Microarrays containing these oligos are synthesized on glass with Expedite DNA synthesizers (Applied Biosystems, Foster City, CA) in conjunction with Maskless Array Synthesis units (NimbleGen Systems, Madison, WI).
Tiling microarray of Oryza sativa japonica at 46nt resolution
Data table header descriptions
ID
X
X coordinate of the array feature
Y
Y coordinate of the array feature
CHROMOSOME
Chromosome from which the oligonucleotide sequence was selected
POSITION
Chromosome start position of the oligonucleotide from version 2 of TIGR rice pseudomolecules, similar but not equivalent to NC_008395.1
STRAND
Sense or antisense strand of the chromosome sequence represented by the oligonucleotide probe
SEQUENCE
DNA sequence of the oligonucleotide
FREQUENCY
Oligomer frequency calculated to determine the uniqueness of every 36mer subsequence in the genome. This measure was used to select probes that occur fewer than 5 times on average to reduce the potential for cross-hybridization.
