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Platform GPL4704 Query DataSets for GPL4704
Status Public on Jan 25, 2007
Title Nimblegen Human 5K promoter array 1
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Nimblegen Systems
Manufacture protocol described at Nimblegen http://www.nimblegen.com
 
 
Submission date Dec 28, 2006
Last update date Mar 24, 2008
Contact name Victor X Jin
E-mail(s) victor.jin@osumc.edu
Phone 614-2926931
Organization name OSU Medical Center
Department Biomedical Informatics
Street address 333 West 10th Ave
City Columbus
State/province OH
ZIP/Postal code 43210
Country USA
 
Samples (50) GSM153615, GSM153617, GSM153619, GSM153622, GSM153724, GSM153726 
Series (6)
GSE6625 Identification of genes directly regulated by the oncogene ZNF217 using ChIP-chip assays (Promoter Arrays)
GSE6634 Genes Directly Regulated by the Oncogene ZNF217 Using ChIP-chip Assays on ENCODE and Promoter Arrays and Expression Data
GSE8667 Genome-wide Analysis of KAP1 Binding Suggests Auto-regulation of KRAB-ZNFs

Data table header descriptions
ID
GENE_SYMBOL GenBank annotated Gene Symbol
GENE_ID GenBank annotated Gene ID
GENBANK_ACC GenBank chromosome identifier (hg17)
NG_PROMOTER NimbleGen internal promoter name within this array
CHROMOSOME chromsome number
RANGE_STRAND always plus
RANGE_START startpoint in genbank chromosome
RANGE_END endpoint in genbank chromosome
RANGE_GB
SPOT_ID "NA" spots

Data table
ID GENE_SYMBOL GENE_ID GENBANK_ACC NG_PROMOTER CHROMOSOME RANGE_STRAND RANGE_START RANGE_END RANGE_GB SPOT_ID
HG17PR0406S00001_CHR1P00004809 374666 BC063682 HG17PR0406S00001 chr1 + 4808 5008 NC_000001.8
HG17PR0406S00001_CHR1P00004919 374666 BC063682 HG17PR0406S00001 chr1 + 4918 4998 NC_000001.8
HG17PR0406S00001_CHR1P00005029 374666 BC063682 HG17PR0406S00001 chr1 + 5028 5108 NC_000001.8
HG17PR0406S00001_CHR1P00005220 374666 BC063682 HG17PR0406S00001 chr1 + 5219 5499 NC_000001.8
HG17PR0406S00001_CHR1P00005330 374666 BC063682 HG17PR0406S00001 chr1 + 5329 5549 NC_000001.8
HG17PR0406S00001_CHR1P00005440 374666 BC063682 HG17PR0406S00001 chr1 + 5439 5639 NC_000001.8
HG17PR0406S00001_CHR1P00005550 374666 BC063682 HG17PR0406S00001 chr1 + 5549 5629 NC_000001.8
HG17PR0406S00001_CHR1P00005660 374666 BC063682 HG17PR0406S00001 chr1 + 5659 5779 NC_000001.8
HG17PR0406S00001_CHR1P00005770 374666 BC063682 HG17PR0406S00001 chr1 + 5769 5809 NC_000001.8
HG17PR0406S00001_CHR1P00005880 374666 BC063682 HG17PR0406S00001 chr1 + 5879 6159 NC_000001.8
HG17PR0406S00001_CHR1P00005990 374666 BC063682 HG17PR0406S00001 chr1 + 5989 6269 NC_000001.8
HG17PR0406S00001_CHR1P00006100 374666 BC063682 HG17PR0406S00001 chr1 + 6099 6139 NC_000001.8
HG17PR0406S00001_CHR1P00006210 374666 BC063682 HG17PR0406S00001 chr1 + 6209 6393 NC_000001.8
HG17PR0406S00001_CHR1P00006373 374666 BC063682 HG17PR0406S00001 chr1 + 6372 6750 NC_000001.8
HG17PR0406S00001_CHR1P00006483 374666 BC063682 HG17PR0406S00001 chr1 + 6482 6682 NC_000001.8
HG17PR0406S00001_CHR1P00006614 374666 BC063682 HG17PR0406S00001 chr1 + 6613 6828 NC_000001.8
HG17PR0406S00001_CHR1P00006724 374666 BC063682 HG17PR0406S00001 chr1 + 6723 7003 NC_000001.8
HG17PR0406S00001_CHR1P00006834 374666 BC063682 HG17PR0406S00001 chr1 + 6833 6993 NC_000001.8
HG17PR0406S00001_CHR1P00006944 374666 BC063682 HG17PR0406S00001 chr1 + 6943 7223 NC_000001.8
HG17PR0406S00001_CHR1P00007054 374666 BC063682 HG17PR0406S00001 chr1 + 7053 7253 NC_000001.8

Total number of rows: 384877

Table truncated, full table size 40316 Kbytes.




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Supplementary data files not provided
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