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Platform GPL3923 Query DataSets for GPL3923
Status Public on Aug 04, 2006
Title Affymetrix Drosophila Melanogaster Antisense Tiling Array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Drosophila melanogaster
Manufacturer Affymetrix
Manufacture protocol See manufacturer's website.
Catalog number 520054
 
Description 35bp Resolution Oligonucleotide Tiling Array
Annotation in this record is based on BDGP Release 4, Apr 2004 version
Keywords: synthetic, oligonucleotide, tiling array
 
Web link http://www.affymetrix.com
Submission date Jun 26, 2006
Last update date Dec 21, 2007
Contact name Thomas R Gingeras
E-mail(s) tom_gingeras@affymetrix.com
Organization name Affymetrix, Inc.
Street address 3380 Central Expressway
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (22) GSM119342, GSM119343, GSM119344, GSM119345, GSM119346, GSM119347 
Series (3)
GSE5434 Comprehensive identification of Drosophila dorsal-ventral patterning genes using a whole-genome tiling array
GSE5514 Expression profile of the first 24 hrs of Drosophila embryonic development using tiling arrays
GSE7569 Chromatin immunoprecipitation (ChIP) assay of CWO protein with Drosophila genome tiling array

Data table header descriptions
ID
CHIP_COORD chip coordinate
SEQUENCE probe sequence
RANGE_GB chromosome accession and version upon which probes are mapped
RANGE_START start position of mapped probe relative to RANGE_GB
RANGE_END end position of mapped probe relative to RANGE_GB
RANGE_STRAND chromosomal stand

Data table
ID CHIP_COORD SEQUENCE RANGE_GB RANGE_START RANGE_END RANGE_STRAND
x985_y567_chr2L_89 x985_y567 TGCGAGAGTAGTGCCAACATATTGT NT_033779.3 89 113 +
x986_y567_chr2L_89 x986_y567 TGCGAGAGTAGTGCCAACATATTGT NT_033779.3 89 113 +
x987_y567_chr2L_89 x987_y567 TGCGAGAGTAGTGCCAACATATTGT NT_033779.3 89 113 +
x988_y567_chr2L_89 x988_y567 TGCGAGAGTAGTGCCAACATATTGT NT_033779.3 89 113 +
x989_y567_chr2L_89 x989_y567 TGCGAGAGTAGTGCCAACATATTGT NT_033779.3 89 113 +
x990_y567_chr2L_89 x990_y567 TGCGAGAGTAGTGCCAACATATTGT NT_033779.3 89 113 +
x991_y567_chr2L_89 x991_y567 TGCGAGAGTAGTGCCAACATATTGT NT_033779.3 89 113 +
x992_y567_chr2L_89 x992_y567 TGCGAGAGTAGTGCCAACATATTGT NT_033779.3 89 113 +
x1938_y565_chr2L_89 x1938_y565 TGCGAGAGTAGTGCCAACATATTGT NT_033779.3 89 113 +
x1939_y565_chr2L_89 x1939_y565 TGCGAGAGTAGTGCCAACATATTGT NT_033779.3 89 113 +
x401_y411_chr2L_158 x401_y411 GATGATAATATATTCAAGTTGCCGC NT_033779.3 158 182 +
x2176_y803_chr2L_162 x2176_y803 ATAATATATTCAAGTTGCCGCTAAT NT_033779.3 162 186 +
x2177_y803_chr2L_162 x2177_y803 ATAATATATTCAAGTTGCCGCTAAT NT_033779.3 162 186 +
x2178_y803_chr2L_162 x2178_y803 ATAATATATTCAAGTTGCCGCTAAT NT_033779.3 162 186 +
x2179_y803_chr2L_162 x2179_y803 ATAATATATTCAAGTTGCCGCTAAT NT_033779.3 162 186 +
x2180_y803_chr2L_162 x2180_y803 ATAATATATTCAAGTTGCCGCTAAT NT_033779.3 162 186 +
x2181_y803_chr2L_162 x2181_y803 ATAATATATTCAAGTTGCCGCTAAT NT_033779.3 162 186 +
x2182_y803_chr2L_162 x2182_y803 ATAATATATTCAAGTTGCCGCTAAT NT_033779.3 162 186 +
x2183_y803_chr2L_162 x2183_y803 ATAATATATTCAAGTTGCCGCTAAT NT_033779.3 162 186 +
x2184_y803_chr2L_162 x2184_y803 ATAATATATTCAAGTTGCCGCTAAT NT_033779.3 162 186 +

Total number of rows: 3214785

Table truncated, full table size 292626 Kbytes.




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