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Platform GPL530 Query DataSets for GPL530
Status Public on Oct 07, 2003
Title MWG Zebrafish 14K-1 Array
Technology type spotted oligonucleotide
Distribution commercial
Organism Danio rerio
Manufacturer MWG Biotech
Manufacture protocol see manufacturer's web site
 
Description Total number of spots: 14240 (14K-1 Array: 7296; 14K-2 Array: 6944). One oligonucleotide per gene. Additional EST clustering and annotation information. NCBI zebrafish ESTs were clustered with Paracel's transcript assembler (PTA 2.5.9). ORFs were annotated using framefinder (ESTate package 0.5.0) combined with protein similarity searches using BLASTP. Databases searched included genpept (release 128) and pir nref (release 1.0).
 
Web link http://ecom2.mwgdna.com/services/array/download
Submission date Oct 07, 2003
Last update date May 31, 2005
Organization MWG Biotech
E-mail(s) array@mwgbiotech.com
Phone 1-877-MWG-BTEC
Fax 1-336-812-9983
Street address 4170 Mendenhall Oaks Parkway, Suite 160
City High Point
State/province NC
ZIP/Postal code 27265
Country USA
 
Samples (2) GSM287608, GSM287609
Series (1)
GSE11391 Regenerating zebrafish fin fold vs. uncut control

Data table header descriptions
ID
metarow number of subarray row
metacolumn number of subarray column
row number of row within subarray
column number of column within subarray
oligo MWG oligo id
CLONE_ID MWG-assigned id
function gene function

Data table
ID metarow metacolumn row column oligo CLONE_ID function
1.1.1.1 1 1 1 1 mwgzebrafish#00001 NM_131651_1 novel immune-type receptor 3.1; nitr3.1
1.1.1.2 1 1 1 2 mwgzebrafish#00005 AL591405_6 novel immune-type receptor 1.8 (nitr1.8); sc:dz125j23.8
1.1.1.3 1 1 1 3 mwgzebrafish#00009 AL591391_9 novel immune-type receptor; sc:dz186f8.9
1.1.1.4 1 1 1 4 mwgzebrafish#00013 NM_131154_1 cytochrome p450, 19a; cyp19a
1.1.1.5 1 1 1 5 mwgzebrafish#00125 NM_131734_1 glutathione s-transferase pi; gstp1
1.1.1.6 1 1 1 6 mwgzebrafish#00129 AF246184_1 immunoglobulin light chain
1.1.1.7 1 1 1 7 mwgzebrafish#00133 AB006323_1 c-maf
1.1.1.8 1 1 1 8 mwgzebrafish#00137 U93471_1 nurr1
1.1.1.9 1 1 1 9 mwgzebrafish#00253 DRFRAMEFINDER00324 similar to genpept|aj238854|aj238854_1 heterogeneous nuclear ribonucleoprotein - rattus norvegicus
1.1.1.10 1 1 1 10 mwgzebrafish#00257 NM_131883_1 prosaposin; psap
1.1.1.11 1 1 1 11 mwgzebrafish#00261 DRFRAMEFINDER06099 similar to genpept|ay029528|ay029528_1 ranbp20 - mus musculus
1.1.1.12 1 1 1 12 mwgzebrafish#00265 AF246166_1 t-cell receptor alpha variable region
1.1.1.13 1 1 1 13 mwgzebrafish#00381 DRFRAMEFINDER01518 similar to genpept|x64587|x64587_2 splicing factor u2af - mus musculus
1.1.1.14 1 1 1 14 mwgzebrafish#00385 DRFRAMEFINDER10215 similar to genpept|af401558|af401558_1 ribosomal protein l6 - ictalurus punctatus
1.1.1.15 1 1 1 15 mwgzebrafish#00389 DRFRAMEFINDER09399 similar to genpept|x62146|x62146_1 ribosomal protein l11 - rattus rattus
1.1.2.1 1 1 2 1 mwgzebrafish#00393 DRFRAMEFINDER09646 similar to genpept|af005883|af005883_1 serine/threonine phosphatase; pp2a beta - takifugu rubripes
1.1.2.2 1 1 2 2 mwgzebrafish#00509 DRFRAMEFINDER04248 similar to genpept|af398883|af398883_1 elmo1 - mus musculus
1.1.2.3 1 1 2 3 mwgzebrafish#00513 DRFRAMEFINDER06296 similar to genpept|u59321|u59321_1 dead-box protein p72; p72 - homo sapiens
1.1.2.4 1 1 2 4 mwgzebrafish#00517 DRFRAMEFINDER01627 similar to genpept|u49509|u49509_1 dna polymerase gamma - xenopus laevis
1.1.2.5 1 1 2 5 mwgzebrafish#00521 DRFRAMEFINDER05495 similar to genpept|bc018667|bc018667_1 unknown protein for mgc:27140 - homo sapiens

Total number of rows: 7680

Table truncated, full table size 920 Kbytes.




Download family Format
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MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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