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GEO help: Mouse over screen elements for information. |
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Status |
Public on Apr 30, 2007 |
Title |
HMC Human 29k Array |
Technology type |
spotted oligonucleotide |
Distribution |
non-commercial |
Organism |
Homo sapiens |
Manufacturer |
Human Microarray Centre |
Manufacture protocol |
Biochem Biophys Res Comm 2006; 344: 1111-1120
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Contributor(s) |
Thomassen M, Tan Q, Eiriksdottir F, Bak M, Cold S, Kruse TA |
Submission date |
May 08, 2006 |
Last update date |
Apr 30, 2007 |
Contact name |
Mads Thomassen |
E-mail(s) |
mads.thomassen@ouh.fyns-amt.dk
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Phone |
+4565412839
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Fax |
+4565411911
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Organization name |
Odense University Hospital
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Department |
Clinical Genetics (KKA)
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Street address |
Soender Boulevard 9
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City |
Odense |
ZIP/Postal code |
DK-5000 |
Country |
Denmark |
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Samples (60)
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GSM108111, GSM108112, GSM108113, GSM108114, GSM108115, GSM108117
GSM108119, GSM108121, GSM108123, GSM108126, GSM108127, GSM108130, GSM108132, GSM108133, GSM108134, GSM108135, GSM108136, GSM108137, GSM108138, GSM108139, GSM108140, GSM108141, GSM108142, GSM108145, GSM108148, GSM108150, GSM108205, GSM108206, GSM108207, GSM108208, GSM108210, GSM108215, GSM108219, GSM108220, GSM108222, GSM108223, GSM108224, GSM108226, GSM108227, GSM108229, GSM108230, GSM108232, GSM108233, GSM108234, GSM108236, GSM108237, GSM108238, GSM108239, GSM108241, GSM108242, GSM108243, GSM108244, GSM108245, GSM108246, GSM108247, GSM108248, GSM108249, GSM108250, GSM108251, GSM108253
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Series (1) |
GSE4796 |
Prediction of metastasis from low-malignant breast cancer by gene expression profiling |
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Data table header descriptions |
ID |
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GENE_Symbol |
Gene symbol |
GB_ACC |
GenBank accession number |
UNIGENE |
Unigene cluster |
COMPUGENE_ID |
targets desigend by Compugene have a unique number. Furthermore, the 70 gene signature reported by van't Veer is indicated |
Gene |
Gene name |
Function |
Gene ontology |
Data table |
ID |
GENE_Symbol |
GB_ACC |
UNIGENE |
COMPUGENE_ID |
Gene |
Function |
1 |
GAPDH |
M33197 |
Hs.169476 |
CGEN_HUMCTRL_10001_1_303 |
Human glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mRNA |
positive_control [positive_control] |
2 |
RGS7 |
NM_002924 |
Hs.79348 |
CGEN_HUMAN_LIB2_6010300001_0 |
Homo sapiens regulator of G-protein signalling 7 (RGS7), mRNA. |
cellular process [0009987] |
3 |
UNC13 |
NM_006377 |
Hs.155001 |
CGEN_HUMAN_LIB2_6010300002_0 |
Homo sapiens unc-13-like (C. elegans) (UNC13), mRNA. |
cellular process [0009987] |
4 |
SCN10A |
NM_006514 |
Hs.250443 |
CGEN_HUMAN_LIB2_6010300003_0 |
Homo sapiens sodium channel, voltage-gated, type X, alpha polypeptide (SCN10A), mRNA. |
cellular process [0009987] |
5 |
EPS8 |
NM_004447 |
Hs.2132 |
CGEN_HUMAN_LIB2_6010300004_0 |
Homo sapiens epidermal growth factor receptor pathway substrate 8 (EPS8), mRNA. |
cellular process [0009987] |
6 |
FGF3 |
NM_005247 |
Hs.37092 |
CGEN_HUMAN_LIB2_6010300005_0 |
Homo sapiens fibroblast growth factor 3 (murine mammary tumor virus integration site (v-int-2) oncogene homolog) (FGF3), mRNA. |
cellular process [0009987] |
7 |
TNFSF13B |
NM_006573 |
Hs.270737 |
CGEN_HUMAN_LIB2_6010300006_0 |
Homo sapiens tumor necrosis factor (ligand) superfamily, member 13b (TNFSF13B), mRNA. |
cellular process [0009987] |
8 |
GML |
NM_002066 |
Hs.86161 |
CGEN_HUMAN_LIB2_6010300007_0 |
Homo sapiens GPI anchored molecule like protein (GML), mRNA. |
cellular process [0009987] |
9 |
RAMP3 |
NM_005856 |
Hs.25691 |
CGEN_HUMAN_LIB2_6010300008_0 |
Homo sapiens receptor (calcitonin) activity modifying protein 3 (RAMP3), mRNA. |
cellular process [0009987] |
10 |
FLNC |
NM_001458 |
Hs.58414 |
CGEN_HUMAN_LIB2_6010300009_0 |
Homo sapiens filamin C, gamma (actin binding protein 280) (FLNC), mRNA. |
cellular process [0009987] |
11 |
IL17 |
NM_002190 |
Hs.41724 |
CGEN_HUMAN_LIB2_6010300010_0 |
Homo sapiens interleukin 17 (cytotoxic T-lymphocyte-associated serine esterase 8) (IL17), mRNA. |
cellular process [0009987] |
12 |
EREG |
NM_001432 |
Hs.115263 |
CGEN_HUMAN_LIB2_6010300011_0 |
Homo sapiens epiregulin (EREG), mRNA. |
cellular process [0009987] |
13 |
ARHI |
NM_004675 |
Hs.194695 |
CGEN_HUMAN_LIB2_6010300012_0 |
Homo sapiens ras homolog gene family, member I (ARHI), mRNA. |
cellular process [0009987] |
14 |
RIMS1 |
NM_014989 |
Hs.302136 |
CGEN_HUMAN_LIB2_6010300013_0 |
Homo sapiens regulating synaptic membrane exocytosis 1 (RIMS1), mRNA. |
cellular process [0009987] |
15 |
IL12RB2 |
NM_001559 |
Hs.73165 |
CGEN_HUMAN_LIB2_6010300014_0 |
Homo sapiens interleukin 12 receptor, beta 2 (IL12RB2), mRNA. |
cellular process [0009987] |
16 |
SH3BP4 |
NM_014521 |
Hs.17667 |
CGEN_HUMAN_LIB2_6010300015_0 |
Homo sapiens SH3-domain binding protein 4 (SH3BP4), mRNA. |
cellular process [0009987] |
17 |
CRB1 |
NM_012076 |
Hs.169745 |
CGEN_HUMAN_LIB2_6010300016_0 |
Homo sapiens crumbs homolog 1 (Drosophila) (CRB1), mRNA. |
cellular process [0009987] |
18 |
BTG4 |
NM_017589 |
Hs.128180 |
CGEN_HUMAN_LIB2_6010300017_0 |
Homo sapiens B-cell translocation gene 4 (BTG4), mRNA. |
cellular process [0009987] |
19 |
HCN4 |
NM_005477 |
Hs.225671 |
CGEN_HUMAN_LIB2_6010300018_0 |
Homo sapiens hyperpolarization activated cyclic nucleotide-gated potassium channel 4 (HCN4), mRNA. |
cellular process [0009987] |
20 |
GLRA1 |
NM_000171 |
Hs.121490 |
CGEN_HUMAN_LIB2_6010300019_0 |
Homo sapiens glycine receptor, alpha 1 (startle disease/hyperekplexia, stiff man syndrome) (GLRA1), mRNA. |
cellular process [0009987] |
Total number of rows: 28931
Table truncated, full table size 4140 Kbytes.
Supplementary data files not provided |
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