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Status
Public on Dec 01, 2005
Title
Keck Glycine max 18kA cDNA Prints101-108
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Glycine max
Manufacturer
Vodkin laboratory, University of Illinois and W.M. Keck Center, University of Illinois
Manufacture protocol
amplified cDNAs printed with Genemachines Omnigrid
Support
glass
Description
see Vodkin et al., BMC Genomics 5:73 (2004) for details of cDNAs represented and Thibaud-Nissan, et al., Plant Physiol 132: 118-136 (2003); and Zabala and Vodkin, Plant Cell 17: 2619-2632 (2005) for use of cDNA arrays in soybean
Web link
http://soybeangenomics.cropsci.uiuc.edu/
Contributor(s)
Vodkin LO , Gonzalez DO , Tuteja J , Zabala G , Clough S , Khanna A , Stromvik M , Jones S , Bari A , Band M , Gong G , Liu L
Citation(s)
15453914
Submission date
Oct 26, 2005
Last update date
Dec 01, 2005
Contact name
Lila O. Vodkin
E-mail(s)
l-vodkin@illinois.edu
Phone
217-244-6147
Organization name
University of Illinois
Department
Crop Sciences
Lab
Lila Vodkin
Street address
1201 W. Gregory Dr.
City
Urbana
State/province
IL
ZIP/Postal code
61801
Country
USA
Samples (191)
GSM87407 , GSM87408 , GSM87409 , GSM87410 , GSM87411 , GSM87412
GSM94935 ,
GSM94936 ,
GSM94937 ,
GSM94938 ,
GSM94939 ,
GSM94940 ,
GSM94941 ,
GSM94942 ,
GSM94943 ,
GSM94944 ,
GSM94945 ,
GSM94946 ,
GSM94947 ,
GSM94948 ,
GSM94949 ,
GSM94950 ,
GSM94951 ,
GSM94952 ,
GSM94953 ,
GSM94954 ,
GSM94955 ,
GSM94956 ,
GSM94957 ,
GSM94958 ,
GSM94959 ,
GSM94960 ,
GSM94961 ,
GSM94962 ,
GSM94963 ,
GSM94964 ,
GSM94965 ,
GSM94966 ,
GSM94967 ,
GSM94968 ,
GSM94969 ,
GSM94970 ,
GSM94971 ,
GSM94972 ,
GSM94973 ,
GSM94974 ,
GSM94975 ,
GSM94976 ,
GSM97598 ,
GSM97599 ,
GSM97600 ,
GSM97601 ,
GSM97602 ,
GSM97603 ,
GSM97604 ,
GSM97605 ,
GSM97606 ,
GSM97607 ,
GSM97608 ,
GSM97609 ,
GSM97610 ,
GSM97611 ,
GSM97612 ,
GSM97613 ,
GSM97614 ,
GSM97615 ,
GSM97616 ,
GSM97617 ,
GSM97618 ,
GSM97619 ,
GSM97620 ,
GSM97621 ,
GSM97622 ,
GSM97623 ,
GSM108299 ,
GSM108300 ,
GSM108301 ,
GSM108302 ,
GSM108303 ,
GSM108304 ,
GSM108305 ,
GSM108306 ,
GSM108307 ,
GSM108308 ,
GSM108309 ,
GSM176655 ,
GSM176658 ,
GSM176659 ,
GSM176660 ,
GSM176661 ,
GSM176681 ,
GSM261394 ,
GSM261395 ,
GSM261396 ,
GSM261397 ,
GSM261398 ,
GSM261399 ,
GSM261400 ,
GSM261401 ,
GSM261402 ,
GSM261403 ,
GSM261404 ,
GSM261405 ,
GSM261406 ,
GSM261407 ,
GSM261408 ,
GSM261409 ,
GSM261410 ,
GSM261411 ,
GSM261412 ,
GSM261413 ,
GSM261414 ,
GSM261415 ,
GSM261416 ,
GSM261417 ,
GSM261418 ,
GSM261419 ,
GSM261420 ,
GSM261421 ,
GSM385237 ,
GSM385238 ,
GSM385239 ,
GSM385240 ,
GSM385241 ,
GSM385242 ,
GSM385243 ,
GSM385244 ,
GSM385245 ,
GSM385246 ,
GSM385247 ,
GSM385248 ,
GSM385249 ,
GSM385250 ,
GSM385251 ,
GSM385252 ,
GSM385253 ,
GSM385254 ,
GSM385749 ,
GSM385750 ,
GSM385751 ,
GSM385752 ,
GSM385753 ,
GSM385754 ,
GSM385755 ,
GSM385756 ,
GSM385757 ,
GSM385758 ,
GSM385759 ,
GSM385760 ,
GSM385761 ,
GSM385762 ,
GSM385763 ,
GSM385764 ,
GSM385765 ,
GSM385766 ,
GSM385767 ,
GSM385768 ,
GSM385769 ,
GSM385770 ,
GSM385771 ,
GSM385772 ,
GSM385773 ,
GSM385774 ,
GSM385775 ,
GSM385776 ,
GSM385777 ,
GSM385778 ,
GSM385779 ,
GSM385780 ,
GSM385781 ,
GSM385782 ,
GSM385783 ,
GSM385784 ,
GSM482753 ,
GSM482754 ,
GSM482755 ,
GSM482756 ,
GSM482757 ,
GSM482758 ,
GSM482759 ,
GSM482760 ,
GSM482761 ,
GSM482762 ,
GSM482763 ,
GSM482764 ,
GSM482765 ,
GSM482766 ,
GSM482767 ,
GSM482768 ,
GSM482769 ,
GSM482770
Series (12)
GSE3810
Soybean cultivars,Soybean Hydrophobic Protein(HPS) comparison
GSE4194
Soybean cultivars RCAT-Angora & Harovinton, embryo comparison and development
GSE4276
Soybean cultivars OX951 & OX736, seed coat permeablity comparison
GSE4842
Soybean, resistant & susceptible response to P.sojae
GSE7325
cDNA Microarray Analysis of Soybean NILs under Fe Sufficient Hydroponic Conditions
GSE10340
Transcription profiling of soybean nodulation by Bradyrhizobium japonicum
GSE15337
Gene expression profiling soybean stem tissue early response to Sclerotinia sclerotiorum 1
GSE15338
Gene expression profiling soybean stem tissue early response to Sclerotinia sclerotiorum 3
GSE15369
Gene expression profiling soybean stem tissue early response to Sclerotinia sclerotiorum
GSE15374
Effects of Photosystem II Interfering Herbicides Atrazine and Bentazon on the Soybean Transcriptome 1
GSE15377
Effects of Photosystem II Interfering Herbicides Atrazine and Bentazon on the Soybean Transcriptome
GSE19410
Drought response in Piriqueta caroliniana hybrid and parental morphotypes
Data table header descriptions
ID
Meta Row
the metagrid row number of 12 total within the 19200 spot array
Meta Col
the metagrid column number of 4 total within the 19200 spot array
Grid Row
the grid row of 20 total within the 19200 spot array
Grid Col
the grid row of 20 total within the 19200 spot array
CLONE_ID 5'
name of the individual cDNA clone in the 384-well source plate that was sequenced at the 5' end
GEN_ACC 5'
Genbank accession number for the 5' EST from the 5' source clone
CLONE_ID 3'
name of the individual cDNA clone in the 384-well destination plate after reracking of selected cDNAs from the original source libraries based on 5' EST data
GEN_ACC 3'
Genbank accession number for the 3' EST derived from the 3' reracked cDNA clone ID
GEN_ACC 5'
GEN_ACC 3'
GB_LIST
GenBank accessions
SPOT_ID
Array type and print no
indicates the specific platform and print numbers
Spot Location
metarow metacolumn grid row grid column of the 19200 postions on the array
Genepix spot
spot location in block, row, and column format similar to Genpix standard for the 19200 postions on the array
Data table
ID
Meta Row
Meta Col
Grid Row
Grid Col
CLONE_ID 5'
GEN_ACC 5'
CLONE_ID 3'
GEN_ACC 3'
GEN_ACC 5'
GEN_ACC 3'
GB_LIST
SPOT_ID
Array type and print no
Spot Location
Genepix spot
Gm00024cDNA18kA
1
1
1
1
Gm-c1004-417
AI442385
Gm-r1021-24
No 3' accession
AI442385
AI442385
Keck18kA_Prints101-108
01_01_01_01
01_01_01
Gm00120cDNA18kA
1
1
1
2
Gm-c1004-732
AI443760
Gm-r1021-120
AW348149
AI443760
AW348149
AI443760 , AW348149
Keck18kA_Prints101-108
01_01_01_02
01_01_02
Gm00216cDNA18kA
1
1
1
3
Gm-c1004-400
AI442377
Gm-r1021-216
AW348170
AI442377
AW348170
AI442377 , AW348170
Keck18kA_Prints101-108
01_01_01_03
01_01_03
Gm00312cDNA18kA
1
1
1
4
Gm-c1004-547
AI442479
Gm-r1021-312
AW348188
AI442479
AW348188
AI442479 , AW348188
Keck18kA_Prints101-108
01_01_01_04
01_01_04
Gm00012cDNA18kA
1
1
1
5
Gm-c1004-464
AI442436
Gm-r1021-12
AW348131
AI442436
AW348131
AI442436 , AW348131
Keck18kA_Prints101-108
01_01_01_05
01_01_05
Gm00108cDNA18kA
1
1
1
6
Gm-c1004-707
AI444015
Gm-r1021-108
AW348153
AI444015
AW348153
AI444015 , AW348153
Keck18kA_Prints101-108
01_01_01_06
01_01_06
Gm00204cDNA18kA
1
1
1
7
Gm-c1004-615
AI443937
Gm-r1021-204
No 3' accession
AI443937
AI443937
Keck18kA_Prints101-108
01_01_01_07
01_01_07
Gm00300cDNA18kA
1
1
1
8
Gm-c1004-618
AI443945
Gm-r1021-300
No 3' accession
AI443945
AI443945
Keck18kA_Prints101-108
01_01_01_08
01_01_08
Gm00408cDNA18kA
1
1
1
9
Gm-c1004-1401
AI437553
Gm-r1021-408
AW348421
AI437553
AW348421
AI437553 , AW348421
Keck18kA_Prints101-108
01_01_01_09
01_01_09
Gm00504cDNA18kA
1
1
1
10
Gm-c1004-1380
AI437544
Gm-r1021-504
AW348438
AI437544
AW348438
AI437544 , AW348438
Keck18kA_Prints101-108
01_01_01_10
01_01_10
Gm00600cDNA18kA
1
1
1
11
Gm-c1004-1215
AI437990
Gm-r1021-600
AW348454
AI437990
AW348454
AI437990 , AW348454
Keck18kA_Prints101-108
01_01_01_11
01_01_11
Gm00696cDNA18kA
1
1
1
12
Gm-c1004-1433
AI437578
Gm-r1021-696
AW348470
AI437578
AW348470
AI437578 , AW348470
Keck18kA_Prints101-108
01_01_01_12
01_01_12
Gm00396cDNA18kA
1
1
1
13
Gm-c1004-1352
AI437521
Gm-r1021-396
AW348426
AI437521
AW348426
AI437521 , AW348426
Keck18kA_Prints101-108
01_01_01_13
01_01_13
Gm00492cDNA18kA
1
1
1
14
Gm-c1004-1475
AI437610
Gm-r1021-492
No 3' accession
AI437610
AI437610
Keck18kA_Prints101-108
01_01_01_14
01_01_14
Gm00588cDNA18kA
1
1
1
15
Gm-c1004-1382
AI437545
Gm-r1021-588
AW348458
AI437545
AW348458
AI437545 , AW348458
Keck18kA_Prints101-108
01_01_01_15
01_01_15
Gm00684cDNA18kA
1
1
1
16
Gm-c1004-1193
AI437971
Gm-r1021-684
AW348475
AI437971
AW348475
AI437971 , AW348475
Keck18kA_Prints101-108
01_01_01_16
01_01_16
Gm00792cDNA18kA
1
1
1
17
Gm-c1004-2192
AI443902
Gm-r1021-792
No 3' accession
AI443902
AI443902
Keck18kA_Prints101-108
01_01_01_17
01_01_17
Gm00888cDNA18kA
1
1
1
18
Gm-c1004-2195
AI443892
Gm-r1021-888
AW348739
AI443892
AW348739
AI443892 , AW348739
Keck18kA_Prints101-108
01_01_01_18
01_01_18
Gm00984cDNA18kA
1
1
1
19
Gm-c1004-2054
AI442632
Gm-r1021-984
AW348758
AI442632
AW348758
AI442632 , AW348758
Keck18kA_Prints101-108
01_01_01_19
01_01_19
Gm01080cDNA18kA
1
1
1
20
Gm-c1004-1985
AI443635
Gm-r1021-1080
AW348774
AI443635
AW348774
AI443635 , AW348774
Keck18kA_Prints101-108
01_01_01_20
01_01_20
Total number of rows: 19200 Table truncated, full table size 2811 Kbytes .
Supplementary data files not provided