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Platform GPL6325 Query DataSets for GPL6325
Status Public on Dec 27, 2007
Title NimbleGen Homo sapiens HG18 promoter 1 of 2
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site
Catalog number C4540-01-01
 
Description Source: UCSC
Build: HG18, NCBI 36
Probe Length: 50-75mer
Median Probe Spacing: 100bp
Probes per Array: 385,000
Feature Size: 16um x 1um
Array Dimensions: 17.4mm x 13mm
Overall Slide Dimensions: 1" x 3" (25 x 75mm)

 
Submission date Dec 26, 2007
Last update date Dec 27, 2007
Organization NimbleGen Systems, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov
Phone 608-218-7600
URL http://www.nimblegen.com/
Street address 504 S. Rosa Road
City Madison
State/province WI
ZIP/Postal code 53719
Country USA
 
Samples (55) GSM253499, GSM299800, GSM299802, GSM299804, GSM299806, GSM299808 
Series (22)
GSE9922 HOXA13 Chromatin Immunoprecipitation on human HG18 Nimblegen 2 array promoter set
GSE11874 Chromatin Immunoprecipitation microarray data from antiHA IP in stable LNCaP cells expressing either YFP or HA-SOX4/YFP
GSE11915 SOX4 effect on LNCaP prostate cancer cells

Data table header descriptions
ID PROBE_ID = The NimbleGen probe identifier.
SEQ_ID The NimbleGen sequence identifier.
CHROMOSOME The chromosome or parent sequence that the probe is located on.
POSITION Position of the PROBE SEQUENCE in the sequence/region of interest, starting from the left/5' end (Build: HG18, NCBI 36).
PROBE_COUNT The uniqueness count of the probe in the target genome.
LENGTH Length of the probe in base pairs.
GC The percent GC of the probe sequence.
GB_RANGE ACCESSION.VERSION[start..end]

Data table
ID SEQ_ID CHROMOSOME POSITION PROBE_COUNT LENGTH GC GB_RANGE
CHR01P000006688 CHR1:6688-11364 chr1 6688 7 50 0.62 NC_000001.9[6688..11364]
CHR01P000006788 CHR1:6688-11364 chr1 6788 7 50 0.62 NC_000001.9[6688..11364]
CHR01P000006888 CHR1:6688-11364 chr1 6888 7 50 0.52 NC_000001.9[6688..11364]
CHR01P000006988 CHR1:6688-11364 chr1 6988 7 50 0.60 NC_000001.9[6688..11364]
CHR01P000007088 CHR1:6688-11364 chr1 7088 7 50 0.62 NC_000001.9[6688..11364]
CHR01P000007188 CHR1:6688-11364 chr1 7188 7 50 0.52 NC_000001.9[6688..11364]
CHR01P000007288 CHR1:6688-11364 chr1 7288 6 50 0.66 NC_000001.9[6688..11364]
CHR01P000007388 CHR1:6688-11364 chr1 7388 7 50 0.72 NC_000001.9[6688..11364]
CHR01P000007488 CHR1:6688-11364 chr1 7488 7 50 0.56 NC_000001.9[6688..11364]
CHR01P000007588 CHR1:6688-11364 chr1 7588 6 50 0.56 NC_000001.9[6688..11364]
CHR01P000007688 CHR1:6688-11364 chr1 7688 7 50 0.64 NC_000001.9[6688..11364]
CHR01P000007788 CHR1:6688-11364 chr1 7788 7 50 0.72 NC_000001.9[6688..11364]
CHR01P000007888 CHR1:6688-11364 chr1 7888 7 50 0.64 NC_000001.9[6688..11364]
CHR01P000007988 CHR1:6688-11364 chr1 7988 6 50 0.56 NC_000001.9[6688..11364]
CHR01P000008088 CHR1:6688-11364 chr1 8088 7 50 0.60 NC_000001.9[6688..11364]
CHR01P000008188 CHR1:6688-11364 chr1 8188 7 50 0.64 NC_000001.9[6688..11364]
CHR01P000008288 CHR1:6688-11364 chr1 8288 8 50 0.64 NC_000001.9[6688..11364]
CHR01P000008388 CHR1:6688-11364 chr1 8388 8 50 0.56 NC_000001.9[6688..11364]
CHR01P000008488 CHR1:6688-11364 chr1 8488 8 50 0.52 NC_000001.9[6688..11364]
CHR01P000008588 CHR1:6688-11364 chr1 8588 8 50 0.58 NC_000001.9[6688..11364]

Total number of rows: 378943

Table truncated, full table size 36124 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL6325_2006-07-18_HG18_promoter_1of2.ndf.gz 23.9 Mb (ftp)(http) NDF
GPL6325_2006-07-18_HG18_promoter_1of2.pos.gz 2.9 Mb (ftp)(http) POS

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