NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL28213 Query DataSets for GPL28213
Status Public on Mar 04, 2020
Title GeoChip 3.0 [Probe-level version]
Technology type spotted oligonucleotide
Distribution custom-commercial
Organisms Bacteria; Archaea; Fungi; Viruses
Manufacturer Institute for Environmental Genomics
Manufacture protocol http://ou.edu/ieg
 
 
Submission date Mar 03, 2020
Last update date Mar 04, 2020
Contact name Stefano MOCALI
E-mail(s) stefano.mocali@crea.gov.it
Organization name CREA
Department AA
Street address VIA di Lanciola 12/a
City FIRENZE
State/province FI
ZIP/Postal code 50125
Country Italy
 
Samples (6) GSM4376775, GSM4376776, GSM4376777, GSM4376778, GSM4376779, GSM4376780
Series (1)
GSE146289 Microbial communities of vineyard BRO11-BRO12 soils (GeoChip)

Data table header descriptions
ID
PT_GI Genbank ID; GenBank accession number of the protein
Gene Gene name
Organism Name of the organism
Gene_category Gene category
Subcategory1 Gene sub-category 1
Subcategory2 Gene sub-category 2
Lineage Taxonomic definition of the gene source
SPOT_ID

Data table
ID PT_GI Gene Organism Gene_category Subcategory1 Subcategory2 Lineage SPOT_ID
88814759 88814759 SMR_antibiotics marine actinobacterium PHSC20C1 Antibiotic resistance transporter superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;
229375154 229375154 SMR_antibiotics Helicobacter winghamensis ATCC BAA-430 Antibiotic resistance transporter superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter winghamensis;
258638683 258638683 Mex Pantoea sp. At-9b Antibiotic resistance transporter superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Pantoea;
240172194 240172194 B_lactamase_C Mycobacterium kansasii ATCC 12478 Antibiotic resistance Beta-lactamases superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium kansasii;
254353366 254353366 Mex Legionella drancourtii LLAP12 Antibiotic resistance transporter superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Legionellales;family:Legionellaceae;genus:Legionella;species:Legionella drancourtii;
221158954 221158954 SMR_antibiotics Rhodobacter sphaeroides KD131 Antibiotic resistance transporter superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Rhodobacter;species:Rhodobacter sphaeroides;
2062565 2062565 B_lactamase_A Burkholderia cepacia Antibiotic resistance Beta-lactamases superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Burkholderia;
167644962 167644962 B_lactamase_A Caulobacter sp. K31 Antibiotic resistance Beta-lactamases superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Caulobacterales;family:Caulobacteraceae;genus:Caulobacter;
239523555 239523555 SMR_antibiotics Helicobacter pullorum MIT 98-5489 Antibiotic resistance transporter superkingdom:Bacteria;phylum:Proteobacteria;class:Epsilonproteobacteria;order:Campylobacterales;family:Helicobacteraceae;genus:Helicobacter;species:Helicobacter pullorum;
214028433 214028433 Tet Ruegeria sp. R11 Antibiotic resistance other superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhodobacterales;family:Rhodobacteraceae;genus:Ruegeria;
225162337 225162337 Tet Clostridium hylemonae DSM 15053 Antibiotic resistance other superkingdom:Bacteria;phylum:Firmicutes;class:Clostridia;order:Clostridiales;family:Clostridiaceae;genus:Clostridium;species:Clostridium hylemonae;
119957138 119957138 SMR_antibiotics Mycobacterium vanbaalenii PYR-1 Antibiotic resistance transporter superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium vanbaalenii;
166862456 166862456 SMR_antibiotics Pseudomonas putida GB-1 Antibiotic resistance transporter superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Pseudomonadales;family:Pseudomonadaceae;genus:Pseudomonas;species:Pseudomonas putida;
72119125 72119125 MFS_antibiotic Ralstonia eutropha JMP134 Antibiotic resistance transporter superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus pinatubonensis;
227342326 227342326 Mex Rhizobium sp. NGR234 Antibiotic resistance transporter superkingdom:Bacteria;phylum:Proteobacteria;class:Alphaproteobacteria;order:Rhizobiales;family:Rhizobiaceae;genus:Sinorhizobium;species:Sinorhizobium fredii;
16200253 16200253 B_lactamase_C Buttiauxella sp. BTN01 Antibiotic resistance Beta-lactamases superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Buttiauxella;
178465698 178465698 SMR_antibiotics Streptomyces griseus subsp. griseus NBRC 13350 Antibiotic resistance transporter superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Streptomycetaceae;genus:Streptomyces;species:Streptomyces griseus;
38488395 38488395 B_lactamase_C Citrobacter murliniae Antibiotic resistance Beta-lactamases superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Citrobacter;
41398045 41398045 SMR_antibiotics Mycobacterium avium subsp. paratuberculosis K-10 Antibiotic resistance transporter superkingdom:Bacteria;phylum:Actinobacteria;class:Actinobacteria;order:Actinomycetales;family:Mycobacteriaceae;genus:Mycobacterium;species:Mycobacterium avium;
14318319 14318319 B_lactamase_C Escherichia coli Antibiotic resistance Beta-lactamases superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Escherichia;

Total number of rows: 24675

Table truncated, full table size 5505 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap