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Status
Public on Jan 31, 2023
Title
Illumina EUChip60k SNP array
Technology type
oligonucleotide beads
Distribution
custom-commercial
Organism
Eucalyptus urophylla Manufacturer
Illumina
Manufacture protocol
see Illumina web site
Description
Detailed info on the SNP contained in this chip (genome location, target SNP, flanking sequence) in Silva-Junior et al. (2015). See Table S3 Infinium SNP probe sequence, ADT score and genome coordinate of the 60 904 SNPs of the EUChip60k.
Submission date
Feb 10, 2020
Last update date
Jan 31, 2023
Contact name
Huixiao Yang
E-mail(s)
yanghx1111@163.com Phone
15989204715
Organization name
Guangdong Academy of Forestry
Street address
No 233 1st Guangshan Road
City
Guangzhou
State/province
Guangdong
ZIP/Postal code
510520
Country
China
Samples (382)
GSM4305753 , GSM4305754 , GSM4305755 , GSM4305756 , GSM4305757 , GSM4305758
GSM4305759 ,
GSM4305760 ,
GSM4305761 ,
GSM4305762 ,
GSM4305763 ,
GSM4305764 ,
GSM4305765 ,
GSM4305766 ,
GSM4305767 ,
GSM4305768 ,
GSM4305769 ,
GSM4305770 ,
GSM4305771 ,
GSM4305772 ,
GSM4305773 ,
GSM4305774 ,
GSM4305775 ,
GSM4305776 ,
GSM4305777 ,
GSM4305778 ,
GSM4305779 ,
GSM4305780 ,
GSM4305781 ,
GSM4305782 ,
GSM4305783 ,
GSM4305784 ,
GSM4305785 ,
GSM4305786 ,
GSM4305787 ,
GSM4305788 ,
GSM4305789 ,
GSM4305790 ,
GSM4305791 ,
GSM4305792 ,
GSM4305793 ,
GSM4305794 ,
GSM4305795 ,
GSM4305796 ,
GSM4305797 ,
GSM4305798 ,
GSM4305799 ,
GSM4305800 ,
GSM4305801 ,
GSM4305802 ,
GSM4305803 ,
GSM4305804 ,
GSM4305805 ,
GSM4305806 ,
GSM4305807 ,
GSM4305808 ,
GSM4305809 ,
GSM4305810 ,
GSM4305811 ,
GSM4305812 ,
GSM4305813 ,
GSM4305814 ,
GSM4305815 ,
GSM4305816 ,
GSM4305817 ,
GSM4305818 ,
GSM4305819 ,
GSM4305820 ,
GSM4305821 ,
GSM4305822 ,
GSM4305823 ,
GSM4305824 ,
GSM4305825 ,
GSM4305826 ,
GSM4305827 ,
GSM4305828 ,
GSM4305829 ,
GSM4305830 ,
GSM4305831 ,
GSM4305832 ,
GSM4305833 ,
GSM4305834 ,
GSM4305835 ,
GSM4305836 ,
GSM4305837 ,
GSM4305838 ,
GSM4305839 ,
GSM4305840 ,
GSM4305841 ,
GSM4305842 ,
GSM4305843 ,
GSM4305844 ,
GSM4305845 ,
GSM4305846 ,
GSM4305847 ,
GSM4305848 ,
GSM4305849 ,
GSM4305850 ,
GSM4305851 ,
GSM4305852 ,
GSM4305853 ,
GSM4305854 ,
GSM4305855 ,
GSM4305856 ,
GSM4305857 ,
GSM4305858 ,
GSM4305859 ,
GSM4305860 ,
GSM4305861 ,
GSM4305862 ,
GSM4305863 ,
GSM4305864 ,
GSM4305865 ,
GSM4305866 ,
GSM4305867 ,
GSM4305868 ,
GSM4305869 ,
GSM4305870 ,
GSM4305871 ,
GSM4305872 ,
GSM4305873 ,
GSM4305874 ,
GSM4305875 ,
GSM4305876 ,
GSM4305877 ,
GSM4305878 ,
GSM4305879 ,
GSM4305880 ,
GSM4305881 ,
GSM4305882 ,
GSM4305883 ,
GSM4305884 ,
GSM4305885 ,
GSM4305886 ,
GSM4305887 ,
GSM4305888 ,
GSM4305889 ,
GSM4305890 ,
GSM4305891 ,
GSM4305892 ,
GSM4305893 ,
GSM4305894 ,
GSM4305895 ,
GSM4305896 ,
GSM4305897 ,
GSM4305898 ,
GSM4305899 ,
GSM4305900 ,
GSM4305901 ,
GSM4305902 ,
GSM4305903 ,
GSM4305904 ,
GSM4305905 ,
GSM4305906 ,
GSM4305907 ,
GSM4305908 ,
GSM4305909 ,
GSM4305910 ,
GSM4305911 ,
GSM4305912 ,
GSM4305913 ,
GSM4305914 ,
GSM4305915 ,
GSM4305916 ,
GSM4305917 ,
GSM4305918 ,
GSM4305919 ,
GSM4305920 ,
GSM4305921 ,
GSM4305922 ,
GSM4305923 ,
GSM4305924 ,
GSM4305925 ,
GSM4305926 ,
GSM4305927 ,
GSM4305928 ,
GSM4305929 ,
GSM4305930 ,
GSM4305931 ,
GSM4305932 ,
GSM4305933 ,
GSM4305934 ,
GSM4305935 ,
GSM4305936 ,
GSM4305937 ,
GSM4305938 ,
GSM4305939 ,
GSM4305940 ,
GSM4305941 ,
GSM4305942 ,
GSM4305943 ,
GSM4305944 ,
GSM4305945 ,
GSM4305946 ,
GSM4305947 ,
GSM4305948 ,
GSM4305949 ,
GSM4305950 ,
GSM4305951 ,
GSM4305952 ,
GSM4305953 ,
GSM4305954 ,
GSM4305955 ,
GSM4305956 ,
GSM4305957 ,
GSM4305958 ,
GSM4305959 ,
GSM4305960 ,
GSM4305961 ,
GSM4305962 ,
GSM4305963 ,
GSM4305964 ,
GSM4305965 ,
GSM4305966 ,
GSM4305967 ,
GSM4305968 ,
GSM4305969 ,
GSM4305970 ,
GSM4305971 ,
GSM4305972 ,
GSM4305973 ,
GSM4305974 ,
GSM4305975 ,
GSM4305976 ,
GSM4305977 ,
GSM4305978 ,
GSM4305979 ,
GSM4305980 ,
GSM4305981 ,
GSM4305982 ,
GSM4305983 ,
GSM4305984 ,
GSM4305985 ,
GSM4305986 ,
GSM4305987 ,
GSM4305988 ,
GSM4305989 ,
GSM4305990 ,
GSM4305991 ,
GSM4305992 ,
GSM4305993 ,
GSM4305994 ,
GSM4305995 ,
GSM4305996 ,
GSM4305997 ,
GSM4305998 ,
GSM4305999 ,
GSM4306000 ,
GSM4306001 ,
GSM4306002 ,
GSM4306003 ,
GSM4306004 ,
GSM4306005 ,
GSM4306006 ,
GSM4306007 ,
GSM4306008 ,
GSM4306009 ,
GSM4306010 ,
GSM4306011 ,
GSM4306012 ,
GSM4306013 ,
GSM4306014 ,
GSM4306015 ,
GSM4306016 ,
GSM4306017 ,
GSM4306018 ,
GSM4306019 ,
GSM4306020 ,
GSM4306021 ,
GSM4306022 ,
GSM4306023 ,
GSM4306024 ,
GSM4306025 ,
GSM4306026 ,
GSM4306027 ,
GSM4306028 ,
GSM4306029 ,
GSM4306030 ,
GSM4306031 ,
GSM4306032 ,
GSM4306033 ,
GSM4306034 ,
GSM4306035 ,
GSM4306036 ,
GSM4306037 ,
GSM4306038 ,
GSM4306039 ,
GSM4306040 ,
GSM4306041 ,
GSM4306042 ,
GSM4306043 ,
GSM4306044 ,
GSM4306045 ,
GSM4306046 ,
GSM4306047 ,
GSM4306048 ,
GSM4306049 ,
GSM4306050 ,
GSM4306051 ,
GSM4306052 ,
GSM4306053 ,
GSM4306054 ,
GSM4306055 ,
GSM4306056 ,
GSM4306057 ,
GSM4306058 ,
GSM4306059 ,
GSM4306060 ,
GSM4306061 ,
GSM4306062 ,
GSM4306063 ,
GSM4306064 ,
GSM4306065 ,
GSM4306066 ,
GSM4306067 ,
GSM4306068 ,
GSM4306069 ,
GSM4306070 ,
GSM4306071 ,
GSM4306072 ,
GSM4306073 ,
GSM4306074 ,
GSM4306075 ,
GSM4306076 ,
GSM4306077 ,
GSM4306078 ,
GSM4306079 ,
GSM4306080 ,
GSM4306081 ,
GSM4306082 ,
GSM4306083 ,
GSM4306084 ,
GSM4306085 ,
GSM4306086 ,
GSM4306087 ,
GSM4306088 ,
GSM4306089 ,
GSM4306090 ,
GSM4306091 ,
GSM4306092 ,
GSM4306093 ,
GSM4306094 ,
GSM4306095 ,
GSM4306096 ,
GSM4306097 ,
GSM4306098 ,
GSM4306099 ,
GSM4306100 ,
GSM4306101 ,
GSM4306102 ,
GSM4306103 ,
GSM4306104 ,
GSM4306105 ,
GSM4306106 ,
GSM4306107 ,
GSM4306108 ,
GSM4306109 ,
GSM4306110 ,
GSM4306111 ,
GSM4306112 ,
GSM4306113 ,
GSM4306114 ,
GSM4306115 ,
GSM4306116 ,
GSM4306117 ,
GSM4306118 ,
GSM4306119 ,
GSM4306120 ,
GSM4306121 ,
GSM4306122 ,
GSM4306123 ,
GSM4306124 ,
GSM4306125 ,
GSM4306126 ,
GSM4306127 ,
GSM4306128 ,
GSM4306129 ,
GSM4306130 ,
GSM4306131 ,
GSM4306132 ,
GSM4306133 ,
GSM4306134 Series (1)
GSE145072 Genome-wide assessment of population structure and genetic diversity of Eucalyptus urophylla based on a multi-species single nucleotide polymorphism chip analysis
Data table header descriptions ID CHROMOSOME POSITION GenTrain Score SNP ILMN Strand Customer Strand NormID
Data table ID CHROMOSOME POSITION GenTrain Score SNP ILMN Strand Customer Strand NormID EuBR01s10000700A3B0C1D40E0
SCAFFOLD_1
10000700
0.7047
[A/G]
TOP
TOP
0
EuBR01s10015344A4B1C1D40E0
SCAFFOLD_1
10015344
0.5384
[A/G]
TOP
BOT
0
EuBR01s10031880A2B0C1D40E0
SCAFFOLD_1
10031880
0.5456
[A/G]
TOP
BOT
0
EuBR01s10031880A2B0C1D40E0rep1
SCAFFOLD_1
10031880
0.5607
[A/G]
TOP
BOT
0
EuBR01s10061249A3B1C1D40E0
SCAFFOLD_1
10061249
0.5991
[T/C]
BOT
BOT
0
EuBR01s10066731A3B0C1D60E1
SCAFFOLD_1
10066731
0.8355
[A/G]
TOP
BOT
0
EuBR01s10069500A2B0C1D30E1
SCAFFOLD_1
10069500
0.8621
[A/C]
TOP
BOT
0
EuBR01s10070352A2B0C1D50E1
SCAFFOLD_1
10070352
0.8805
[A/G]
TOP
TOP
0
EuBR01s10084396A1B0C1D60E1
SCAFFOLD_1
10084396
0.8774
[A/G]
TOP
TOP
0
EuBR01s10091486A2B0C1D60E1
SCAFFOLD_1
10091486
0.7431
[A/G]
TOP
BOT
0
EuBR01s10091639A3B0C1D30E1
SCAFFOLD_1
10091639
0.7415
[T/C]
BOT
TOP
0
EuBR01s10091975A4B0C1D60E1
SCAFFOLD_1
10091975
0.7183
[A/G]
TOP
BOT
0
EuBR01s10112297A2B0C1D30E1
SCAFFOLD_1
10112297
0.774
[T/C]
BOT
BOT
0
EuBR01s10112327A1B0C1D30E1
SCAFFOLD_1
10112327
0.5481
[A/G]
TOP
TOP
0
EuBR01s10116548A2B0C1D60E1
SCAFFOLD_1
10116548
0.9072
[A/G]
TOP
BOT
0
EuBR01s10128885A1B0C1D60E1
SCAFFOLD_1
10128885
0.8241
[A/C]
TOP
TOP
0
EuBR01s10128961A2B0C1D60E1
SCAFFOLD_1
10128961
0.9168
[T/C]
BOT
BOT
0
EuBR01s10131985A1B0C1D60E1
SCAFFOLD_1
10131985
0.7663
[A/G]
TOP
BOT
0
EuBR01s10159472A2B0C1D30E1
SCAFFOLD_1
10159472
0.915
[A/G]
TOP
BOT
0
EuBR01s10174947A1B0C1D40E1
SCAFFOLD_1
10174947
0.9184
[T/C]
BOT
BOT
0
64639 4347 Kbytes .Supplementary data files not provided
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