm|3R87E3 GCATGAGCCAGACTAATTGACAAGCGCCGAGTCTACATAAATATTAAATAACTTTGTAAT
14 192 302 A_09_P076651 FALSE NM_079953 NM_079953 44096 wit wishful thinking FBgn0024179 fly|FBtr0073279|fly|FBtr0330072|ref|NM_079953|dgc|GH13548 chr3L:4064280-4064221 dm|3L64A5 wishful thinking [Source:FlyBase gene name;Acc:FBgn0024179] [FBtr0073279] "GO:0004672(protein kinase activity)|GO:0005024(transforming growth factor beta-activated receptor activity)|GO:0005026(transforming growth factor beta receptor activity, type II)|GO:0005524(ATP binding)|GO:0005886(plasma membrane)|GO:0006468(protein phosphorylation)|GO:0007165(signal transduction)|GO:0007274(neuromuscular synaptic transmission)|GO:0007528(neuromuscular junction development)|GO:0016020(membrane)|GO:0046331(lateral inhibition)|GO:0048813(dendrite morphogenesis)" GTACTTAGACCAAAACACCCACAGCCTTTCAATCACATAAAATGCAAGTCTAGTTATATA
15 192 300 A_09_P055946 FALSE NM_140450 NM_140450 39586 CG4613 CG4613 gene product from transcript CG4613-RC FBgn0036427 fly|FBtr0333038|fly|FBtr0333039|ref|NM_140450|gb|BT125129 chr3L:14513012-14512953 dm|3L70E1 "This gene is referred to in FlyBase by the symbol Dmel\CG4613 (FBgn0036427). It is a protein_coding_gene from Drosophila melanogaster. It is reported to have molecular function</span>: serine-type endopeptidase activity. It is reported to be involved in the biological process</span>: proteolysis. 3 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Peptidase S1/S6, chymotrypsin/Hap; Peptidase S1/S6, chymotrypsin/Hap, active site; Peptidase S1A, chymotrypsin-type; Peptidase cysteine/serine, trypsin-like. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of no expression detected. Peak expression observed during early larval stages. [FBtr0333038]" GO:0004252(serine-type endopeptidase activity)|GO:0006508(proteolysis) TCTCGCTATTTGGAATGGATAGCAGTTAATACGAGGGACTCTTGTTACTGCATAAACTAA
16 192 298 A_09_P059641 FALSE NM_169964 NM_169964 326133 CG31343 CG31343 gene product from transcript CG31343-RA FBgn0051343 fly|FBtr0084126|ref|NM_169964|dgc|LP05233|dgc|GH24371 chr3R:17574616-17574675 dm|3R93F8 "This gene is referred to in FlyBase by the symbol Dmel\CG31343 (FBgn0051343). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function</span>: aminopeptidase activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: proteolysis. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Domain of unknown function DUF3358; Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase; Peptidase M1, aminopeptidase N; Peptidase M1, membrane alanine aminopeptidase, N-terminal. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of very low expression. Peak expression observed within 18-24 hour embryonic stages, at stages throughout the larval period, in stages of adults of both sexes. [FBtr0084126]" GO:0004177(aminopeptidase activity)|GO:0006508(proteolysis)|GO:0008237(metallopeptidase activity)|GO:0008270(zinc ion binding) GATGGCTCTGTTGCTATTCAGGCTATATTAAGATAACTCACGTGGTCAAGTATTAAACAT
17 192 296 A_09_P179985 FALSE tc|TC237571 chr3L:18436086-18436027 dm|3L75C6 TATTCGTTTTCGAATTGAAAAACCAAGGTTTAGACTTGCTTATTGCATTCTACCTCCCAT
18 192 294 A_09_P205770 FALSE NM_170555 43724 CycG Cyclin G FBgn0039858 fly|FBtr0085802|fly|FBtr0085803|fly|FBtr0085800|fly|FBtr0085799 chr3R:27425012-27424953 dm|3R100C7 Cyclin G [Source:FlyBase gene name;Acc:FBgn0039858] [FBtr0085802] GO:0005700(polytene chromosome)|GO:0016538(cyclin-dependent protein kinase regulator activity)|GO:0045749(negative regulation of S phase of mitotic cell cycle)|GO:2000134(negative regulation of G1/S transition of mitotic cell cycle) ATTTTCGAACAATGTTAGTATCCAGCGACAGCCAGCAGCATTAGAGCAGCAGGATCAACA
19 192 292 A_09_P031701 FALSE NM_205912 NM_205912 33768 nompC no mechanoreceptor potential C FBgn0016920 fly|FBtr0079075|ref|NM_205912|tc|NP12807266|tc|TC222127 chr2L:5362150-5362209 dm|2L25D6 no mechanoreceptor potential C [Source:FlyBase gene name;Acc:FBgn0016920] [FBtr0079075] GO:0005216(ion channel activity)|GO:0005262(calcium channel activity)|GO:0005929(cilium)|GO:0006816(calcium ion transport)|GO:0007605(sensory perception of sound)|GO:0007638(mechanosensory behavior)|GO:0008092(cytoskeletal protein binding)|GO:0008381(mechanically-gated ion channel activity)|GO:0016020(membrane)|GO:0030506(ankyrin binding)|GO:0040011(locomotion)|GO:0050954(sensory perception of mechanical stimulus)|GO:0050974(detection of mechanical stimulus involved in sensory perception)|GO:0070588(calcium ion transmembrane transport) GTGGTTGTACTCATTAACCTGCTAATTGCCATGATGTCGGATACTTATCAGCGCATTCAG
20 192 290 NA UNKNOWN ignore

Total number of rows: 62976

Table truncated, full table size 33562 Kbytes.




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