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Platform GPL6068 Query DataSets for GPL6068
Status Public on Oct 28, 2008
Title Agilent-011447 Yeast Oligo Microarray (G4140A) - alternative version
Technology type in situ oligonucleotide
Distribution commercial
Organism Saccharomyces cerevisiae
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G4140A
 
Description This is an alternative version of the official Agilent platform assigned accession number GPL884. The ID column includes the Agilent probe identifiers instead of the Agilent feature IDs.

This oligonucleotide microarray will enable researchers to simultaneously characterize expression of many thousands of yeast genes and identify gene activity during important biological processes, such as yeast growth, adaptation, response to drug candidates and reproduction.
 
Submission date Oct 29, 2007
Last update date Oct 28, 2008
Contact name Yohan Jin
Organization name NIEHS
Street address 111 TW Alexander Dr.
City RTP
State/province NC
ZIP/Postal code 27709
Country USA
 
Samples (101) GSM240140, GSM240141, GSM240142, GSM240143, GSM240144, GSM240145 
Series (4)
GSE9466 Transcriptome in yeast by exposure of 7 transition metals
GSE30228 Transcriptome profiling reveals a novel role for Trichostatin A in antagonizing histone chaperone Chz1 mediated telomere anti-silencing.
GSE36793 A role for the nucleoporin Nup170p in chromatin structure and gene silencing [Agilent microarrays]

Data table header descriptions
ID Agilent probe identifier
NAME
CONTROL_TYPE Control type
ORF
GENE_SYMBOL Gene Symbol
ACCESSION_STRING Accession String
DESCRIPTION Description

Data table
ID NAME CONTROL_TYPE ORF GENE_SYMBOL ACCESSION_STRING DESCRIPTION
A_06_P1001 Q0010 FALSE Q0010 ORF:Q0010 sgd|Q0010 BioProcess=biological_process unknown|MolFunction=molecular_function unknown|CellComponent=not yet annotated
A_06_P1002 Q0017 FALSE Q0017 ORF:Q0017 sgd|Q0017 BioProcess=biological_process unknown|MolFunction=molecular_function unknown|CellComponent=not yet annotated
A_06_P1003 Q0045 FALSE Q0045 COX1 sgd|Q0045 BioProcess=aerobic respiration|MolFunction=cytochrome c oxidase|CellComponent=respiratory chain complex IV (sensu Eukarya)
A_06_P1004 Q0050 FALSE Q0050 AI1 sgd|Q0050 BioProcess=mRNA processing|MolFunction=not yet annotated|CellComponent=not yet annotated
A_06_P1005 Q0055 FALSE Q0055 AI2 sgd|Q0055 BioProcess=mRNA processing|MolFunction=not yet annotated|CellComponent=not yet annotated
A_06_P1006 Q0060 FALSE Q0060 AI3 sgd|Q0060 BioProcess=mRNA processing|MolFunction=not yet annotated|CellComponent=not yet annotated
A_06_P1007 Q0065 FALSE Q0065 AI4 sgd|Q0065 BioProcess=mRNA processing|MolFunction=not yet annotated|CellComponent=not yet annotated
A_06_P1008 Q0070 FALSE Q0070 AI5_ALPHA sgd|Q0070 BioProcess=biological_process unknown|MolFunction=molecular_function unknown|CellComponent=not yet annotated
A_06_P1009 Q0075 FALSE Q0075 AI5_BETA sgd|Q0075 BioProcess=biological_process unknown|MolFunction=molecular_function unknown|CellComponent=not yet annotated
A_06_P1010 Q0080 FALSE Q0080 AAP1 sgd|Q0080 BioProcess=ATP synthesis coupled proton transport|MolFunction=hydrogen-transporting two-sector ATPase|CellComponent=proton-transporting ATP synthase complex, coupling factor F(0) (sensu Eukarya)
A_06_P1011 Q0085 FALSE Q0085 ATP6 sgd|Q0085 BioProcess=ATP synthesis coupled proton transport|MolFunction=hydrogen-transporting two-sector ATPase|CellComponent=proton-transporting ATP synthase complex, coupling factor F(0) (sensu Eukarya)
A_06_P1012 Q0105 FALSE Q0105 COB sgd|Q0105 BioProcess=aerobic respiration*|MolFunction=ubiquinol-cytochrome c reductase|CellComponent=respiratory chain complex III (sensu Eukarya)
A_06_P1013 Q0110 FALSE Q0110 BI2 sgd|Q0110 BioProcess=RNA splicing|MolFunction=nuclease|CellComponent=mitochondrion
A_06_P1014 Q0115 FALSE Q0115 BI3 sgd|Q0115 BioProcess=RNA splicing|MolFunction=RNA binding|CellComponent=mitochondrion
A_06_P1015 Q0120 FALSE Q0120 BI4 sgd|Q0120 BioProcess=RNA splicing|MolFunction=RNA binding|CellComponent=mitochondrion
A_06_P1016 Q0130 FALSE Q0130 OLI1 sgd|Q0130 BioProcess=ATP synthesis coupled proton transport|MolFunction=hydrogen-transporting two-sector ATPase|CellComponent=proton-transporting ATP synthase complex, coupling factor F(0) (sensu Eukarya)
A_06_P1017 Q0140 FALSE Q0140 VAR1 sgd|Q0140 BioProcess=protein biosynthesis*|MolFunction=structural constituent of ribosome|CellComponent=mitochondrial small ribosomal subunit
A_06_P1018 Q0160 FALSE Q0160 SCEI sgd|Q0160 BioProcess=biological_process unknown|MolFunction=not yet annotated|CellComponent=not yet annotated
A_06_P1019 Q0182 FALSE Q0182 ORF:Q0182 sgd|Q0182 BioProcess=biological_process unknown|MolFunction=molecular_function unknown|CellComponent=not yet annotated
A_06_P1020 Q0250 FALSE Q0250 COX2 sgd|Q0250 BioProcess=aerobic respiration|MolFunction=cytochrome c oxidase|CellComponent=respiratory chain complex IV (sensu Eukarya)

Total number of rows: 6256

Table truncated, full table size 991 Kbytes.




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Supplementary data files not provided

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