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Status
Public on Dec 31, 2020
Title
ThermoFisher Human Single Genomechanics PCR Array
Technology type
RT-PCR
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
ThermoFisher
Manufacture protocol
A list of genes of interest was curated from various published sources and experimental comparisons of gene expression between cell lines of varying metastatic potential. Designs for these 96 genes of interest were collected from previously published studies, choosing primer sets that were expected to produce a product between 70 and 310 base pairs long as predicted by the Basic Local Alignment Search Tool (BLAST).
Description
PCR assay
Submission date
Jul 08, 2020
Last update date
Dec 31, 2020
Contact name
Katherine Monnet Young
E-mail(s)
katie.young@gatech.edu Organization name
Georgia Institute of Technology
Department
Biomedical Engineering
Lab
Todd Sulchek
Street address
315 Ferst Dr. NW
City
Atlanta
State/province
GA
ZIP/Postal code
30318
Country
USA
Samples (302)
GSM4662186 , GSM4662187 , GSM4662188 , GSM4662189 , GSM4662190 , GSM4662191
GSM4662192 ,
GSM4662193 ,
GSM4662194 ,
GSM4662195 ,
GSM4662196 ,
GSM4662197 ,
GSM4662198 ,
GSM4662199 ,
GSM4662200 ,
GSM4662201 ,
GSM4662202 ,
GSM4662203 ,
GSM4662204 ,
GSM4662205 ,
GSM4662206 ,
GSM4662207 ,
GSM4662208 ,
GSM4662209 ,
GSM4662210 ,
GSM4662211 ,
GSM4662212 ,
GSM4662213 ,
GSM4662214 ,
GSM4662215 ,
GSM4662216 ,
GSM4662217 ,
GSM4662218 ,
GSM4662219 ,
GSM4662220 ,
GSM4662221 ,
GSM4662222 ,
GSM4662223 ,
GSM4662224 ,
GSM4662225 ,
GSM4662226 ,
GSM4662227 ,
GSM4662228 ,
GSM4662229 ,
GSM4662230 ,
GSM4662231 ,
GSM4662232 ,
GSM4662233 ,
GSM4662234 ,
GSM4662235 ,
GSM4662236 ,
GSM4662237 ,
GSM4662238 ,
GSM4662239 ,
GSM4662240 ,
GSM4662241 ,
GSM4662242 ,
GSM4662243 ,
GSM4662244 ,
GSM4662245 ,
GSM4662246 ,
GSM4662247 ,
GSM4662248 ,
GSM4662249 ,
GSM4662250 ,
GSM4662251 ,
GSM4662252 ,
GSM4662253 ,
GSM4662254 ,
GSM4662255 ,
GSM4662256 ,
GSM4662257 ,
GSM4662258 ,
GSM4662259 ,
GSM4662260 ,
GSM4662261 ,
GSM4662262 ,
GSM4662263 ,
GSM4662264 ,
GSM4662265 ,
GSM4662266 ,
GSM4662267 ,
GSM4662268 ,
GSM4662269 ,
GSM4662270 ,
GSM4662271 ,
GSM4662272 ,
GSM4662273 ,
GSM4662274 ,
GSM4662275 ,
GSM4662276 ,
GSM4662277 ,
GSM4662278 ,
GSM4662279 ,
GSM4662280 ,
GSM4662281 ,
GSM4662282 ,
GSM4662283 ,
GSM4662284 ,
GSM4662285 ,
GSM4662286 ,
GSM4662287 ,
GSM4662288 ,
GSM4662289 ,
GSM4662290 ,
GSM4662291 ,
GSM4662292 ,
GSM4662293 ,
GSM4662294 ,
GSM4662295 ,
GSM4662296 ,
GSM4662297 ,
GSM4662298 ,
GSM4662299 ,
GSM4662300 ,
GSM4662301 ,
GSM4662302 ,
GSM4662303 ,
GSM4662304 ,
GSM4662305 ,
GSM4662306 ,
GSM4662307 ,
GSM4662308 ,
GSM4662309 ,
GSM4662310 ,
GSM4662311 ,
GSM4662312 ,
GSM4662313 ,
GSM4662314 ,
GSM4662315 ,
GSM4662316 ,
GSM4662317 ,
GSM4662318 ,
GSM4662319 ,
GSM4662320 ,
GSM4662321 ,
GSM4662322 ,
GSM4662323 ,
GSM4662324 ,
GSM4662325 ,
GSM4662326 ,
GSM4662327 ,
GSM4662328 ,
GSM4662329 ,
GSM4662330 ,
GSM4662331 ,
GSM4662332 ,
GSM4662333 ,
GSM4662334 ,
GSM4662335 ,
GSM4662336 ,
GSM4662337 ,
GSM4662338 ,
GSM4662339 ,
GSM4662340 ,
GSM4662341 ,
GSM4662342 ,
GSM4662343 ,
GSM4662344 ,
GSM4662345 ,
GSM4662346 ,
GSM4662347 ,
GSM4662348 ,
GSM4662349 ,
GSM4662350 ,
GSM4662351 ,
GSM4662352 ,
GSM4662353 ,
GSM4662354 ,
GSM4662355 ,
GSM4662356 ,
GSM4662357 ,
GSM4662358 ,
GSM4662359 ,
GSM4662360 ,
GSM4662361 ,
GSM4662362 ,
GSM4662363 ,
GSM4662364 ,
GSM4662365 ,
GSM4662366 ,
GSM4662367 ,
GSM4662368 ,
GSM4662369 ,
GSM4662370 ,
GSM4662371 ,
GSM4662372 ,
GSM4662373 ,
GSM4662374 ,
GSM4662375 ,
GSM4662376 ,
GSM4662377 ,
GSM4662378 ,
GSM4662379 ,
GSM4662380 ,
GSM4662381 ,
GSM4662382 ,
GSM4662383 ,
GSM4662384 ,
GSM4662385 ,
GSM4662386 ,
GSM4662387 ,
GSM4662388 ,
GSM4662389 ,
GSM4662390 ,
GSM4662391 ,
GSM4662392 ,
GSM4662393 ,
GSM4662394 ,
GSM4662395 ,
GSM4662396 ,
GSM4662397 ,
GSM4662398 ,
GSM4662399 ,
GSM4662400 ,
GSM4662401 ,
GSM4662402 ,
GSM4662403 ,
GSM4662404 ,
GSM4662405 ,
GSM4662406 ,
GSM4662407 ,
GSM4662408 ,
GSM4662409 ,
GSM4662410 ,
GSM4662411 ,
GSM4662412 ,
GSM4662413 ,
GSM4662414 ,
GSM4662415 ,
GSM4662416 ,
GSM4662417 ,
GSM4662418 ,
GSM4662419 ,
GSM4662420 ,
GSM4662421 ,
GSM4662422 ,
GSM4662423 ,
GSM4662424 ,
GSM4662425 ,
GSM4662426 ,
GSM4662427 ,
GSM4662428 ,
GSM4662429 ,
GSM4662430 ,
GSM4662431 ,
GSM4662432 ,
GSM4662433 ,
GSM4662434 ,
GSM4662435 ,
GSM4662436 ,
GSM4662437 ,
GSM4662438 ,
GSM4662439 ,
GSM4662440 ,
GSM4662441 ,
GSM4662442 ,
GSM4662443 ,
GSM4662444 ,
GSM4662445 ,
GSM4662446 ,
GSM4662447 ,
GSM4662448 ,
GSM4662449 ,
GSM4662450 ,
GSM4662451 ,
GSM4662452 ,
GSM4662453 ,
GSM4662454 ,
GSM4662455 ,
GSM4662456 ,
GSM4662457 ,
GSM4662458 ,
GSM5013784 ,
GSM5013785 ,
GSM5013786 ,
GSM5013787 ,
GSM5013788 ,
GSM5013789 ,
GSM5013790 ,
GSM5013791 ,
GSM5013792 ,
GSM5013793 ,
GSM5013794 ,
GSM5013795 ,
GSM5013796 ,
GSM5013797 ,
GSM5013798 ,
GSM5013799 ,
GSM5013800 ,
GSM5013801 ,
GSM5013802 ,
GSM5013803 ,
GSM5013804 ,
GSM5013805 ,
GSM5013806 ,
GSM5013807 ,
GSM5013808 ,
GSM5013809 ,
GSM5013810 ,
GSM5013811 ,
GSM5013812 Series (2)
GSE154031 Single Cell Genomechanics: Correlating Cancer Cell Mechanics and Gene Expression
GSE164549 Comparison of microRNA Expression Profile in Patients with Chronic Myeloid Leukemia Treated by Allogeneic Hematopoietic Stem Cell Transplantation and Chronic Myeloid Leukemia patients treated with imatinib mesylate.
Data table header descriptions ID GB_ACC Gene Symbol Gene Symbol
Gene Name Gene Name
Function Function of Gene and Translated Protein
Data table ID GB_ACC Gene Symbol Gene Name Function ACTA2
NM_001613.3
ACTA2
"actin, alpha 2, smooth muscle"
Cytoskeleton
ACTB
NM_001101.4
ACTB
"actin, beta"
Cytoskeleton
AKT1
NM_001014432.1
AKT1
RAC alpha serine/threonine protein kinase
Cell Signaling
ALDH1A2
NM_001206897.1
ALDH1A2
aldehyde dehydrogenase isoform 1
CSC marker
APC
NM_001354899.1
APC
Adenomatous polyposis coli
Regulation of Cell Cycle
B2M
NM_004048.2
B2M
Beta 2 microglobulin
Housekeeping/reference
CALD1
NM_033138.3
CALD1
Caldesmon
Cytoskeleton
CAV1
NM_001172895
CAV1
caveolin 1
EMT
CD24
NM_001291738.1
CD24
heat stable antigen
Cell surface marker
CD44_2
NM_001202557.1
CD44
hyaluronic acid receptor
Cell surface marker
CD82
NM_002231.3
CD82
CD82 molecule
Metastasis
CDH1
NM_004360.4
CDH1
"cadherin 1, type 1, E-cadherin (epithelial)"
Epithelial
CDH2_2
NM_001792.4
CDH2
N Cadherin
Cell Adhesion Molecules
CDH3
NM_001793.5
CDH3
"cadherin 3, type 1, P-cadherin (placental) "
EMT
CDH6
NM_004932.3
CDH6
K cadherin
Cell Adhesion Molecules
CFL1
NM_005507.2
CFL1
cofilin 1 (non-muscle)
Cytoskeleton
COL11A1
NM_001854.3
COL11A1
Collagen type XI alpha 1
ECM Molecule
COL1A2
NM_000089
COL1A2
"collagen, type I, alpha 2"
ECM Molecule
COL5A1
NM_000093.4
COL5A1
Collagen type V alpha 1
ECM Molecule
COL6A2
NM_001849.3
COL6A2
Collagen type VI alpha 2
ECM Molecule
90 6 Kbytes .Supplementary data files not provided
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