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Platform GPL3015 Query DataSets for GPL3015
Status Public on Dec 01, 2005
Title Keck Glycine max 18kA cDNA Prints101-108
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Glycine max
Manufacturer Vodkin laboratory, University of Illinois and W.M. Keck Center, University of Illinois
Manufacture protocol amplified cDNAs printed with Genemachines Omnigrid

Support glass
 
Description see Vodkin et al., BMC Genomics 5:73 (2004) for details of cDNAs represented and Thibaud-Nissan, et al., Plant Physiol 132: 118-136 (2003); and Zabala and Vodkin, Plant Cell 17: 2619-2632 (2005) for use of cDNA arrays in soybean
 
Web link http://soybeangenomics.cropsci.uiuc.edu/
Contributor(s) Vodkin LO, Gonzalez DO, Tuteja J, Zabala G, Clough S, Khanna A, Stromvik M, Jones S, Bari A, Band M, Gong G, Liu L
Citation(s) 15453914
Submission date Oct 26, 2005
Last update date Dec 01, 2005
Contact name Lila O. Vodkin
E-mail(s) l-vodkin@illinois.edu
Phone 217-244-6147
Organization name University of Illinois
Department Crop Sciences
Lab Lila Vodkin
Street address 1201 W. Gregory Dr.
City Urbana
State/province IL
ZIP/Postal code 61801
Country USA
 
Samples (191) GSM87407, GSM87408, GSM87409, GSM87410, GSM87411, GSM87412 
Series (12)
GSE3810 Soybean cultivars,Soybean Hydrophobic Protein(HPS) comparison
GSE4194 Soybean cultivars RCAT-Angora & Harovinton, embryo comparison and development
GSE4276 Soybean cultivars OX951 & OX736, seed coat permeablity comparison

Data table header descriptions
ID
Meta Row the metagrid row number of 12 total within the 19200 spot array
Meta Col the metagrid column number of 4 total within the 19200 spot array
Grid Row the grid row of 20 total within the 19200 spot array
Grid Col the grid row of 20 total within the 19200 spot array
CLONE_ID 5' name of the individual cDNA clone in the 384-well source plate that was sequenced at the 5' end
GEN_ACC 5' Genbank accession number for the 5' EST from the 5' source clone
CLONE_ID 3' name of the individual cDNA clone in the 384-well destination plate after reracking of selected cDNAs from the original source libraries based on 5' EST data
GEN_ACC 3' Genbank accession number for the 3' EST derived from the 3' reracked cDNA clone ID
GEN_ACC 5'
GEN_ACC 3'
GB_LIST GenBank accessions
SPOT_ID
Array type and print no indicates the specific platform and print numbers
Spot Location metarow metacolumn grid row grid column of the 19200 postions on the array
Genepix spot spot location in block, row, and column format similar to Genpix standard for the 19200 postions on the array

Data table
ID Meta Row Meta Col Grid Row Grid Col CLONE_ID 5' GEN_ACC 5' CLONE_ID 3' GEN_ACC 3' GEN_ACC 5' GEN_ACC 3' GB_LIST SPOT_ID Array type and print no Spot Location Genepix spot
Gm00024cDNA18kA 1 1 1 1 Gm-c1004-417 AI442385 Gm-r1021-24 No 3' accession AI442385 AI442385 Keck18kA_Prints101-108 01_01_01_01 01_01_01
Gm00120cDNA18kA 1 1 1 2 Gm-c1004-732 AI443760 Gm-r1021-120 AW348149 AI443760 AW348149 AI443760, AW348149 Keck18kA_Prints101-108 01_01_01_02 01_01_02
Gm00216cDNA18kA 1 1 1 3 Gm-c1004-400 AI442377 Gm-r1021-216 AW348170 AI442377 AW348170 AI442377, AW348170 Keck18kA_Prints101-108 01_01_01_03 01_01_03
Gm00312cDNA18kA 1 1 1 4 Gm-c1004-547 AI442479 Gm-r1021-312 AW348188 AI442479 AW348188 AI442479, AW348188 Keck18kA_Prints101-108 01_01_01_04 01_01_04
Gm00012cDNA18kA 1 1 1 5 Gm-c1004-464 AI442436 Gm-r1021-12 AW348131 AI442436 AW348131 AI442436, AW348131 Keck18kA_Prints101-108 01_01_01_05 01_01_05
Gm00108cDNA18kA 1 1 1 6 Gm-c1004-707 AI444015 Gm-r1021-108 AW348153 AI444015 AW348153 AI444015, AW348153 Keck18kA_Prints101-108 01_01_01_06 01_01_06
Gm00204cDNA18kA 1 1 1 7 Gm-c1004-615 AI443937 Gm-r1021-204 No 3' accession AI443937 AI443937 Keck18kA_Prints101-108 01_01_01_07 01_01_07
Gm00300cDNA18kA 1 1 1 8 Gm-c1004-618 AI443945 Gm-r1021-300 No 3' accession AI443945 AI443945 Keck18kA_Prints101-108 01_01_01_08 01_01_08
Gm00408cDNA18kA 1 1 1 9 Gm-c1004-1401 AI437553 Gm-r1021-408 AW348421 AI437553 AW348421 AI437553, AW348421 Keck18kA_Prints101-108 01_01_01_09 01_01_09
Gm00504cDNA18kA 1 1 1 10 Gm-c1004-1380 AI437544 Gm-r1021-504 AW348438 AI437544 AW348438 AI437544, AW348438 Keck18kA_Prints101-108 01_01_01_10 01_01_10
Gm00600cDNA18kA 1 1 1 11 Gm-c1004-1215 AI437990 Gm-r1021-600 AW348454 AI437990 AW348454 AI437990, AW348454 Keck18kA_Prints101-108 01_01_01_11 01_01_11
Gm00696cDNA18kA 1 1 1 12 Gm-c1004-1433 AI437578 Gm-r1021-696 AW348470 AI437578 AW348470 AI437578, AW348470 Keck18kA_Prints101-108 01_01_01_12 01_01_12
Gm00396cDNA18kA 1 1 1 13 Gm-c1004-1352 AI437521 Gm-r1021-396 AW348426 AI437521 AW348426 AI437521, AW348426 Keck18kA_Prints101-108 01_01_01_13 01_01_13
Gm00492cDNA18kA 1 1 1 14 Gm-c1004-1475 AI437610 Gm-r1021-492 No 3' accession AI437610 AI437610 Keck18kA_Prints101-108 01_01_01_14 01_01_14
Gm00588cDNA18kA 1 1 1 15 Gm-c1004-1382 AI437545 Gm-r1021-588 AW348458 AI437545 AW348458 AI437545, AW348458 Keck18kA_Prints101-108 01_01_01_15 01_01_15
Gm00684cDNA18kA 1 1 1 16 Gm-c1004-1193 AI437971 Gm-r1021-684 AW348475 AI437971 AW348475 AI437971, AW348475 Keck18kA_Prints101-108 01_01_01_16 01_01_16
Gm00792cDNA18kA 1 1 1 17 Gm-c1004-2192 AI443902 Gm-r1021-792 No 3' accession AI443902 AI443902 Keck18kA_Prints101-108 01_01_01_17 01_01_17
Gm00888cDNA18kA 1 1 1 18 Gm-c1004-2195 AI443892 Gm-r1021-888 AW348739 AI443892 AW348739 AI443892, AW348739 Keck18kA_Prints101-108 01_01_01_18 01_01_18
Gm00984cDNA18kA 1 1 1 19 Gm-c1004-2054 AI442632 Gm-r1021-984 AW348758 AI442632 AW348758 AI442632, AW348758 Keck18kA_Prints101-108 01_01_01_19 01_01_19
Gm01080cDNA18kA 1 1 1 20 Gm-c1004-1985 AI443635 Gm-r1021-1080 AW348774 AI443635 AW348774 AI443635, AW348774 Keck18kA_Prints101-108 01_01_01_20 01_01_20

Total number of rows: 19200

Table truncated, full table size 2811 Kbytes.






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