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Status
Public on Sep 26, 2007
Title
Monsanto Custom Arabidopsis Genome Array
Technology type
spotted oligonucleotide
Distribution
custom-commercial
Organism
Arabidopsis thaliana Manufacturer
Affymetrix
Manufacture protocol
see manufacturer's web site
Catalog number
moAtGenomea
Description
The Monsanto Arabidopsis Genome Array is a custom array designed using Affymetrix GeneChip CustomExpress Array Design Guidelines. Feature size is 18 micron; and there are 9 probe pairs per transcript randomly distributed across the array. The sequences used for probe selections are mostly based on gene models released by TIGR in 2001. Additional gene models from Monsanto EST collections were also used. Probe sets have been mapped to TAIR AGI identifiers whenever possible. There are 27,385 probe sets on the array, which consists of perfect match and mismatch probe pairs. Standard Affymetrix controls have been used on the chip along with control made from internal sequences.
Web link
http://www.affymetrix.com/ Submission date
Jul 11, 2007
Last update date
Sep 26, 2007
Contact name
Don R Maszle
E-mail(s)
ncbigeo@mendelbio.com Organization name
Mendel Biotechnology, Inc.
Street address
3935 Point Eden Way
City
Hayward
State/province
CA
ZIP/Postal code
94545
Country
USA
Samples (15)
GSM210072 , GSM210073 , GSM210074 , GSM210075 , GSM210076 , GSM210077
Series (2)
GSE8455 AtNF-YB1 and CBF4 Overexpression Study in Arabidopsis
GSE8456 Transcriptional response of wild type ABA-treated Arabidopsis seedlings
Data table header descriptions ID Species Scientific Name The genus and species of the organism represented by the probe set
ORF Arabidopsis Genome Initiative locus identifier
SPOT_ID
Data table ID Species Scientific Name ORF SPOT_ID CAMV_35S_3UTR_at
Brassica oleracea var. botrytis
CAMV_35S_3UTR_at
E9_3UTR_x_at
Pisum sativum
E9_3UTR_x_at
MRT3702_100007C.1_at
Arabidopsis thaliana
AT3G58140 MRT3702_10000C.1_s_at
Arabidopsis thaliana
AT2G42700 MRT3702_100010C.1_at
Arabidopsis thaliana
AT4G10060 MRT3702_10001C.1_at
Arabidopsis thaliana
AT2G42710 MRT3702_100021C.1_at
Arabidopsis thaliana
AT1G05170 MRT3702_100025C.1_at
Arabidopsis thaliana
AT1G23300 MRT3702_10002C.2_at
Arabidopsis thaliana
AT2G42720 MRT3702_10003C.2_at
Arabidopsis thaliana
AT2G42730 MRT3702_100046C.1_at
Arabidopsis thaliana
AT1G70985 MRT3702_100059C.1_at
Arabidopsis thaliana
MRT3702_100059C.1_at
MRT3702_10005C.2_at
Arabidopsis thaliana
AT2G42750 MRT3702_100066C.1_at
Arabidopsis thaliana
MRT3702_100066C.1_at
MRT3702_10006C.2_at
Arabidopsis thaliana
AT2G42760 MRT3702_10007C.2_at
Arabidopsis thaliana
AT2G42770 MRT3702_100082C.1_at
Arabidopsis thaliana
AT5G60930 MRT3702_100091C.1_at
Arabidopsis thaliana
AT1G29060 MRT3702_10009C.2_at
Arabidopsis thaliana
AT2G42790 MRT3702_1000C.2_at
Arabidopsis thaliana
AT1G11190
27669 1420 Kbytes .Supplementary file Size Download File type/resource GPL5485.CDF.gz
7.0 Mb
(ftp) (http) CDF
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