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Platform GPL5149 Query DataSets for GPL5149
Status Public on Nov 02, 2007
Title Agilent Homo sapiens 185K array
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Test array -- final design is Agilent-014068
 
 
Contributor(s) Greshock J, Feng B, Weber BL, Chin L
Submission date May 07, 2007
Last update date Nov 02, 2007
Contact name Joel Greshock
Organization name GlaxoSmithKline
Department Translational Medicine, Oncology
Street address 2301 Renaissance Blvd.
City King of Prussia
State/province PA
ZIP/Postal code 19406
Country USA
 
Samples (17) GSM188280, GSM188281, GSM188282, GSM188283, GSM188284, GSM188285 
Series (2)
GSE7822 A comparison of DNA copy number profiling platforms using a panel of melanoma cell lines
GSE13557 Screening for copy-number alterations and LOH in CLL - a comparative study of four microarray platforms

Data table header descriptions
ID
X X Coordinate location on microarray
Y Y Coordinate location on microarray
ROW Probe row number on microarray
COLUMN Probe column number on microarray
CONTROL_TYPE Control Type
CHROM Sequence aligned (chromosome)
RANGE_START Alignment start location (hg17; bp)
RANGE_END Alignment end location (hg17; bp)
GENE Gene alignment
GENE_DESC Gene Description
ANNOTATION Gene Annotation
RANGE_GB

Data table
ID X Y ROW COLUMN CONTROL_TYPE CHROM RANGE_START RANGE_END GENE GENE_DESC ANNOTATION RANGE_GB
A_14_P111240 4126.82 3489.78 384 130 FALSE chr2 113653787 113653846 PSD4 pleckstrin and Sec7 domain containing 4 ref|NM_012455 NC_000002.9
A_16_P14326175 716.439 2628.4 281 13 FALSE chr22 31190482 31190533 NC_000022.8
A_16_P11265797 4851.53 1144.58 104 155 FALSE chr4 147799800 147799852 C4orf13 chromosome 4 open reading frame 13 ref|NM_001029998|ref|NM_001030316|ref|NM_032128 NC_000004.9
A_16_P13379430 7275.68 2743.66 295 239 FALSE chr14 37896580 37896639 NC_000014.7
A_14_P114464 3298.68 1103.4 99 102 FALSE chr7 158063358 158063417 FAM62B family with sequence similarity 62 (C2 domain containing) member B ref|NM_020728 NC_000007.11
A_16_P11921983 10337.9 2382.41 252 344 FALSE chr7 32183968 32184027 NC_000007.11
A_14_P110003 3762.56 349.211 9 118 FALSE chr10 92913400 92913447 gb|BC007377|gb|BC051845 NC_000010.8
A_16_P13055762 11905.5 3219 352 398 FALSE chr12 50040197 50040248 GALNT6 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) ref|NM_007210 NC_000012.9
A_16_P10034191 3067.23 2460.33 261 94 FALSE chr1 20005942 20005995 NC_000001.8
A_16_P13499661 9785.9 1242.84 116 325 FALSE chr14 104271387 104271436 ADSSL1 adenylosuccinate synthase like 1 ref|NM_152328|ref|NM_199165 NC_000014.7
A_16_P12446199 10091.5 3412.5 375 336 FALSE chr9 92819121 92819165 FGD3 FYVE, RhoGEF and PH domain containing 3 ref|NM_033086 NC_000009.9
A_14_P113862 6318.5 1471.12 143 206 FALSE chr10 72211271 72211323 C10orf27 chromosome 10 open reading frame 27 ref|NM_152710 NC_000010.8
A_16_P12478661 3357.83 2460 261 104 FALSE chr9 111715656 111715715 NC_000009.9
A_16_P12912575 8959.55 2776.05 299 297 FALSE chr11 102101178 102101237 NC_000011.8
A_16_P10920636 1340.18 1664.36 166 34 FALSE chr3 115182190 115182249 KIAA1407 KIAA1407 ref|NM_020817 NC_000003.9
A_14_P126190 6215.29 1345.63 128 202 FALSE chr1 78652480 78652539 gb|BC035694|gb|BX537508 NC_000001.8
A_16_P12268187 7159.6 1387.03 133 235 FALSE chr8 100879128 100879187 VPS13B vacuolar protein sorting 13B (yeast) ref|NM_017890|ref|NM_152564 NC_000008.9
A_16_P12420138 2675.56 2904.72 314 80 FALSE chr9 76047345 76047404 NC_000009.9
A_14_P100727 8161.63 2316.97 244 269 FALSE chr1 193969184 193969243 CRB1 crumbs homolog 1 (Drosophila) ref|NM_201253 NC_000001.8
A_16_P13778080 9148.34 2868.41 310 303 FALSE chr17 343763 343820 NC_000017.9

Total number of rows: 182695

Table truncated, full table size 21043 Kbytes.




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Supplementary data files not provided

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