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Status
Public on Oct 01, 2006
Title
SLVG E.coli_Shigella 6.5K array
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organisms
Escherichia coli K-12 ; Shigella flexneri 2a str. 301 ; Shigella dysenteriae Sd197 ; Shigella boydii Sb227 ; Shigella sonnei Ss046 Manufacturer
State key laboratory for molecular virology and genetic engineering,China CDC
Manufacture protocol
The PCR products were spotted onto glass slides to make DNA arrays as described in MGUIDE at http://cmgm.stanford.edu/pbrown/mguide/index.html and protocols on http://www.microarrays.org/
Description
A microarray with 6528 spot features.
Contributor(s)
Jin Q , Peng J Submission date
Jun 26, 2006
Last update date
Oct 01, 2006
Contact name
Junping Peng
E-mail(s)
pengjp@gmail.com Organization name
Chinese center for disease control and prevention
Lab
State key lab for molecular virology and genetic engineering
Street address
No 6, Rongjing Eastern Street, BDA
City
Beijing
ZIP/Postal code
100176
Country
China
Samples (117)
GSM118082 , GSM118083 , GSM118084 , GSM118085 , GSM118086 , GSM118087
GSM118088 ,
GSM118089 ,
GSM118090 ,
GSM118091 ,
GSM118092 ,
GSM118093 ,
GSM118094 ,
GSM118122 ,
GSM118123 ,
GSM118124 ,
GSM118125 ,
GSM118126 ,
GSM118127 ,
GSM118128 ,
GSM118129 ,
GSM118130 ,
GSM118131 ,
GSM118132 ,
GSM118133 ,
GSM118134 ,
GSM118135 ,
GSM118136 ,
GSM118137 ,
GSM118138 ,
GSM118139 ,
GSM118140 ,
GSM118141 ,
GSM118142 ,
GSM118143 ,
GSM118144 ,
GSM118145 ,
GSM118146 ,
GSM118147 ,
GSM118148 ,
GSM118149 ,
GSM118150 ,
GSM118151 ,
GSM118152 ,
GSM118153 ,
GSM118154 ,
GSM118155 ,
GSM118156 ,
GSM118157 ,
GSM118158 ,
GSM118159 ,
GSM118160 ,
GSM118161 ,
GSM118162 ,
GSM118163 ,
GSM118164 ,
GSM118165 ,
GSM118166 ,
GSM118167 ,
GSM118168 ,
GSM118169 ,
GSM118170 ,
GSM118171 ,
GSM118172 ,
GSM118173 ,
GSM118174 ,
GSM118175 ,
GSM118176 ,
GSM118177 ,
GSM118178 ,
GSM118179 ,
GSM118180 ,
GSM118181 ,
GSM118182 ,
GSM118183 ,
GSM118184 ,
GSM118185 ,
GSM118186 ,
GSM118187 ,
GSM118188 ,
GSM118189 ,
GSM118190 ,
GSM118191 ,
GSM118192 ,
GSM118193 ,
GSM118194 ,
GSM118195 ,
GSM118196 ,
GSM118197 ,
GSM118198 ,
GSM118199 ,
GSM118200 ,
GSM118201 ,
GSM118202 ,
GSM118203 ,
GSM118204 ,
GSM118205 ,
GSM118206 ,
GSM118207 ,
GSM118208 ,
GSM118209 ,
GSM118210 ,
GSM118211 ,
GSM118212 ,
GSM118213 ,
GSM118214 ,
GSM118215 ,
GSM118216 ,
GSM118217 ,
GSM118218 ,
GSM118242 ,
GSM118243 ,
GSM118244 ,
GSM118245 ,
GSM118246 ,
GSM118247 ,
GSM118248 Series (1)
Data table header descriptions ID Block Array spot block coordinate
Row Array spot row coordinate
Column Array spot column coordinate
ORF Unique ID for gene represented by spot from NCBI for Escherichia coli K-12 MG1655, Shigella dysenteriae Sd197 serotype 1, Shigella boydii Sb227 serotype 4, Shigella flexneri sf301 serotype 2a and Shigella sonnei Ss046
ORGANISM Escherichia coli K-12, Shigella dysenteriae Sd197, Shigella boydii Sb227, Shigella flexneri 2a str. 301, and Shigella sonnei Ss046
GENE_SYMBOL Name of the gene represented by the sequence in the spot/feature
GENE_DESC Description of gene represented by spot from NCBI for Escherichia coli K-12 MG1655, Shigella dysenteriae Sd197 serotype 1, Shigella boydii Sb227 serotype 4, Shigella flexneri sf301 serotype 2a and Shigella sonnei Ss046
SPOT_ID Spot identifier
Data table ID Block Row Column ORF ORGANISM GENE_SYMBOL GENE_DESC SPOT_ID 1
1
1
1
b0083 Escherichia coli K-12
ftsL
cell division protein; ingrowth of wall at septum
2
1
1
2
b0089 Escherichia coli K-12
ftsW
cell division; membrane protein involved in shape determination
3
1
1
3
b0094 Escherichia coli K-12
ftsA
ATP-binding cell division protein, septation process, complexes with FtsZ, associated with junctions of inner and outer membranes
4
1
1
4
b0095 Escherichia coli K-12
ftsZ
cell division; forms circumferential ring; tubulin-like GTP-binding protein and GTPase
5
1
1
5
b0188 Escherichia coli K-12
mesJ
cell cycle protein
6
1
1
6
b0232 Escherichia coli K-12
yafN
orf, hypothetical protein
7
1
1
7
b0624 Escherichia coli K-12
crcB
orf, hypothetical protein
8
1
1
8
b0634 Escherichia coli K-12
mrdB
rod shape-determining membrane protein; sensitivity to radiation and drugs
9
1
1
9
b0890 Escherichia coli K-12
ftsK
cell division protein
10
1
1
10
b0922 Escherichia coli K-12
mukF
mukF protein (killing factor KICB)
11
1
1
11
b0923 Escherichia coli K-12
mukE
orf, hypothetical protein
12
1
1
12
b0924 Escherichia coli K-12
mukB
kinesin-like cell division protein involved in chromosome partitioning
13
1
1
13
b0958 Escherichia coli K-12
sulA
suppressor of lon; inhibits cell division and ftsZ ring formation
14
1
1
14
b0981 Escherichia coli K-12
yccC
orf, hypothetical protein
15
1
1
15
b1087 Escherichia coli K-12
yceF
orf, hypothetical protein
16
1
1
16
b1174 Escherichia coli K-12
minE
cell division topological specificity factor, reverses MinC inhibition of ftsZ ring formation
17
1
1
17
b1175 Escherichia coli K-12
minD
cell division inhibitor, a membrane ATPase, activates minC
18
1
1
18
b1176 Escherichia coli K-12
minC
cell division inhibitor, inhibits ftsZ ring formation
19
1
1
19
b1254 Escherichia coli K-12
yciB
orf, hypothetical protein
20
1
1
20
b1344 Escherichia coli K-12
ydaO
orf, hypothetical protein
6528 460 Kbytes .Supplementary data files not provided
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