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Platform GPL32759 Query DataSets for GPL32759
Status Public on Nov 15, 2022
Title Microarrays of Escherichia coli encoded tRNAs
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Escherichia coli
Manufacturer Fraunhofer Institute for Biomedical Research (Potsdam, Germany)
Manufacture protocol 1. Oligos were arrayed in 384 well plates with a final concentration of 10 µM in 3× SSC/0.01% SDS in a total volume of 25 µl.
2. Arrays were printed onto (3-Glycidyloxypropyl)trimethoxysilane (Sigma) activated glas slides using a contact-spotter (QArray 2, Moleculare Devices).
3. After spotting arrays were incubated overnight at 4°C in a humidified atmosphere and subsequently dried for 30 min at 30°C.
4. Arrays were stored in a dry atmosphere at room temperature until use.
 
 
Submission date Oct 19, 2022
Last update date Oct 19, 2022
Contact name Zoya Ignatova
E-mail(s) zoya.ignatova@chemie.uni-hamburg.de
Organization name Universitaet Hamburg
Street address Martin -Luther-King-Platz 6
City Hamburg
ZIP/Postal code 20146
Country Germany
 
Samples (4) GSM6658491, GSM6658492, GSM6658493, GSM6658494
Series (1)
GSE216100 Structure of Escherichia coli heat shock protein Hsp15 in complex with ribosomal 50S sununits bearing peptidyl-tRNA

Data table header descriptions
ID Identity of detected tRNAs based on their anticodons and amino acid they bear
Codon Codons read by the detected tRNAs
Anticodon
SEQUENCE Probe sequences (5' to 3') are DNA oligonucleotides that cover each full-length tRNA.

Data table
ID Codon Anticodon SEQUENCE
Arg1e Arg-AGA Arg-UCU CGCGCCCTGCAGGATTCGAACCTGCGGCCCACGACTTAGAAGGTCGTTGCTCTATCCAACTGAGCTAAGGGCGC
Arg2e Arg-CGA/C/T Arg-ACG TGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGC
Arg3e Arg-CGG Arg-CCG CGCGCCCGACAGGATTCGAACCTGAGACCTCTGCCTCCGGAGGGCAGCGCTCTATCCAGCTGAGCTACGGGCGC
Arg4e Arg-AGG Arg-CCU TGTCCCCTGCAGGAATCGAACCTGCAATTAGCCCTTAGGAGGGGCTCGTTATATCCATTTAACTAAGAGGAC
His1e His-CAC/T His-GUG GGTGGCTAATGGGATTCGAACCCACGACAACTGGAATCACAATCCAGGGCTCTACCAACTGAGCTATAGCCAC
Lys1e Lys-AAA/G Lys-UUU TGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCC
Asp1e Asp-GAC/T Asp-GUC CGGAACGGACGGGACTCGAACCCGCGACCCCCTGCGTGACAGGCAGGTATTCTAACCGACTGAACTACCGCTCC
Glu1e Glu-GAA/G Glu-UUC CGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGAC
Asn1e Asn-AAC/T Asn-GUU CTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCTACCGACTGAACTACAGAGGA
Cys1e Cys-TGC/T Cys-GCA AGGCGCGTTCCGGAGTCGAACCGGACTAGACGGATTTGCAATCCGCTACATAACCGCTTTGTTAACGCGCC
Gln1e Gln-CAA/G Gln-C/UUG CTGGGGTACSWGGATTCGAACCWSGGAATGCCGGWATCARAAWCCGGTGCCTTACCGCTTGGCGATACCCCA
Ser1e Ser-TCG Ser-CGA AGGGGGATTTGAACCCCCGGTAGAGTTGCCCCTACTCCGGTTTTCGAGACCGGTCCGTTCAGCCGCTCCGGCATCTCTCC
Ser2e Ser-AGC/T Ser-GCU GGGATTCGAACCCCGGATGCAGCTTTTGACCGCATACTCCCTTAGCAGGGGAGCGCCTTCAGCCTCTCGGCCACCTCACC
Ser3e Ser-TCC/T Ser-GGA AGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACC
Ser4e Ser-TCA/G Ser-UGA GCGCAGAGATTCGAACTCTGGAACCCTTTCGGGTCGCCGGTTTTCAAGACCGGTGCCTTCAACCGCTCGGCCACACTTCC
Thr1e Thr-ACC/T Thr-GGU TGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGC
Thr2e Thr-ACG Thr-CGU TGCCGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAATGCGATGTTAATGCATTTTTAACTACTTGAGC
Thr3e Thr-ACA/G Thr-UGU TGCCGACTACCGGAATCGAACTGGTGACCTACTGATTACAAGTCAGTTGCTCTACCTACTGAGCTAAGTCGGC
Ala1e Ala-GCA/C/G/T Ala-G/UGC TGGAGCTAWGCGGGATCGAACCGCWGACCTCCTGCGTGCMAWGCARGCGCTCTCCCAGCTGAGCTATAGCCCC
Gly1e Gly-GGC/T Gly-GCC AGCGGGAAACGAGACTCGAACTCGCGACCCCGACCTTGGCAAGGTCGTGCTCTACCAACTGAGCTATTCCCGC

Total number of rows: 44

Table truncated, full table size 4 Kbytes.




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