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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 27, 2007 |
| Title |
NimbleGen Homo sapiens HG18 promoter 2 of 2 |
| Technology type |
in situ oligonucleotide |
| Distribution |
commercial |
| Organism |
Homo sapiens |
| Manufacturer |
NimbleGen |
| Manufacture protocol |
see manufacturer's web site
|
| Catalog number |
C4540-02-01 |
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| Description |
Source: UCSC
Build: HG18, NCBI 36
Probe Length: 50-75mer
Median Probe Spacing: 100bp
Probes per Array: 385,000
Feature Size: 16um x 16um
Array Dimensions: 17.4mm x 13mm
Overall Slide Dimensions: 1" x 3" (25 x 75mm)
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| Submission date |
Dec 26, 2007 |
| Last update date |
Dec 27, 2007 |
| Organization |
NimbleGen Systems, Inc. |
| E-mail(s) |
geo@ncbi.nlm.nih.gov
|
| Phone |
608-218-7600
|
| URL |
http://www.nimblegen.com/
|
| Street address |
504 S. Rosa Road
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| City |
Madison |
| State/province |
WI |
| ZIP/Postal code |
53719 |
| Country |
USA |
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| Samples (43)
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GSM253500, GSM299801, GSM299803, GSM299805, GSM299807, GSM299809
GSM327833, GSM339436, GSM406530, GSM406531, GSM462288, GSM462290, GSM520529, GSM520531, GSM520533, GSM520535, GSM520537, GSM520539, GSM529553, GSM529555, GSM530027, GSM537113, GSM537115, GSM537117, GSM537119, GSM556176, GSM556177, GSM556178, GSM556179, GSM729618, GSM729619, GSM729620, GSM729621, GSM753458, GSM753459, GSM753460, GSM753461, GSM840192, GSM840194, GSM900175, GSM900176, GSM1047985, GSM1047986
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| Series (20)
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| GSE9922 |
HOXA13 Chromatin Immunoprecipitation on human HG18 Nimblegen 2 array promoter set |
| GSE11874 |
Chromatin Immunoprecipitation microarray data from antiHA IP in stable LNCaP cells expressing either YFP or HA-SOX4/YFP |
| GSE11915 |
SOX4 effect on LNCaP prostate cancer cells |
| GSE13101 |
H4K12 acetylation in Human Spermatozoa |
| GSE13238 |
DNA packaging of human and murine spermatozoal chromatin |
| GSE13464 |
ChIP-chip from Ehrlichia chaffeensis-infected THP-1 cells with ankyrin repeat-containing protein, p200 |
| GSE18590 |
DNMT1 Maintains Progenitor Function in Self-Renewing Somatic Tissue |
| GSE20737 |
Long non-coding RNA HOTAIR reprograms chromatin state to promote breast cancer metastasis |
| GSE21068 |
Estrogen-mediated Epigenetic Repression of Large Chromosomal Regions through DNA Looping |
| GSE21151 |
ChIP-chip from fetal brain tissue with b-Catenin |
| GSE21495 |
Genome wide screen reveals WNT11, a noncanonical WNT gene, as a target of ETS transcription factor ERG |
| GSE22344 |
ChIP-chip of siGFP- or siHOTAIR-treated foreskin fibroblasts with anti-LSD1 or anti-SUZ12 antibodies on human HG18 Nimblegen promoter arrays |
| GSE22345 |
Long noncoding RNA as modular scaffold of histone modification complexes |
| GSE29489 |
ChIP-chip of BMP2 or control treated human pulmonary artery endothelial cells with anti-beta-catenin or anti-ppar-gamma antibodies on promoter regions |
| GSE30357 |
Chip-chip from human diffuse large B cell lymphoma cell lines with IRF8 |
| GSE30359 |
Transcriptional network governed by IRF8 and/or PU.1 in germinal center B cells |
| GSE33998 |
Chip-chip from WI-38 human fibroblast with Argonaute antibody |
| GSE36751 |
Mutant p53 cooperates with ETS2 to promote etoposide resistance [ChIP-chip] |
| GSE36752 |
Mutant p53 cooperates with ETS2 to promote etoposide resistance |
| GSE42686 |
Chip-chip from undifferentiated and neuron-differentiated hMSCs cells with EZH2 |
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| Data table header descriptions |
| ID |
PROBE_ID = The NimbleGen probe identifier. |
| SEQ_ID |
The NimbleGen sequence identifier. |
| CHROMOSOME |
The chromosome or parent sequence that the probe is located on. |
| POSITION |
Position of the PROBE SEQUENCE in the sequence/region of interest, starting from the left/5' end (Build: HG18, NCBI 36). |
| PROBE_COUNT |
The uniqueness count of the probe in the target genome. |
| LENGTH |
Length of the probe in base pairs. |
| GC |
The percent GC of the probe sequence. |
| GB_RANGE |
ACCESSION.VERSION[start..end] |
| Data table |
| ID |
SEQ_ID |
CHROMOSOME |
POSITION |
PROBE_COUNT |
LENGTH |
GC |
GB_RANGE |
| CHR10P045122163 |
CHR10:45122163-45126413 |
chr10 |
45122163 |
1 |
58 |
0.40 |
NC_000010.9[45122163..45126413] |
| CHR10P045122263 |
CHR10:45122163-45126413 |
chr10 |
45122263 |
1 |
63 |
0.33 |
NC_000010.9[45122163..45126413] |
| CHR10P045122363 |
CHR10:45122163-45126413 |
chr10 |
45122363 |
1 |
61 |
0.38 |
NC_000010.9[45122163..45126413] |
| CHR10P045122463 |
CHR10:45122163-45126413 |
chr10 |
45122463 |
1 |
50 |
0.46 |
NC_000010.9[45122163..45126413] |
| CHR10P045122563 |
CHR10:45122163-45126413 |
chr10 |
45122563 |
1 |
50 |
0.52 |
NC_000010.9[45122163..45126413] |
| CHR10P045122663 |
CHR10:45122163-45126413 |
chr10 |
45122663 |
1 |
50 |
0.52 |
NC_000010.9[45122163..45126413] |
| CHR10P045122763 |
CHR10:45122163-45126413 |
chr10 |
45122763 |
1 |
63 |
0.38 |
NC_000010.9[45122163..45126413] |
| CHR10P045122863 |
CHR10:45122163-45126413 |
chr10 |
45122863 |
1 |
50 |
0.52 |
NC_000010.9[45122163..45126413] |
| CHR10P045122963 |
CHR10:45122163-45126413 |
chr10 |
45122963 |
1 |
51 |
0.43 |
NC_000010.9[45122163..45126413] |
| CHR10P045123063 |
CHR10:45122163-45126413 |
chr10 |
45123063 |
1 |
62 |
0.37 |
NC_000010.9[45122163..45126413] |
| CHR10P045123163 |
CHR10:45122163-45126413 |
chr10 |
45123163 |
1 |
50 |
0.48 |
NC_000010.9[45122163..45126413] |
| CHR10P045123563 |
CHR10:45122163-45126413 |
chr10 |
45123563 |
1 |
61 |
0.33 |
NC_000010.9[45122163..45126413] |
| CHR10P045123663 |
CHR10:45122163-45126413 |
chr10 |
45123663 |
1 |
56 |
0.32 |
NC_000010.9[45122163..45126413] |
| CHR10P045123763 |
CHR10:45122163-45126413 |
chr10 |
45123763 |
1 |
50 |
0.50 |
NC_000010.9[45122163..45126413] |
| CHR10P045123963 |
CHR10:45122163-45126413 |
chr10 |
45123963 |
1 |
57 |
0.35 |
NC_000010.9[45122163..45126413] |
| CHR10P045124063 |
CHR10:45122163-45126413 |
chr10 |
45124063 |
1 |
56 |
0.30 |
NC_000010.9[45122163..45126413] |
| CHR10P045124163 |
CHR10:45122163-45126413 |
chr10 |
45124163 |
1 |
56 |
0.32 |
NC_000010.9[45122163..45126413] |
| CHR10P045124263 |
CHR10:45122163-45126413 |
chr10 |
45124263 |
1 |
50 |
0.50 |
NC_000010.9[45122163..45126413] |
| CHR10P045124363 |
CHR10:45122163-45126413 |
chr10 |
45124363 |
1 |
50 |
0.46 |
NC_000010.9[45122163..45126413] |
| CHR10P045124463 |
CHR10:45122163-45126413 |
chr10 |
45124463 |
1 |
50 |
0.50 |
NC_000010.9[45122163..45126413] |
Total number of rows: 378961
Table truncated, full table size 35831 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL6326_2006-07-18_HG18_promoter_2of2.ndf.gz |
23.9 Mb |
(ftp)(http) |
NDF |
| GPL6326_2006-07-18_HG18_promoter_2of2.pos.gz |
2.8 Mb |
(ftp)(http) |
POS |
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