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Platform GPL29289 Query DataSets for GPL29289
Status Public on Jan 01, 2021
Title Agilent-064078 M.tuberculosis_8x15K_V2
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mycobacterium tuberculosis
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description experimentally validated by OakLabs' MyArray strategy

Arrays of this design have barcodes that begin with 16064078 or 2564078.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Oct 23, 2020
Last update date Jan 01, 2021
Contact name Christian Utpatel
Organization name Forschungszentrum Borstel
Street address Parkallee 1
City Borstel
ZIP/Postal code 23845
Country Germany
 
Samples (9) GSM4852024, GSM4852025, GSM4852026, GSM4852027, GSM4852028, GSM4852029 
Series (2)
GSE159982 Survival of hypoxia-induced dormancy is not a common feature of all strains of the Mycobacterium tuberculosis complex I
GSE159983 Survival of hypoxia-induced dormancy is not a common feature of all strains of the Mycobacterium tuberculosis complex II

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 TubMLT245432 TubMLT245432 FALSE Rv2716 unmapped NC_000962 hypothetical protein NP_217232.1 [3029171:3029858] 1 TGCGCGAGAGGGGGACGCCAATTAACACGCTGCAGGTGCCGGCCG
5 96 156 TubMLT369771 TubMLT369771 FALSE Rv1289 unmapped NC_000962 hypothetical protein NP_215805.1 [1442766:1443399] 1 GGTTGCACGGTCATGCTGACGAATCCTCGGTTGAATTCGAAGTAAGCCCGTA
6 96 154 TubMLT425559 TubMLT425559 FALSE Rv3237c unmapped NC_000962 hypothetical protein NP_217754.1 [3613120:3613603] -1 GTGGCGGTTTCGACGTCGTCCTGTATGGCCGCGATGATCCGGACG
7 96 152 TubMLT243659 TubMLT243659 FALSE fadE22a Mb3088c unmapped NC_002945 acyl-CoA dehydrogenase NP_856733.1 [3381629:3381974] -1 CGACACGGTGGCTCTGGCTATGGCCTGTCCGAGCTTGTGGTGGTG
8 96 150 TubMLT307022 TubMLT307022 FALSE Rv0330c unmapped NC_000962 Hypothetical protein NP_214844.1 [395346:396087] -1 CTCGCCGAGTTTGTCGTTCGGGCCACCACAGCTTCTTCGGACTAA
9 96 148 TubREJ00272 TubREJ00272 FALSE PE10 MAF_11030 unmapped NC_015758 PE family protein YP_004722796.1 [1212319:1212625] 1 CATCATGACCACGGCAAGCGCGACCGCGTCTTCCACGGGC
10 96 146 TubMLT334251 TubMLT334251 FALSE Rv1112 unmapped NC_000962 Probable GTP binding protein NP_215628.1 [1238254:1239328] 1 AGGCGGCCGGGGTGATCCACAGCGACTTCGAGAAGGGTTTCATCAA
11 96 144 TubREJ00708 TubREJ00708 FALSE M943_07530 unmapped NC_021740 hypothetical protein YP_008225545.1 [1613971:1614103] 1 GGTCGGCTTCGACAACCTCGAGTACCGTCTGGAACAGATC
12 96 142 TubMLT300834 TubMLT300834 FALSE Rv2798c unmapped NC_000962 hypothetical protein NP_217314.1 [3107310:3107637] -1 GTCGAGGGCGCTGCTGACCAGGATCGGTGATCACGCATTCGGGCT
13 96 140 TubMLT301534 TubMLT301534 FALSE treYb Mb1589c unmapped NC_002945 malto-oligosyltrehalose synthase NP_855241.1 [1753306:1754041] -1 GCTGGCCGCTAAGCTGCTCGCGTTGACCGTGCCTGGCGTACCCGA
14 96 138 TubMLT260114 TubMLT260114 FALSE hycD Rv0084 unmapped NC_000962 Possible formate hydrogenlyase HycD (FHL) NP_214598.1 [92327:93278] 1 GGACAACCCGGCCACCCACCTGGAATTGACGATGGTGCACGAGGC
15 96 136 TubMLT418554 TubMLT418554 FALSE rplJ Rv0651 unmapped NC_000962 50S ribosomal protein L10 RplJ NP_215165.1 [748275:748812] 1 CGCAGTTCAAGGAGTCGACCGCGACGTTGATCACCGAATACCGCG
16 96 134 TubMLT285452 TubMLT285452 FALSE PPE8 Rv0355c unmapped NC_000962 PPE family protein PPE8 YP_177721.2 [424776:434679] -1 CAATCACTGTTCCCCAGATCCCGCTACTGAACTTTAGCCTCAACATTCCGGT
17 96 132 TubMLT256128 TubMLT256128 FALSE lpqH Rv3763 unmapped NC_000962 19 kDa lipoprotein antigen precursor LpqH NP_218280.1 [4209046:4209526] 1 ACCGGACAGGGTAACGCCTCGGCAACCAAGGACGGCAGCCACTACAA
18 96 130 TubMLT339860 TubMLT339860 FALSE Mb0353 unmapped NC_002945 hypothetical protein NP_854016.1 [416216:416489] 1 CTACGCCGTCCTGCATGTGATCGACACGCCCGATGTCAATGCCAA
19 96 128 TubMLT432331 TubMLT432331 FALSE MT49_4138 unmapped Mtub49-02_11111 HYPOTHETICAL PROTEIN [4231529:4232111] 1 ATTGGCAAAGGGTCGCCAGGTTGGTCACATCGTGCTCGCCGCCGC
20 96 126 TubXHB285173 TubXHB285173 FALSE PPE56a Mb3385c unmapped NC_002945 hypothetical protein NP_857026.1 [3719323:3720628] -1 TATCGGGTTGTTCAACTCCGGCACCGGGAATGTGGGGTTCTTCAA

Total number of rows: 15744

Table truncated, full table size 3039 Kbytes.




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Supplementary file Size Download File type/resource
GPL29289_064078_D_GEO_20140130.txt.gz 912.1 Kb (ftp)(http) TXT

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