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Platform GPL5831 Query DataSets for GPL5831
Status Public on Jun 23, 2008
Title DASL Custom Prostate Panel by Probe
Technology type oligonucleotide beads
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Illumina, Inc.
Manufacture protocol http://www.illumina.com/pages.ilmn?ID=5
 
Description Panel contains 526 probe sets (typically three probes/set). Of these 481 were potentially prostate cancer relevant based upon markers of prostate cancer aggressiveness identified by a Mayo/University of Minnesota Partnership (PMID: 17376245) and previously published studies.
DASL Custom Prostate Panel by Gene may be viewed at GPL5873.
The GPL5831.dap file (linked as a Supplementary file at the foot of the record) is required by BeadStudio for processing Illumina image files.
 
Web link http://www.illumina.com/downloads/DASLvsDirectHyb.pdf
Contributor(s) Kollmeyer TM, Nakagawa T, Jenkins RB
Submission date Sep 11, 2007
Last update date Jun 23, 2008
Contact name Robert B. Jenkins
E-mail(s) rjenkins@mayo.edu
Organization name Mayo Clinic
Department Laboratory Medicine and Pathology
Street address 200 First Street SW
City Rochester
State/province MN
ZIP/Postal code 55905
Country USA
 

Data table header descriptions
ID target ID
SequenceSource source of the target sequence accession
GB_ACC GenBank or RefSeq identifier
SEQUENCE probe sequence
SPOT_ID spot identifier for array features lacking GenBank or RefSeq accession numbers

Data table
ID SequenceSource GB_ACC SEQUENCE SPOT_ID
GI_10346134-S-10 RefSeq NM_014268.1 CACTGCGCTTGGTTCCCATTTTCTTTGCTAAGGTGTATTAGCG
GI_10346134-S-4 RefSeq NM_014268.1 TGGTGAACAGATCTTCAACCTGCCAAAAAAGTCTCACCATGCAAA
GI_10346134-S-8 RefSeq NM_014268.1 GACACTTCCATTGTGTGTGGGAACGTTTCTTCTGGAGAATTGGAAC
GI_10518500-S-7 RefSeq NM_000130.2 GATTTCAACTCTGGGCTGATTGGGCCCCTGCTTATCTGTAAAAAA
GI_10518500-S-8 RefSeq NM_000130.2 GGGTGGGACACAGAAGACGTTTGACAAGCAAATCGTGCTACTATT
GI_10518500-S-9 RefSeq NM_000130.2 AGCAAGAGCTGGAGCCAGTCATCATCCCTAATGTACACAGTCAATG
GI_10835012-S-4 RefSeq NM_001437.1 ACTTGCCCACGAATCTTTGAGAACATTATAATGACCTTTGTGCCTCT
GI_10835012-S-6 RefSeq NM_001437.1 CCTGGAGCACGGCTCCATATACATACCTTCCTCCTATGTAGACAGC
GI_10835012-S-7 RefSeq NM_001437.1 CCAGCCATGACATTCTATAGCCCTGCTGTGATGAATTACAGCATTC
GI_10938013-S-2 RefSeq NM_005354.2 GATGAAGAAGGACGCGCTGACGCTGAGCCTGAGTGAGCAG
GI_10938013-S-7 RefSeq NM_005354.2 TGGAAGAGAGAAGAACAGAGTGTTCGATTCTGCCCTATTTATGTTTCTACT
GI_10938013-S-8 RefSeq NM_005354.2 CTGTTTGTAATCCTTGGTTCGCCCGGTTTTCTGTTTTCAGTAAAGTCT
GI_11056009-S-5 RefSeq NM_021635.1 CACTTGACCATGAAAGGTTCCTCAATGAAATGTTCCTCATTATCTTCA
GI_11056009-S-7 RefSeq NM_021635.1 ATAAACTCTCAGCCCTGCTGCAAAGCCTTTCCAGAAAAATAAAAA
GI_11056009-S-8 RefSeq NM_021635.1 CCAATGACTGTTTAAGCCCAGCCAAGTAACTGAACCATTCCAACTTC
GI_11496986-S-3 RefSeq NM_016590.2 ATGAAACTGAGCTCCAGAGCCAGCCAATCACTTAGCTCCTCATAA
GI_11496986-S-4 RefSeq NM_016590.2 CTCTGGAAAGCTGAAAGGGCTGCACTGGAACAACACAGATGAGATA
GI_11496986-S-8 RefSeq NM_016590.2 TCCAGGCTGAGATGGAAAACAAGCCCTTTATTGAATTTTCAACAC
GI_11612673-A-10 RefSeq NM_021910.1 TGAACTACCCCACAACACGCCTAAAACTCAAAACACCCAAAAATAT
GI_11612673-A-5 RefSeq NM_021910.1 CCATGGGACCTCATATGCAATTTGGGATTTACTAGTAGCCAAAAGGA

Total number of rows: 1536

Table truncated, full table size 123 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL5831.dap.gz 276.2 Kb (ftp)(http) DAP

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