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Platform GPL5540 Query DataSets for GPL5540
Status Public on Nov 18, 2007
Title 2005-09-28_Crawford_HG17_Set08
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Nimblegen
Manufacture protocol Oligonucleotides spaced approximately every 100 base pairs across the entire non-repetitive human genome were synthesized in situ on a 38-array set.
 
 
Contributor(s) Davis S, Crawford GE
Submission date Jul 13, 2007
Last update date Nov 18, 2007
Contact name Sean Davis
E-mail(s) sdavis2@mail.nih.gov
Phone 301-435-2652
Organization name National Cancer Institute
Lab Genetics Branch
Street address 37 Convent Drive, Room 6138
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (1) GSM210497
Series (1)
GSE8486 Whole genome DNAse hypersensitivity in human CD4+ T-cells

Data table header descriptions
ID Feature Match index
PROBE_DESIGN_ID PROBE_DESIGN_ID
SEQUENCE Actual sequence of probe
PROBE_ID Probe ID
X Physical X position on array
Y Physical Y position on array
chromosome Chromosome Name [build 35]
RANGE_START Start location on chromosome [build 35 coordinates]
RANGE_END End location on chromosome [build 35 coordinates]
RANGE_STRAND Strand of probe
RANGE_GB RefSeq genome accession for chromosome (NCBI35 build)
SPOT_ID spot identifier

Data table
ID PROBE_DESIGN_ID SEQUENCE PROBE_ID X Y chromosome RANGE_START RANGE_END RANGE_STRAND RANGE_GB SPOT_ID
52806037 2612_0001_0001 AAATGAATTTTTGGACATTTGTGTATATGGAATAAGATGATGTTTAAAAT chr3P83014971 1 1 chr3 83014971 83015020 + NC_000003.9
51312160 2612_0004_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 4 1 NA 0 0 CPK6
51312170 2612_0006_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 6 1 NA 0 0 CPK6
51312171 2612_0008_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 8 1 NA 0 0 CPK6
51312172 2612_0010_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 10 1 NA 0 0 CPK6
51312173 2612_0012_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 12 1 NA 0 0 CPK6
51312174 2612_0014_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 14 1 NA 0 0 CPK6
51312175 2612_0016_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 16 1 NA 0 0 CPK6
51312176 2612_0018_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 18 1 NA 0 0 CPK6
51312177 2612_0020_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 20 1 NA 0 0 CPK6
51312178 2612_0022_0001 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN CPK6 22 1 NA 0 0 CPK6
52548075 2612_0025_0001 GACCTCCATTGATGGATTAATCCCCGCCAATGGAAAATGCAGTTAGAGGC chr3P61681497 25 1 chr3 61681497 61681546 + NC_000003.9
52825170 2612_0027_0001 TGATTAACATGTTGCAAAATTTGTTATCATTTCTTAAATGTAGTTTTGTG chr3P83492543 27 1 chr3 83492543 83492592 + NC_000003.9
52584767 2612_0029_0001 TAGTTTAGGTCTTGTGGGGAAGAGACACAGGAGAGCCTTTTATTGATGAG chr3P81499750 29 1 chr3 81499750 81499799 + NC_000003.9
52841780 2612_0031_0001 TTAGGTAAGCCTCTAACACGCAAATCTTTTCACAGGGCATCTCTGGCCTT chr3P89353836 31 1 chr3 89353836 89353885 + NC_000003.9
52757161 2612_0033_0001 TTCTTGGGAGAAGGCAAAACCTATGGGAAATTTAATGTGGTATCTGGCAC chr3P113334428 33 1 chr3 113334428 113334477 + NC_000003.9
52681362 2612_0035_0001 AGTGATATGTAGTAGAATGCCCATTACATCCTCCCATTCCCATGATCACT chr3P108716060 35 1 chr3 108716060 108716109 + NC_000003.9
52796411 2612_0037_0001 ACTCTAATGACTGCAATATCAGATGGGTGGCATCTGAATTATCTGAATCT chr3P103548420 37 1 chr3 103548420 103548469 + NC_000003.9
52842301 2612_0039_0001 ATACCACAGTGCTACCTTAGAAATTGTGTTGCATTCATTGATTTGTAAGA chr3P79254153 39 1 chr3 79254153 79254202 + NC_000003.9
52644956 2612_0041_0001 CTCAAGGAAGAATAACTGGAGTTGAATGCTTGGGGACTCATGGCCCTAAC chr3P74387906 41 1 chr3 74387906 74387955 + NC_000003.9

Total number of rows: 391015

Table truncated, full table size 51806 Kbytes.




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Supplementary data files not provided
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