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Platform GPL4130 Query DataSets for GPL4130
Status Public on Aug 17, 2006
Title Agilent-014741 Yeast Whole Genome ChIP-on-Chip Microarray 244K (G4491A)
Technology type in situ oligonucleotide
Distribution commercial
Organism Saccharomyces cerevisiae
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G4491A
 
Description
Yeast Whole Genome ChIP-on-Chip Set 244K

Arrays of this design have barcodes that begin with 16014741 or 2514741.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Aug 17, 2006
Last update date Feb 05, 2015
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (97) GSM205822, GSM438101, GSM438102, GSM438103, GSM438104, GSM438105 
Series (15)
GSE8299 Genome-wide Replication-independent H3 Exchange Occurs Predominantly at Promoters and Implicates H3K56ac and Asf1
GSE17583 Control of expression noise, fitness and gene aggregation by a component of the yeast pheromone response pathway
GSE22626 Topoisomerase II binds nucleosome-free DNA and acts redundantly with Topoisomerase I to enhance recruitment of RNA Pol II in budding yeast

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GB_RANGE Accession.Version[start..end] (based on SGD October 2003 genome sequence)

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GB_RANGE
1 267 912 ScCGHBrightCorner pos
2 267 910 DarkCorner pos
3 267 908 DarkCorner pos
4 267 906 A_75_P01631507 FALSE ARP3 sgd|YJR065C|sgd|ARP3:28 chr10:000558802-000558847 INSIDE NC_001142.4[000558802..000558847]
5 267 904 A_75_P01942789 FALSE NPR1 sgd|YNL183C|sgd|NPR1:767 chr14:000294711-000294768 INSIDE NC_001146.1[000294711..000294768]
6 267 902 A_75_P01128323 FALSE SRB8 sgd|YCR081W|sgd|SRB8:2981 chr3:000257315-000257374 INSIDE NC_001135.2[000257315..000257374]
7 267 900 A_75_P01275526 FALSE VPS60 sgd|YDR486C|sgd|VPS60:548 chr4:001427538-001427582 INSIDE NC_001136.4[001427538..001427582]
8 267 898 A_75_P01074012 FALSE IRA1 sgd|YBR140C|sgd|IRA1:7569 chr2:000518985-000519043 INSIDE NC_001134.4[000518985..000519043]
9 267 896 A_75_P01416196 FALSE PDR1-ERG4 sgd|YGL013C|sgd|YGL012W|sgd|PDR1:-118|sgd|ERG4:-438 chr7:000472393-000472445 DIVERGENT_PROMOTER NC_001139.3[000472393..000472445]
10 267 894 A_75_P02120866 FALSE NIP100 sgd|YPL174C|sgd|NIP100:2395 chr16:000220350-000220405 INSIDE NC_001148.2[000220350..000220405]
11 267 892 A_75_P01544438 FALSE STH1 sgd|YIL126W|sgd|STH1:28 chr9:000117991-000118047 INSIDE NC_001141.1[000117991..000118047]
12 267 890 A_75_P01451236 FALSE TIF4631 sgd|YGR162W|sgd|TIF4631:2828 chr7:000826859-000826918 INSIDE NC_001139.3[000826859..000826918]
13 267 888 A_75_P01935297 FALSE ELA1 sgd|YNL230C|sgd|ELA1:-169|sgd|YNL231C:-1789|sgd|YNL229C:1370|sgd|YNL227C:3600 chr14:000218802-000218858 PROMOTER NC_001146.1[000218802..000218858]
14 267 886 A_75_P02145018 FALSE CAM1 sgd|YPL048W|sgd|CAM1:1141 chr16:000465507-000465566 INSIDE NC_001148.2[000465507..000465566]
15 267 884 A_75_P02074104 FALSE TPO4-MOD5 sgd|YOR273C|sgd|YOR274W|sgd|TPO4:-987|sgd|MOD5:-255|sgd|YOR275C:3651 chr15:000837386-000837445 DIVERGENT_PROMOTER NC_001147.3[000837386..000837445]
16 267 882 A_75_P01327431 FALSE YER130C sgd|YER130C|sgd|YER130C:1262 chr5:000421151-000421210 INSIDE NC_001137.2[000421151..000421210]
17 267 880 A_75_P01946935 FALSE YGP1 sgd|YNL160W|sgd|YGP1:183 chr14:000336695-000336753 INSIDE NC_001146.1[000336695..000336753]
18 267 878 A_75_P01176090 FALSE ERP3 sgd|YDL018C|sgd|ERP3:582 chr4:000422895-000422954 INSIDE NC_001136.4[000422895..000422954]
19 267 876 A_75_P01617007 FALSE VTC4 sgd|YJL012C|sgd|VTC4:816 chr10:000412249-000412305 INSIDE NC_001142.4[000412249..000412305]
20 267 874 A_75_P02170165 FALSE YPR091C sgd|YPR091C|sgd|YPR091C:-254|sgd|YPR094W:-1914|sgd|YPR093C:1702 chr16:000718689-000718748 PROMOTER NC_001148.2[000718689..000718748]

Total number of rows: 243504

Table truncated, full table size 34370 Kbytes.




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