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Platform GPL29063 Query DataSets for GPL29063
Status Public on Feb 03, 2021
Title GeoChip 5.0
Technology type spotted oligonucleotide
Distribution custom-commercial
Organisms Bacteria; Archaea; Eukaryota; Viruses
Manufacturer Glomics Inc.
Manufacture protocol see manufacturer's web site(http://www.glomics.com/gch-tech.html)
 
 
Submission date Aug 24, 2020
Last update date Feb 03, 2021
Contact name Huabing Li
E-mail(s) hbli@niglas.ac.cn
Organization name Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences
Street address East Beijing Road 73
City Nanjing
ZIP/Postal code 210008
Country China
 
Samples (24) GSM4743828, GSM4743829, GSM4743830, GSM4743831, GSM4743832, GSM4743833 
Series (1)
GSE156784 Enhanced metabolic potentials and functional gene interactions of microbial stress response towards high elevation in freshwater lakes

Data table header descriptions
ID
SPOT_ID GenPept_ID
Gene Gene name
Organism The organism the gene derives from
Gene_category High level gene category
Subcategory1 Mid level gene category
Subcategory2 Low level gene category
Lineage The phylogenetic information of organism

Data table
ID SPOT_ID Gene Organism Gene_category Subcategory1 Subcategory2 Lineage
2539 2539 mnp Coprinopsis cinerea Carbon cycling Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Agaricales;family:Psathyrellaceae;genus:Coprinopsis;
2776 2776 cat_fun Pichia angusta soil_benifit superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;genus:Ogataea;
2788 2788 glucoamylase Amorphotheca resinae Carbon cycling Carbon degradation Starch superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Leotiomycetes;family:Myxotrichaceae;genus:Amorphotheca;
2912 2912 exoinulinase_fungi Kluyveromyces marxianus Fungi function carbon degradation superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Saccharomycetes;order:Saccharomycetales;family:Saccharomycetaceae;genus:Kluyveromyces;
2975 2975 AceB Neurospora crassa Carbon cycling Carbon degradation Others superkingdom:Eukaryota;kingdom:Fungi;phylum:Ascomycota;class:Sordariomycetes;order:Sordariales;family:Sordariaceae;genus:Neurospora;
3138 3138 per_fun Phanerochaete chrysosporium soil_benifit superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete;
3153 3153 per_fun Phanerochaete chrysosporium soil_benifit Carbon degradation Lignin superkingdom:Eukaryota;kingdom:Fungi;phylum:Basidiomycota;class:Agaricomycetes;order:Corticiales;family:Corticiaceae;genus:Phanerochaete;
15075 15075 RNA_dependent__RNA_polymerase Enterobacteria phage fr Bacteria phage REPLICATION superkingdom:Viruses;family:Leviviridae;genus:Levivirus;species:Enterobacteria phage MS2;
15116 15116 Host_recognition_T2_type Bacteriophage M1 Bacteria phage HOST RECOGNITION/STRUCTURAL superkingdom:Viruses;order:Caudovirales;family:Myoviridae;genus:T4-like viruses;
15687 15687 DNA_ligase Enterobacteria phage T3 Bacteria phage REPLICATION superkingdom:Viruses;order:Caudovirales;family:Podoviridae;genus:T7-like viruses;
38638 38638 nifH Nostoc sp. PCC 7120 Nitrogen Nitrogen fixation superkingdom:Bacteria;phylum:Cyanobacteria;order:Nostocales;family:Nostocaceae;genus:Nostoc;
38782 38782 nosZ Ralstonia eutropha H16 Nitrogen Denitrification superkingdom:Bacteria;phylum:Proteobacteria;class:Betaproteobacteria;order:Burkholderiales;family:Burkholderiaceae;genus:Cupriavidus;species:Cupriavidus necator;
39301 39301 nplT Alicyclobacillus acidocaldarius Carbon cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Alicyclobacillaceae;genus:Alicyclobacillus;
39420 39420 amyA_Firmicutes Bacillus circulans Carbon cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;
39564 39564 amyA_Firmicutes Bacillus licheniformis Carbon cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;
39566 39566 amyA Bacillus licheniformis Carbon cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;
39839 39839 cda Bacillus sp. Carbon cycling Carbon degradation Starch superkingdom:Bacteria;phylum:Firmicutes;class:Bacilli;order:Bacillales;family:Bacillaceae;genus:Bacillus;
43952 43952 xylA Klebsiella pneumoniae Carbon cycling Carbon degradation Hemicellulose superkingdom:Bacteria;phylum:Proteobacteria;class:Gammaproteobacteria;order:Enterobacteriales;family:Enterobacteriaceae;genus:Klebsiella;
44366 44366 nifH Methanobacterium ivanovii Nitrogen Nitrogen fixation superkingdom:Archaea;phylum:Euryarchaeota;class:Methanobacteria;order:Methanobacteriales;family:Methanobacteriaceae;genus:Methanobacterium;
45543 45543 rubisco Prochlorothrix hollandica Carbon cycling Carbon fixation superkingdom:Bacteria;phylum:Cyanobacteria;order:Prochlorales;family:Prochlorotrichaceae;genus:Prochlorothrix;

Total number of rows: 21035

Table truncated, full table size 4701 Kbytes.




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