NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL2931 Query DataSets for GPL2931
Status Public on Oct 14, 2005
Title FHCRC Mouse 22K v1.0
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Mus musculus
Manufacturer FHCRC Genomics Resource
Manufacture protocol The FHCRC Mouse 22K array was manufactured by combining the
15,341 PCR amplified clones from the NIA 15K Mouse cDNA Clone Set and 7409 PCR amplified clones from the NIA 7.4K Mouse cDNA Clone Set along with 240 'control' spots and printing them on glass microscope slides with a Genomic Solutions Omnigrid arrayer.
 
 
Submission date Oct 11, 2005
Last update date Aug 28, 2006
Contact name Ryan Basom
Organization name Fred Hutchinson Cancer Research Center
Lab Genomics and Bioinformatics Shared Resources
Street address 1100 Fairview Ave N
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 

Data table header descriptions
ID
Parental Clone Source clone name
Clone Verification Either the 3’ sequence or the 5’ sequence show sufficient homology to verify the address of the clone is correct
Full Seq Value=’Y’ indicates full sequence for the clone is available. 3’ sequence and 5’ sequence assembled using Phred/Phrap system
Sequence name (3'-end) 3' sequence of the Daughter Clone
3'-sequence verified? The 3’ sequence of the Daughter clone shows sufficient homology to the 3’ parent clone to verify the sequence
Length Length of 3' sequence of the Daughter Clone
Genbank accession number of 3'-end sequence GenBank Accession number of the 3' end Sequence of the Daughter Clone
3' Putative Gene ID based on NIA Mouse Gene Index version 4 The 3' Sequence Description is taken based on NIA Mouse Gene Index version 4 clustering
3' Gene Symbol(s) based on NIA Mouse Gene Index version 4 'U' cluster Gene symbol(s) of NIA Mouse Gene Index version 4 cluster in which 3' sequence present
NIA Mouse Gene Index version 4 cluster NIA Mouse Gene Index version 4 cluster in which 3' sequence present
Chromosome based on NIA Mouse Gene Index version 4 'U' cluster NIA Mouse Gene Index version 4 cluster chromosome in which 3' sequence present
Strand information based on NIA Mouse Gene Index version 4 'U' cluster NIA Mouse Gene Index version 4 cluster chromosome strand in which 3' sequence present
3' sequence 'U' cluster chromosome start position based NIA Mouse Gene Index version 4 NIA Mouse Gene Index version 4 cluster chromosome start position in which 3' sequence present
3' sequence 'U' cluster chromosome end position based NIA Mouse Gene Index version 4 NIA Mouse Gene Index version 4 cluster chromosome end position in which 3' sequence present
Sequence name (5'-end) 5' sequence of the Daughter Clone
5'-sequence verified? The 5’ sequence of the Daughter clone shows sufficient homology to the 5’ parent clone to verify the sequence
Length
Genbank accession number of 5'-end sequence GenBank Accession number of the 5' end Sequence of the Daughter Clone
5' Putative Gene ID based on NIA Mouse Gene Index version 4 The 5' Sequence Description is taken based on NIA Mouse Gene Index version 4 clustering
5' Gene Symbol(s) based on NIA Mouse Gene Index version 4 'U' cluster Gene symbol(s) of NIA Mouse Gene Index version 4 cluster in which 5' sequence present
NIA Mouse Gene Index version 4 cluster
Chromosome based on NIA Mouse Gene Index version 4 'U' cluster
Strand information based on NIA Mouse Gene Index version 4 'U' cluster
5' sequence 'U' cluster chromosome start position based NIA Mouse Gene Index version 4 NIA Mouse Gene Index version 4 cluster chromosome start position in which 5' sequence present
5' sequence 'U' cluster chromosome end position based NIA Mouse Gene Index version 4 NIA Mouse Gene Index version 4 cluster chromosome end position in which 5' sequence present
GB_LIST GenBank accession numbers
SPOT_ID
Comments Control spot designation

Data table
ID Parental Clone Clone Verification Full Seq Sequence name (3'-end) 3'-sequence verified? Length Genbank accession number of 3'-end sequence 3' Putative Gene ID based on NIA Mouse Gene Index version 4 3' Gene Symbol(s) based on NIA Mouse Gene Index version 4 'U' cluster NIA Mouse Gene Index version 4 cluster Chromosome based on NIA Mouse Gene Index version 4 'U' cluster Strand information based on NIA Mouse Gene Index version 4 'U' cluster 3' sequence 'U' cluster chromosome start position based NIA Mouse Gene Index version 4 3' sequence 'U' cluster chromosome end position based NIA Mouse Gene Index version 4 Sequence name (5'-end) 5'-sequence verified? Length Genbank accession number of 5'-end sequence 5' Putative Gene ID based on NIA Mouse Gene Index version 4 5' Gene Symbol(s) based on NIA Mouse Gene Index version 4 'U' cluster NIA Mouse Gene Index version 4 cluster Chromosome based on NIA Mouse Gene Index version 4 'U' cluster Strand information based on NIA Mouse Gene Index version 4 'U' cluster 5' sequence 'U' cluster chromosome start position based NIA Mouse Gene Index version 4 5' sequence 'U' cluster chromosome end position based NIA Mouse Gene Index version 4 GB_LIST SPOT_ID Comments
H3001A01 C0001A09 Y H3001A01-3 U 0 H3001A01-5 Y 589 CK334091 U095210 chr18 + 76824192 76824781 CK334091
H3001A02 C0001B02 Y Y H3001A02-3 Y 330 BG062929 secretin Sct U029453 chr7 - 128969166 128969977 H3001A02-5 Y 373 BG076506 secretin Sct U029453 chr7 - 128969166 128969977 BG062929, BG076506
H3001A03 C0001C01 Y H3001A03-3 Y 437 BG062930 DNA segment, Chr 11, Wayne State University 99, expressed D11wsu99e U047817 chr11 - 46090312 46091120 H3001A03-5 0 BG062930
H3001A04 C0001C05 Y Y H3001A04-3 Y 603 BG062931 complement component 1, q subcomponent binding protein C1qbp U033012 chr11 - 70590362 70595582 H3001A04-5 316 BG076507 complement component 1, q subcomponent binding protein C1qbp U033012 chr11 - 70590362 70595582 BG062931, BG076507
H3001A05 C0001C07 Y H3001A05-3 Y 234 BG062932 RIKEN cDNA 9930021J03 gene 9930021J03Rik U019356 chr19 - 29051873 29107515 H3001A05-5 228 BG062932
H3001A06 C0001D10 U H3001A06-3 U 0 H3001A06-5 0 unknown
H3001A07 C0001D11 Y H3001A07-3 Y 465 BG062933 NADH dehydrogenase (ubiquinone) Fe-S protein 5 Ndufs5 U017140 chr16 + 42831249 42831765 H3001A07-5 0 BG062933
H3001A08 C0001E03 Y H3001A08-3 Y 627 BG062934 myosin IB Myo1b U021308 chr1 - 52122420 52290154 H3001A08-5 325 BG076509 myosin IB Myo1b U021308 chr1 - 52122420 52290154 BG062934, BG076509
H3001A09 C0001E04 U H3001A09-3 U 0 H3001A09-5 0 unknown
H3001A10 C0001E05 Y H3001A10-3 Y 522 BG062935 U030404 chr8 + 124915812 124916335 H3001A10-5 0 BG062935
H3001A11 C0001H10 Y Y H3001A11-3 Y 582 BG062936 gephyrin Gphn U014129 chr12 + 73524163 73982211 H3001A11-5 0 BG062936
H3001A12 C0002A05 Y Y H3001A12-3 Y 518 BG062937 bromodomain containing 4 Brd4 U037661 chr17 - 30797820 30887366 H3001A12-5 Y 289 BG076510 bromodomain containing 4 Brd4 U037661 chr17 - 30797820 30887366 BG062937, BG076510
H3001B01 C0002C05 Y H3001B01-3 Y 507 BG063015 RIKEN cDNA 9430023L20 gene 9430023L20Rik U016687 chr15 + 101751601 101758276 H3001B01-5 125 BG076511 RIKEN cDNA 9430023L20 gene 9430023L20Rik U016687 chr15 + 101751601 101758276 BG063015, BG076511
H3001B02 C0002C06 Y H3001B02-3 Y 713 BG063016 ROD1 regulator of differentiation 1 (S. pombe) Rod1 U025125 chr4 - 58739975 58818059 H3001B02-5 242 BG076512 ROD1 regulator of differentiation 1 (S. pombe) Rod1 U025125 chr4 - 58739975 58818059 BG063016, BG076512
H3001B03 C0002D03 Y Y H3001B03-3 Y 561 BG063017 EST AA407452 AA407452 U027100 chr6 - 28092858 28250326 H3001B03-5 74 BG063017
H3001B04 C0002D05 Y Y H3001B04-3 Y 658 BG063018 DNA segment, Chr 9, Wayne State University 20, expressed D9wsu20e U031129 chr9 - 80171133 80196313 H3001B04-5 122 BG076514 DNA segment, Chr 9, Wayne State University 20, expressed D9wsu20e U031129 chr9 - 80171133 80196313 BG063018, BG076514
H3001B05 C0002D08 Y H3001B05-3 Y 655 BG063019 pan hematopoietic expression Phemx U008988 chr7 + 130709817 130724416 H3001B05-5 122 BG076515 pan hematopoietic expression Phemx U008988 chr7 + 130709817 130724416 BG063019, BG076515
H3001B06 C0002F06 Y Y H3001B06-3 Y 729 BG063020 Mus musculus RIKEN cDNA 9330177P20 gene (9330177P20Rik), mRNA 9330177P20Rik U004837 chr4 + 125447698 125499960 H3001B06-5 463 BG076516 BG063020, BG076516
H3001B07 C0002F10 Y H3001B07-3 Y 690 BG063021 tripartite motif-containing 36 Trim36 U038399 chr18 - 46609734 46656877 H3001B07-5 302 BG076517 tripartite motif-containing 36 Trim36 U038399 chr18 - 46609734 46656877 BG063021, BG076517
H3001B08 C0002F11 Y Y H3001B08-3 Y 644 BG063022 Yamaguchi sarcoma viral (v-yes-1) oncogene homolog Lyn U041317 chr4 + 3605248 3718759 H3001B08-5 449 BG076518 Yamaguchi sarcoma viral (v-yes-1) oncogene homolog Lyn U041317 chr4 + 3605248 3718759 BG063022, BG076518

Total number of rows: 23167

Table truncated, full table size 4386 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap