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Platform GPL4183 Query DataSets for GPL4183
Status Public on Aug 22, 2006
Title ORF_intergenic_J
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Saccharomyces cerevisiae
Manufacturer Stanford Microarray Database (SMD)
Manufacture protocol Tip Configuration: Standard 32-tip
Columns per Sector: 24
 
 
Contributor(s) Lieb JD
Submission date Aug 18, 2006
Last update date Aug 30, 2006
Contact name Jason D Lieb
E-mail(s) jlieb@bio.unc.edu
Phone 919-843-3229
URL http://www.bio.unc.edu/faculty/lieb/labpages/default.shtml
Organization name University of North Carolina at Chapel Hill
Department Biology
Lab Jason Lieb
Street address 203 Fordham Hall
City Chapel Hill
State/province NC
ZIP/Postal code 27599
Country USA
 
Samples (15) GSM132351, GSM132352, GSM132355, GSM132356, GSM132357, GSM132358 
Series (4)
GSE5648 Genomewide demarcation of RNA PolII transcription units by physical fractionation of chromatin- Intergenic enrichment
GSE5650 Genomewide demarcation of RNA PolII transcription units by physical fractionation of chromatin- ORF-INT enrichment
GSE5651 Genomewide demarcation of RNA PolII transcription units by physical fractionation of chromatin- Neutral enrichment

Data table header descriptions
ID unique spot identifier
ORF Systematic ORF name
SPOT_ID Spot identifier
GENE_NAME gene name
CHROMOSOME chromosome number
STRAND genomic DNA strand upon which gene sequence is placed
BEG_COORD beginning coordinate of gene sequence on genomic DNA
END_COORD ending coordinate of gene sequence on genomic DNA
PROCESS gene process
FUNCTION gene function
SECTOR sector of spot print location
SECTORROW sector row of spot print location
SECTORCOL sector column of spot print location
PLATE clone plate number
PROW clone plate row
PCOL clone plate column
FAILED failed
IS_CONTAMINATED contaminated

Data table
ID ORF SPOT_ID GENE_NAME CHROMOSOME STRAND BEG_COORD END_COORD PROCESS FUNCTION SECTOR SECTORROW SECTORCOL PLATE PROW PCOL FAILED IS_CONTAMINATED
1 YAL001C TFC3 1 C 151168 147596 transcription initiation from RNA polymerase III promoter RNA polymerase III transcription factor activity 1 1 1 1 A 1 0 U
2 YAL003W EFB1 1 W 142176 143162 translational elongation translation elongation factor activity 1 1 2 1 A 5 0 U
3 YAL005C SSA1 1 C 141433 139505 protein folding ATPase activity 1 1 3 1 A 9 0 U
4 YAL008W FUN14 1 W 136916 137512 biological process unknown molecular function unknown 1 1 4 1 A 13 0 U
5 YAL010C MDM10 1 C 135667 134186 protein complex assembly molecular function unknown 1 1 5 1 A 17 0 U
6 YAL012W CYS3 1 W 130802 131986 sulfur amino acid metabolism cystathionine gamma-lyase activity 1 1 6 1 A 21 0 U
7 YAL048C GEM1 1 C 54790 52802 vesicle-mediated transport GTPase activity 1 1 7 1 I 1 0 U
8 YAL051W OAF1 1 W 48565 51708 peroxisome organization and biogenesis DNA binding 1 1 8 1 I 5 1 U
9 YAL054C ACS1 1 C 45023 42882 acetyl-CoA biosynthesis acetate-CoA ligase activity 1 1 9 1 I 9 0 U
10 YAL056W GPB2 1 W 39260 41902 signal transduction signal transducer activity 1 1 10 1 I 13 1 U
11 YAL059W ECM1 1 W 36510 37148 cell wall organization and biogenesis molecular function unknown 1 1 11 1 I 17 0 U
12 YAL061W 1 W 33449 34702 biological process unknown oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 1 1 12 1 I 21 0 U
13 YBR160W CDC28 2 W 560072 560968 protein amino acid phosphorylation cyclin-dependent protein kinase activity 1 1 13 8828 A 1 0 U
14 YBR162C TOS1 2 C 564565 563198 biological process unknown molecular function unknown 1 1 14 8828 A 5 0 U
15 YBR163W DEM1 2 W 565718 567475 biological process unknown molecular function unknown 1 1 15 8828 A 9 0 U
16 YBR165W UBS1 2 W 568847 569680 protein-nucleus export molecular function unknown 1 1 16 8828 A 13 0 U
17 YBR167C POP7 2 C 571885 571463 rRNA processing ribonuclease P activity 1 1 17 8828 A 17 0 U
18 YBR169C SSE2 2 C 575991 573910 protein folding molecular function unknown 1 1 18 8828 A 21 0 U
19 YBR207W FTH1 2 W 635141 636538 endocytosis iron ion transporter activity 1 1 19 8828 I 1 0 U
20 YBR209W 2 W 642578 642895 1 1 20 8828 I 5 0 U

Total number of rows: 16896

Table truncated, full table size 1224 Kbytes.






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