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Platform GPL2876 Query DataSets for GPL2876
Status Public on Sep 24, 2005
Title Agilent-012799 Mouse Developmental Microarray 44K G2519A Option 002 (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G2519A Option 002
 
Description
The Mouse Development Oligo Microarray 44K array represents the first commercial whole mouse genome microarray based on the NIA (National Institute on Aging) Mouse Gene Index, which is optimized for stem cell and developmental research.

Arrays of this design have barcodes that begin with 16012799 or 2512799.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

*** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7273.
 
Submission date Sep 23, 2005
Last update date Jan 17, 2013
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (19) GSM296228, GSM296229, GSM296230, GSM296231, GSM296232, GSM296233 
Series (1)
GSE11661 Cardiac muscle ring finger-1 increases susceptibility to heart failure by inhibiting creatine kinase activity in vivo
Relations
Alternative to GPL7273
Alternative to GPL11531

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME Name
SPOT_ID Spot identifier
GB_ACC GenBankAccession
CONTROL_TYPE Control type
GENE_SYMBOL Gene Symbol
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs

Data table
ID COL ROW NAME SPOT_ID GB_ACC CONTROL_TYPE GENE_SYMBOL ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID
1 103 430 BrightCorner BrightCorner pos
2 103 428 NegativeControl NegativeControl neg
3 103 426 U043269 A_66_P125029 NM_021524 FALSE Pbef1 ucluster4|U043269|ref|NM_021524|gb|AF234625|gb|AK004117|gb|AK086415|gb|AY679720|gb|BC004059|gb|BC018358 chr12:27869469-27869528 Mm|12qA2 pre-B-cell colony-enhancing factor 1 GO:0016740(transferase activity)|GO:0016757(transferase activity, transferring glycosyl groups)
4 103 424 U233607 A_66_P122529 AK008790 FALSE Ramp2 ucluster4|U233607|gb|AK008790|gb|AK009681|gb|AK019083|gb|AK020134|gb|AK028133|gb|AK084336|gb|AK086443|gb|AK088913|gb|BC004722 chr19:5590971-5591030 Mm|19qA receptor (calcitonin) activity modifying protein 2 GO:0006810(transport)|GO:0006886(intracellular protein transport)|GO:0007186(G-protein coupled receptor protein signaling pathway)|GO:0008277(regulation of G-protein coupled receptor protein signaling pathway)|GO:0005615(extracellular space)|GO:0016021(integral to membrane)|GO:0004872(receptor activity)|GO:0008565(protein transporter activity)|GO:0015027(coreceptor, soluble ligand activity)
5 103 422 U037760 A_66_P123649 NM_028476 FALSE 2610110G12Rik ucluster4|U037760|ref|NM_028476|gb|AK002569|gb|AK011350|gb|AK011750|gb|AK011838|gb|AK014265|gb|AK028297|gb|AK034725|gb|AK042804 chr17:34409666-34410154 Mm|17qB1 RIKEN cDNA 2610110G12 gene GO:0008415(acyltransferase activity)|GO:0016740(transferase activity)
6 103 420 U030379 A_66_P121187 AK043533 FALSE ucluster4|U030379|gb|AK043533 chr8:123147715-123147774 Mm|8qE2 Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830006H14 product:unclassifiable, full insert sequence.
7 103 418 Pro25G Pro25G pos
8 103 416 U002248 A_66_P108681 NM_146448 FALSE Olfr1317 ucluster4|U002248|ref|NM_146448 chr2:112033695-112033754 Mm|2qE3 olfactory receptor 1317 GO:0007186(G-protein coupled receptor protein signaling pathway)|GO:0007608(perception of smell)|GO:0016021(integral to membrane)|GO:0004872(receptor activity)|GO:0004930(G-protein coupled receptor activity)|GO:0004984(olfactory receptor activity)
9 103 414 A_66_P127908 A_66_P127908 FALSE
10 103 412 U002746 A_66_P112956 XM_149230 FALSE 1700060C20Rik ucluster4|U002746|ref|XM_149230|gb|AK006839 chr2:158257498-158257557 Mm|2qH1 RIKEN cDNA 1700060C20 gene
11 103 410 E1A_r60_a20 E1A_r60_a20 pos
12 103 408 U014161 A_66_P101510 AK018308 FALSE 6530401F13Rik ucluster4|U014161|gb|AK018308 chr12:76858658-76858717 Mm|12qC3 RIKEN cDNA 6530401F13 gene
13 103 406 U042346 A_66_P104062 XM_130428 FALSE 2310043D08Rik ucluster4|U042346|ref|XM_130428|gb|AK009772|gb|AK017750|gb|AK033132 chr2:118850576-118850635 Mm|2qE5 RIKEN cDNA 2310043D08 gene
14 103 404 Pro25G Pro25G pos
15 103 402 U007339 A_66_P111898 XM_289906 FALSE Jarid1a ucluster4|U007339|ref|XM_289906|ref|XM_357666|ref|XM_359326|gb|AK035270|gb|AK040260|gb|AK046187|gb|BC010717|gb|BC011506|gb|BC022581 chr6:120805335-120805984 Mm|6qF1 jumonji, AT rich interactive domain 1A (Rbp2 like) GO:0006355(regulation of transcription, DNA-dependent)|GO:0005622(intracellular)|GO:0003677(DNA binding)
16 103 400 U007616 A_66_P115274 NM_172894 FALSE B430201G11Rik ucluster4|U007616|ref|NM_172894|gb|AK075825|gb|AK080891|gb|BC053076 chr7_random:11268406-11268597 RIKEN cDNA B430201G11 gene
17 103 398 U194302 A_66_P128773 BC027567 FALSE ucluster4|U194302|gb|BC027567 chr12:76795308-76795367 Mm|12qC3 Mus musculus, clone IMAGE:3472070, mRNA.
18 103 396 U030380 A_66_P103150 XM_134542 FALSE 1700054N08Rik ucluster4|U030380|ref|XM_134542|gb|AK006786|gb|AK082235|gb|AK086180|gb|BC024705|gb|BC036300 chr8:123240630-123240689 Mm|8qE2 RIKEN cDNA 1700054N08 gene
19 103 394 U082785 A_66_P134349 NM_007543 FALSE Ceacam2 ucluster4|U082785|ref|NM_007543|ref|NM_011926|gb|AF101164|gb|AK085749|gb|BC016891|gb|BC024320|gb|M61907|gb|M77196|gb|M96934 chr7:14264702-14265528 Mm|7qA2 CEA-related cell adhesion molecule 2 GO:0000004(biological_process unknown)|GO:0009986(cell surface)|GO:0005554(molecular_function unknown)|GO:0016021(integral to membrane)|GO:0004872(receptor activity)
20 103 392 U133825 A_66_P111038 FALSE ucluster4|U133825 chr7:16939477-16939536 Mm|7qA3

Total number of rows: 44290

Table truncated, full table size 10591 Kbytes.




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