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Platform GPL5326 Query DataSets for GPL5326
Status Public on May 01, 2008
Title NCI Qiagen Homo sapiens 36K v3 cgh expression
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Homo sapiens
Manufacturer NHGRI Microarray Core
Manufacture protocol Human qiagen/operon version 3 longmer (~70-mer) spotted onto glass
Support glass
 
 
Contributor(s) Balleine RL, Webster LR, Davis SR, Salisbury EL, Walker RL, Byth K, Clarke CL, Meltzer PS
Submission date May 23, 2007
Last update date Jan 18, 2013
Contact name Sean Davis
E-mail(s) sdavis2@mail.nih.gov
Phone 301-435-2652
Organization name National Cancer Institute
Lab Genetics Branch
Street address 37 Convent Drive, Room 6138
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (111) GSM193822, GSM193823, GSM193824, GSM193825, GSM193826, GSM193827 
Series (1)
GSE7882 Gene Expression and Comparative Genomic Hybridization of Ductal Carcinoma In Situ of the Breast

Data table header descriptions
ID ID
PlatePos Plate position
oligo Oligo Identifier
chrom Chromosome (build 35)
strand Strand
tstart Chromosome start
tend Chromosome end
REFSEQ Refseq transcript(s) represented by this probe [|| separated]
GB_LIST GenBank accession numbers
SPOT_ID
enst Ensembl transcript(s) represented by this probe [|| separated]
unigene Unigene cluster(s) represented by this probe [|| separated]
gene_id Entrez Gene ID(s) [|| separated]
symbol_from_entrez_gene Gene symbol
description_from_entrez_gene Description

Data table
ID PlatePos oligo chrom strand tstart tend REFSEQ GB_LIST SPOT_ID enst unigene gene_id symbol_from_entrez_gene description_from_entrez_gene
1 HV3.84J15 H300018139 1 - 7187 7497 NM_199163||XM_377073||NM_198943 NM_199163, XM_377073, NM_198943 ENST00000338304||ENST00000327824||ENST00000330546||ENST00000326592||ENST00000354296||ENST00000331147||ENST00000285718||ENST00000326632||ENST00000359512 Hs.556396 374666||375260 FLJ25222||MGC52000 CXYorf1-related protein
2 HV3.30D19 H300006538 1 + 59367 59437 NM_001005484||NM_001005240||NM_001004195 NM_001005484, NM_001005240, NM_001004195 ENST00000335137||ENST00000326183||ENST00000318050 Hs.554179||Hs.554420||Hs.554500 26682||79501||81099 OR4F17||OR4F4||OR4F5 olfactory receptor, family 4, subfamily F, member 17||olfactory receptor, family 4, subfamily F, member 4||olfactory receptor, family 4, subfamily F, member 5
3 HV3.65D09 H300000312 1 - 93711 93781 XM_290777 XM_290777 ENST00000330342||ENST00000359170||ENST00000343799||ENST00000313146||ENST00000262432||ENST00000357883||ENST00000231188||ENST00000356454||ENST00000265344||ENST00000285013||ENST00000247618||ENST00000315967||ENST00000332811||ENST00000235632||ENST00000362054||ENST00000355550||ENST00000267199||ENST00000222803||ENST00000337843||ENST00000306113||ENST00000305786||ENST00000325589||ENST00000298664 Hs.306806||Hs.540984 114904||146857||154791||222658||23545||2916||339231||389840||55033||65082||65124||656||7095||84334||9818 ATP6V0A2||BMP8B||C14orf153||C1QTNF6||C2orf26||C6orf69||FKBP14||FLJ31952||GRM6||HSPC268||LOC339231||MAP3K15||NUPL1||TLOC1||VPS33A ATPase, H+ transporting, lysosomal V0 subunit a isoform 2||C1q and tumor necrosis factor related protein 6||FK506 binding protein 14, 22 kDa||bone morphogenetic protein 8b (osteogenic protein 2)||chromosome 14 open reading frame 153||chromosome 2 open reading frame 26||chromosome 6 open reading frame 69||glutamate receptor, metabotropic 6||hypothetical protein FLJ31952||hypothetical protein HSPC268||hypothetical protein LOC339231||mitogen-activated protein kinase kinase kinase 15||nucleoporin like 1||translocation protein 1||vacuolar protein sorting 33A (yeast)
4 HV3.79H20 H300003718 1 + 761271 761341 NA ENST00000332749||ENST00000358533 ENST00000332749||ENST00000358533 NA NA NA NA
5 HV3.68L09 H300000344 1 + 793381 793446 XM_379540 XM_379540 ENST00000326734 Hs.406174 157693 LOC157693 hypothetical protein LOC157693
6 HV3.32C07 H300005753 1 - 801958 802028 NM_024796 NM_024796 ENST00000326725 Hs.351445 79854 FLJ22639 hypothetical protein FLJ22639
7 HV3.68O07 H300006070 1 + 832499 832569 NA ENST00000326678 ENST00000326678 NA NA NA NA
8 HV3.25K21 H200019135 1 + 889566 889635 NA Hs.551839 NA Hs.551839 NA NA NA
9 HV3.22J08 H300001595 1 - 893373 893443 NA Hs.200644 NA Hs.200644 NA NA NA
10 HV3.50E18 H300007544 1 - 901156 901226 NM_152486 NM_152486 ENST00000338633 NA 148398 SAMD11 sterile alpha motif domain containing 11
11 HV3.66A16 H300014072 1 + 914582 914652 NM_152486 NM_152486 NA Hs.405987 148398 SAMD11 sterile alpha motif domain containing 11
12 HV3.20P21 H200021127 1 + 919713 919782 NM_152486 NM_152486 ENST00000342066 Hs.405987 148398 SAMD11 sterile alpha motif domain containing 11
13 HV3.46C10 H200013109 1 - 920026 920095 NM_152486||NM_015658 NM_152486, NM_015658 ENST00000344365||ENST00000342066 Hs.335293||Hs.405987 148398||26155 NOC2L||SAMD11 nucleolar complex associated 2 homolog (S. cerevisiae)||sterile alpha motif domain containing 11
14 HV3.60O08 H300002713 1 + 939963 940033 NM_198317 NM_198317 ENST00000338591 Hs.109212 339451 KLHL17 kelch-like 17 (Drosophila)
15 HV3.06C21 H200018764 1 + 950062 950131 NM_032129 NM_032129 ENST00000338967 Hs.528691 84069 PLEKHN1 pleckstrin homology domain containing, family N member 1
16 HV3.05B09 H200016740 1 - 951317 951386 XM_372194 XM_372194 ENST00000341290 Hs.271462 84808 C1orf170 chromosome 1 open reading frame 170
17 HV3.61P21 H300000283 1 - 955349 955419 XM_372194 XM_372194 ENST00000341290 Hs.271462 84808 C1orf170 chromosome 1 open reading frame 170
18 HV3.55J08 H300001880 1 - 974410 974480 NM_021170 NM_021170 ENST00000343008 NA 57801 HES4 hairy and enhancer of split 4 (Drosophila)
19 HV3.11K20 H300002301 1 - 974415 974485 NM_021170 NM_021170 ENST00000343008 NA 57801 HES4 hairy and enhancer of split 4 (Drosophila)
20 HV3.76D07 H300006942 1 + 989910 989980 NM_005101 NM_005101 ENST00000340468 NA 9636 G1P2 interferon, alpha-inducible protein (clone IFI-15K)

Total number of rows: 36288

Table truncated, full table size 5690 Kbytes.




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