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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Oct 28, 2019 |
| Title |
Illumina NovaSeq 6000 (Oryza sativa) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Oryza sativa |
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| Submission date |
Oct 28, 2019 |
| Last update date |
Oct 28, 2019 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (1828)
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GSM4141754, GSM4141755, GSM4141756, GSM4141757, GSM4141758, GSM4141759
GSM4141760, GSM4815830, GSM4815831, GSM4815832, GSM4815833, GSM4815834, GSM4815835, GSM4815836, GSM4815837, GSM4815838, GSM4815839, GSM4815840, GSM4815841, GSM4815842, GSM4815843, GSM4815844, GSM4815845, GSM4815846, GSM4815847, GSM4815848, GSM4815849, GSM4815850, GSM4815851, GSM4815852, GSM4815853, GSM4815854, GSM4815855, GSM4815856, GSM4815857, GSM4815858, GSM4815859, GSM4905267, GSM4905268, GSM4905269, GSM4905270, GSM4905271, GSM4905272, GSM4949488, GSM4949489, GSM4949490, GSM4949491, GSM4949492, GSM4949493, GSM4949494, GSM4949495, GSM4949496, GSM4949497, GSM4949498, GSM4949499, GSM4949500, GSM4949501, GSM4949502, GSM4949503, GSM4949504, GSM4949505, GSM4949506, GSM4949507, GSM4949508, GSM4949509, GSM4949510, GSM4949511, GSM4949512, GSM4949513, GSM4949514, GSM4949515, GSM4949516, GSM4949517, GSM4949518, GSM4949519, GSM4949520, GSM4949521, GSM4949522, GSM4949523, GSM4949524, GSM4949525, GSM4949526, GSM4949527, GSM4949528, GSM4949529, GSM4949530, GSM4949531, GSM4949532, GSM4949533, GSM4949534, GSM4949535, GSM4949536, GSM4949537, GSM4949538, GSM4949539, GSM4949540, GSM4949541, GSM4949542, GSM4949543, GSM4949544, GSM4949545, GSM4949546, GSM4949547, GSM4949548, GSM4949549, GSM4949550, GSM4949551, GSM4949552, GSM4949553, GSM4949554, GSM4949555, GSM4949556, GSM4949557, GSM4949558, GSM4949559, GSM4949560, GSM4949561, GSM4949562, GSM4949563, GSM4949564, GSM4949565, GSM4949566, GSM4949567, GSM4949568, GSM4949569, GSM4949570, GSM4949571, GSM4949572, GSM4949573, GSM4949574, GSM4949575, GSM4949576, GSM4949577, GSM4949578, GSM4949579, GSM4949580, GSM4949581, GSM4949582, GSM4949583, GSM4949584, GSM4949585, GSM4949586, GSM4949587, GSM4949588, GSM4949589, GSM4949590, GSM4949591, GSM4949592, GSM4949593, GSM4949594, GSM4949595, GSM4949596, GSM4949597, GSM4949598, GSM4949599, GSM4949600, GSM4949601, GSM4949602, GSM4949603, GSM4949604, GSM4949605, GSM4949606, GSM4949607, GSM4949608, GSM4949609, GSM5102551, GSM5102552, GSM5102553, GSM5102554, GSM5102555, GSM5102556, GSM5102557, GSM5102558, GSM5102559, GSM5102560, GSM5102561, GSM5102562, GSM5155168, GSM5155169, GSM5155170, GSM5155171, GSM5155172, GSM5155173, GSM5155174, GSM5155175, GSM5155176, GSM5155177, GSM5155178, GSM5155179, GSM5265163, GSM5265164, GSM5265166, GSM5265168, GSM5265169, GSM5265171, GSM5360721, GSM5360722, GSM5360723, GSM5360724, GSM5389923, GSM5389924, GSM5389925, GSM5389926, GSM5389927, GSM5389928, GSM5389929, GSM5389930, GSM5389931, GSM5389932, GSM5389933, GSM5389934, GSM5389935, GSM5389936, GSM5389937, GSM5389938, GSM5389939, GSM5389940, GSM5389941, GSM5389942, GSM5389943, GSM5389944, GSM5389945, GSM5389946, GSM5421285, GSM5421286, GSM5421287, GSM5421288, GSM5511740, GSM5511741, GSM5511742, GSM5511743, GSM5511744, GSM5511745, GSM5511746, GSM5511747, GSM5511748, GSM5511749, GSM5511750, GSM5511751, GSM5616177, GSM5616178, GSM5616179, GSM5616180, GSM5616181, GSM5616182, GSM5616183, GSM5616184, GSM5616185, GSM5616186, GSM5616187, GSM5616188, GSM5616189, GSM5616190, GSM5616191, GSM5616192, GSM5616193, GSM5616194, GSM5616195, GSM5616196, GSM5616197, GSM5616198, GSM5616199, GSM5616200, GSM5616201, GSM5616202, GSM5616203, GSM5616204, GSM5616205, GSM5616206, GSM5616207, GSM5616208, GSM5616209, GSM5616210, GSM5616211, GSM5616212, GSM5616213, GSM5616214, GSM5616215, GSM5616216, GSM5616217, GSM5616218, GSM5616219, GSM5616220, GSM5616221, GSM5616222, GSM5616223, GSM5616224, GSM5616225, GSM5616226, GSM5616227, GSM5616228, GSM5616229, GSM5616230, GSM5616231, GSM5616232, GSM5616233, GSM5616234, GSM5616235, GSM5616236, GSM5616237, GSM5616238, GSM5616239, GSM5616240, GSM5616241, GSM5616242, GSM5616243, GSM5616244, GSM5616245, GSM5616246, GSM5616247, GSM5616248, GSM5616249, GSM5616250, GSM5616251, GSM5616252, GSM5616253, GSM5616254, GSM5616255, GSM5616256, GSM5616257, GSM5616258, GSM5616259, GSM5616260, GSM5616261, GSM5616262, GSM5616263, GSM5616264, GSM5616265, GSM5616266, GSM5616267, GSM5616268, GSM5616269, GSM5616270, GSM5616271, GSM5616272, GSM5616273, GSM5616274, GSM5616275, GSM5616276, GSM5616277, GSM5693203, GSM5693204, GSM5693205, GSM5693206, GSM5693207, GSM5693208, GSM5693209, GSM5693210, GSM5693211, GSM5693212, GSM5693213, GSM5693214, GSM5693215, GSM5693216, GSM5693217, GSM5693218, GSM5693219, GSM5693220, GSM5705710, GSM5705711, GSM5705712, GSM5705713, GSM5705714, GSM5705715, GSM5705716, GSM5705717, GSM5705718, GSM5705719, GSM5705720, GSM5705721, GSM5733119, GSM5733120, GSM5733121, GSM5733122, GSM5742678, GSM5742679, GSM5742680, GSM5742681, GSM5742682, GSM5742683, GSM5742684, GSM5742685, GSM5742686, GSM5742687, GSM5742688, GSM5742689, GSM5742690, GSM5742691, GSM5742692, GSM5742693, GSM5742694, GSM5742695, GSM5742696, GSM5742697, GSM5742698, GSM5742699, GSM5742700, GSM5742701, GSM5742702, GSM5742703, GSM5742704, GSM5742705, GSM5742706, GSM5742707, GSM5742708, GSM5742709, GSM5742710, GSM5742711, GSM5742712, GSM5742713, GSM5742714, GSM5742715, GSM5742716, GSM5742717, GSM5742718, GSM5742719, GSM5742720, GSM5742721, GSM5742722, GSM5742723, GSM5742724, GSM5742725, GSM5742726, GSM5742727, GSM5742728, GSM5742729, GSM5742730, GSM5742731, GSM5742732, GSM5742733, GSM5742734, GSM5742735, GSM5742736, GSM5742737, GSM5742738, GSM5742739, GSM5742740, GSM5742741, GSM5742742, GSM5742743, GSM5742744, GSM5742745, GSM5742746, GSM5742747, GSM5742748, GSM5742749, GSM5742750, GSM5742751, GSM5742752, GSM5742753, GSM5742754, GSM5742755, GSM5742756, GSM5742757, GSM5742758, GSM5742759, GSM5742760, GSM5742761, GSM5742762, GSM5742763, GSM5742764, GSM5742765, GSM5742766, GSM5742767, GSM5858565, GSM5858566, GSM5858567, GSM5858568, GSM5858569, GSM5858570, GSM5858571, GSM5858572, GSM5858573, GSM5858574, GSM5858575, GSM5858576, GSM5858577, GSM5858578, GSM5858579, GSM5858580, GSM5858581, GSM5858582, GSM5858583, GSM5858584, GSM5858585, GSM5858586, GSM5858587, GSM5858588, GSM5858589, GSM5858590, GSM5858591, GSM5858592, GSM5858593, GSM5858594, GSM5858595, GSM5858596, GSM5858597, GSM5858598, GSM5858599, GSM5858600...
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| Series (81)
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| GSE132775 |
Characterization of G-quadruplexes in the rice genome |
| GSE139445 |
OsbZIP76 interacts with OsNF-YBs and regulates endosperm cellularization in rice (Oryza sativa) |
| GSE158928 |
Weighted gene coexpression network analysis-based identification of key modules and hub genes associated with drought sensitivity in rice |
| GSE161358 |
SHORT-ROOT 1 is critical to cell division and tracheary element development in rice roots |
| GSE162311 |
The transcriptomic landscapes of rice cultivars with diverse root system architectures grown in upland field conditions [RNA-seq] |
| GSE162313 |
The transcriptomic landscapes of rice cultivars with diverse root system architectures grown in upland field conditions |
| GSE167342 |
Integrative approach for precise genotyping and transcriptomics of a salt tolerant introgression line in rice |
| GSE168650 |
RNA-seq analysis of NIL-TT2HJX and NIL-TT2HPS32 aerial organs of 12-day-old seedlings under normal and heat treatment |
| GSE173301 |
Metabolomics and Transcriptomics Reveal Key Metabolism Pathways of Giant Embryo Development in Rice |
| GSE178395 |
Transcriptomic comparative analysis of different resistance to sheath blight in rice chromosome segment substitution lines |
| GSE179596 |
ChIP-seq of OsLEC1 |
| GSE179839 |
RNA-seq and ChIP-seq of OsLEC1 |
| GSE181809 |
Chromatin-remodeling factor OsINO80 regulate H2A.Z incorporation [anti-H2A.Z & H3 ChIP-seq] |
| GSE185495 |
Comprehensive evaluation of adenine base editors induced mutations at genomic and transcriptional level [WGS] |
| GSE185496 |
Comprehensive evaluation of adenine base editors induced mutations at genomic and transcriptional level [transcriptome] |
| GSE185497 |
Comprehensive evaluation of adenine base editors induced mutations at genomic and transcriptional level |
| GSE189012 |
Genetic analysis for the Grain shape and Grain weight heterosis of a super-hybrid rice WFYT025 combination |
| GSE189665 |
Spermidine augments salt stress resilience in rice roots potentially by enhancing OsbZIP73’s RNA binding capacity |
| GSE191268 |
Temperature-sensitive sterility in rice determined by the dual role of AGO1d in phasiRNA biogenesis and function |
| GSE196048 |
Stomatal Development and Gene Expression in Rice Florets |
| GSE197144 |
Simple and Accurate Transcriptional Start Site Identification Using Smar2C2 |
| GSE197245 |
Probing in vivo RNA structure with optimized DMS-MaPseq in rice |
| GSE197401 |
search for downstream target genes of HTG3 based on RNA seq data |
| GSE198286 |
Transcriptome-wide profiling of RNA N4-cytidine acetylation in Arabidopsis thaliana and Oryza sativa |
| GSE200171 |
Chemo- versus immuno-precipitation of G-quadruplex-DNA (G4- DNA): a direct comparison of the efficiency of the antibody BG4 versus the small-molecule ligands TASQs for G4 affinity capture |
| GSE203393 |
Genome-wide profiling of H3K4me3 and H3K27me3 in rice male meiocytes using low cell number ChIP-seq |
| GSE207213 |
Effect of depletion of YTH family genes on gene expression in Nipponbera rices |
| GSE210952 |
Comparative Transcriptome Analysis of Two Rice Genotypes with Varying Tolerance to Salt Stress |
| GSE211828 |
Transcriptome-Wide Profiling of mRNA N6-Methyladenosine Modification in Rice Panicles and Flag Leaves |
| GSE212144 |
Effect of depletion of OsPIN1c, OsPIN1d, and OsPID on gene expression in leaf primordia during vegetative growth |
| GSE212676 |
Effect of depletion of OsMFT1 on gene expression in the absence and presence of salt stress during seed germination. |
| GSE213466 |
Overexpression of OsERF106MZ promotes root growth in rice seedlings by relieving the ABA-mediated inhibition of root growth |
| GSE217725 |
Effect of depletion of OsSPT5-1 on gene expression in shoot and root tissues during vegetative growth |
| GSE218565 |
A naturally de novo-evolved gene contributes to rice grain shape difference between indica and japonica |
| GSE219068 |
mDRIP-seq: a high-throughput method for R-loop mapping and quantitative assessment |
| GSE219071 |
mDRIP-seq is a high-throughput method for quantitative R-loop landscape profiling |
| GSE221542 |
The effects of various levels of drought and heat on the rice shoot transcriptome |
| GSE222671 |
Effect of Heat Stress on Gene Expression of ZH11 and grp3/grp162 Double Mutants |
| GSE222929 |
Transcriptomic and Genetic Analysis of Seed Germination Vigor under Low Temperature in Weedy Rice WR04-6 |
| GSE224234 |
A lignin-derived material improves plant nutrient bioavailability and growth through its metal chelating capacity |
| GSE225259 |
Transcriptome, Small RNA, and Degradome Sequencing Reveals the Roles of MicroRNAs in Response to High Night Temperature Stress at the Filling Stage of Rice |
| GSE225476 |
A specific protective mechanism against chloroplast photo-reactive oxygen species in phosphate-starved rice plants [ChIP-seq] |
| GSE225478 |
A specific protective mechanism against chloroplast photo-reactive oxygen species in phosphate-starved rice plants |
| GSE228728 |
Changes in the expression pattern of OsWUS negatively regulate plant stature and panicle development in rice |
| GSE229200 |
Genome-wide association study and transcriptome analysis discover novel genes for bacterial leaf streak resistance in rice |
| GSE229334 |
Mass spectrometry-based proteomic landscape of rice reveals a post-transcriptional regulatory role of N6-methyladenosine |
| GSE229960 |
Upstream regulator of genomic imprinting in rice is a small RNA-associated chromatin remodeler [targeted bisulfite PCR] |
| GSE229961 |
Upstream regulator of genomic imprinting in rice is a small RNA-associated chromatin remodeler |
| GSE230463 |
The Effects of Low Temperature on the Global Increase of N6-methyldeoxyadenosine in Arabidopsis thaliana and Rice |
| GSE231856 |
Rice amino acid transporter OsMP1 is involved in amino acid homeostasis and mediates broad-spectrum resistance to blast fungus and bacterial blight through upregulating JA signaling pathway |
| GSE232269 |
Genome-wide analysis of the histone modification H3K9ac in Oryza sativa infested with Spodoptera frugiperda |
| GSE232347 |
ISRH-seq: a sensitive and robust methodology for R-loop profiling |
| GSE232449 |
RNA-sequencing reveals differentially expressed rice genes functionally associated with defense against brown planthopper in NILs pyramiding BPH14 and BPH15 |
| GSE232522 |
Polysome bound mRNA Seq analysis of tolerant (APO) and susceptible (IR64) variety of Oryza sativa cv. Indica under 50% drought |
| GSE233456 |
Life-cycle multiomics of rice shoots reveals growth stage-specific effects of drought stress and time-lag drought responses |
| GSE233939 |
OsbHLH002-OSH1 module orchetrates the secondary cell wall formation in rice (ChIP-Seq) |
| GSE237123 |
RNA-seq of rice roots treated with or without Fo10 under Cd |
| GSE243804 |
aChIP: efficient, sensitive, robust ChIP-seq for economically important plant organs [ChIP-Seq] |
| GSE243806 |
aChIP: efficient, sensitive, robust ChIP-seq for economically important plant organs |
| GSE244009 |
An improved terminal ribose-modified small RNA sequencing (TRM-sRNA-seq) reveals novel features of miRNA modification and identifies HEN1-independent 2’-O-modified sRNAs derived from tRNAs |
| GSE245213 |
Characterization of rice-yellow stem borer interaction |
| GSE246145 |
Oryza sativa ssp. japonica (Kitaake) stressed by cold stress (5°C, 24 h) targeted to leaves (C-L), roots (C-R) or the whole plant (C), and exposed to previous acclimation (15°C, 12 h) |
| GSE247749 |
The OsSRO1c-OsDREB2B complex senses low temperatures to confer cold tolerance via direct regulation of COLD1 in rice |
| GSE248248 |
Transcriptome profile of rice genotypes ZH11 and Oseds1 by inoculation with Xanthomonas oryzae pv. oryzae |
| GSE248919 |
Single nuclei sequencing reveals C4 photosynthesis is based on rewiring of ancestral cell identity networks |
| GSE250072 |
Oxidative burst causes loss of tapetal Ubisch body and male sterility in rice |
| GSE251706 |
Single-cell RNA-seq of Kitaake rice roots grown in gel, and non-compacted soil conditions |
| GSE252040 |
A cis-regulatory atlas of rice single cells |
| GSE260645 |
Wound induced small-peptide mediated signalling cascade regulated by OsPSKR, dictates balance between growth and defense in rice |
| GSE260646 |
Wound induced small-peptide mediated signalling cascade dictates growth vs defense decision in rice |
| GSE260647 |
Upstream regulator of genomic imprinting in rice is a small RNA-associated chromatin remodeler [PCR_product_deep_sequencing] |
| GSE260648 |
Upstream regulator of genomic imprinting in rice is a small RNA-associated chromatin remodeler [bisulfite_PCR] |
| GSE260649 |
Upstream regulator of genomic imprinting in rice is a small RNA-associated chromatin remodeler [ChIP_seq] |
| GSE260651 |
Upstream regulator of genomic imprinting in rice is a small RNA-associated chromatin remodeler [Bisulfite_seq] |
| GSE262371 |
Transcriptomic and metabolomic reveal OsCOI2 as the jasmonate-receptor master switch in rice root |
| GSE263431 |
ABERRANT PANICLE ORGANIZATION2 controls multiple steps in panicle formation through common direct-target genes |
| GSE269765 |
Zaxinone Synthase Overexpression Modulates Rice Physiology and Metabolism, Enhancing Nutrient Uptake, Growth, and Productivity |
| GSE270782 |
The rice anther transcriptomes responded to low temperature [RNA-seq] |
| GSE278202 |
Identification and analysis of microRNAs responsible for brown planthopper resistance in BPH14/BPH15 pyramiding rice |
| GSE278294 |
Co-cultivating rice plants with Azolla filiculoides modifies root architecture and timing of developmental stages |
| GSE278501 |
Land plant-specific H3K27 methyltransferases ATXR5 and ATXR6 control plant development and stress responses [Rice RNA-seq] |
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| Supplementary data files not provided |
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