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Platform GPL4723 Query DataSets for GPL4723
Status Public on Jan 11, 2007
Title SWEGENE_BAC_32K_Full
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Homo sapiens
Manufacturer Swegene DNA Microarray Resource Centre
Manufacture protocol Arrays were produced using amplified genomic DNA from BAC clones. Amplification was performed using degenerate oligonucleotide primed PCR and products were purified by size-exclusion filtration and verified by agarose gel electrophoresis. After purification, products were dried down, recovered in 50% DMSO to a concentration of 500-1000ng/┬Ál, and printed on amino-silane-coated glass slides (UltraGAPS from Corning) using a MicroGrid2 robot (BioRobotics) equipped with MicroSpot2500 pins (BioRobotics).
Support glass
Coating aminosilane
 
Description The 32k BAC Re-Array set Ver. 1.0 (32,433 BAC clones) was obtained from the BACPAC Resource Center at Children's Hospital Oakland Research Institute, Oakland (CA, US). The average resolution of the whole genome tiling clone set is 46kb. Clones were mapped to human genome build 17 (UCSC Human Genome Browser)
 
Web link http://swegene.onk.lu.se
Contributor(s) Borg A
Submission date Jan 05, 2007
Last update date May 21, 2007
Contact name Johan Staaf
Organization name SCIBLU - Swegene Centre for Integrative Biology at Lund University
Street address Medicon Village
City Lund
ZIP/Postal code SE-223 81
Country Sweden
 
Samples (1274) GSM155207, GSM155208, GSM155209, GSM155210, GSM155211, GSM155212 
Series (22)
GSE6746 High-resolution genomic profiles of breast cancer cell lines
GSE6779 Genomic Profiling of Malignant Melanoma using tiling resolution array CGH
GSE12439 Genomic profiling of chondrosarcoma: chromosomal patterns in central and peripheral tumors (BAC/CGH)

Data table header descriptions
ID
CLONE_ID Identifier ID for BAC clones
SPOT_ID Identifier for spots that do not contain BAC derived probes
CHR Chromosome (1-24) assigned to BAC clone
START Start base within chromosome assigned to BAC clone
END End base within chromosome assigned to BAC clone
ReporterID Reporter ID for spot, i.e., either CLONE_ID or SPOT_ID

Data table
ID CLONE_ID SPOT_ID CHR START END ReporterID
1 RP11-79K24 10 1302776 1474060 RP11-79K24
2 RP11-98A2 10 79302077 79456991 RP11-98A2
3 RP11-678O18 2 66531667 66763031 RP11-678O18
4 RP11-690I21 2 232329586 232541728 RP11-690I21
5 RP11-702K16 2 179176623 179359131 RP11-702K16
6 RP11-709C15 2 226876539 227069558 RP11-709C15
7 RP11-684M13 2 144675919 144853197 RP11-684M13
8 RP11-696A4 2 72852773 73025761 RP11-696A4
9 RP11-701A10 2 110575431 110736253 RP11-701A10
10 RP11-716C22 2 41861104 42001017 RP11-716C22
11 RP11-180M17 1 76646104 76799143 RP11-180M17
12 RP11-187B22 1 53987499 54166886 RP11-187B22
13 RP11-202B24 1 222298973 222485543 RP11-202B24
14 RP11-231H4 1 201861945 202042204 RP11-231H4
15 RP11-182J17 1 203953390 204153973 RP11-182J17
16 RP11-185C19 1 189875602 190024554 RP11-185C19
17 RP11-197I12 1 223322160 223518271 RP11-197I12
18 RP11-232A7 1 76774838 76950403 RP11-232A7
19 RP11-454H24 10 117303626 117503302 RP11-454H24
20 RP11-727P21 10 70997379 71176563 RP11-727P21

Total number of rows: 34992

Table truncated, full table size 1648 Kbytes.






Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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